Wall clock time and date at job start Mon Mar 30 2020 03:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99720 * 2 1 4 4 H 1.48501 * 109.47362 * 269.99627 * 3 2 1 5 5 H 1.48506 * 109.47303 * 30.00171 * 3 2 1 6 6 H 1.48507 * 109.47397 * 150.00111 * 3 2 1 7 7 C 1.37876 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99876 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00151 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.30841 * 32.95782 * 11 10 9 13 13 C 1.54908 * 110.27595 * 270.90611 * 11 10 9 14 14 C 1.55307 * 106.38054 * 244.48781 * 13 11 10 15 15 C 1.53271 * 102.93998 * 23.95442 * 14 13 11 16 16 H 1.09002 * 111.05650 * 75.94923 * 15 14 13 17 17 C 1.51777 * 115.79958 * 202.84921 * 15 14 13 18 18 C 1.53740 * 107.24925 * 177.05653 * 17 15 14 19 19 C 1.52563 * 111.49775 * 302.18421 * 18 17 15 20 20 C 1.53764 * 111.45403 * 54.78467 * 19 18 17 21 21 C 1.51616 * 107.26274 * 302.50564 * 20 19 18 22 22 H 1.08997 * 109.76660 * 305.24640 * 21 20 19 23 23 H 0.97000 * 120.00291 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46906 * 59.99999 * 9 7 2 25 25 H 1.09000 * 109.47675 * 300.00039 * 9 7 2 26 26 H 1.00909 * 110.99594 * 56.05112 * 10 9 7 27 27 H 1.09005 * 110.07213 * 125.25887 * 13 11 10 28 28 H 1.09002 * 110.07312 * 3.71913 * 13 11 10 29 29 H 1.09003 * 110.72356 * 265.59636 * 14 13 11 30 30 H 1.08997 * 110.87509 * 142.38715 * 14 13 11 31 31 H 1.08994 * 109.90178 * 57.62033 * 17 15 14 32 32 H 1.08999 * 109.96543 * 296.52795 * 17 15 14 33 33 H 1.09005 * 109.07292 * 181.66920 * 18 17 15 34 34 H 1.08996 * 109.07302 * 62.70412 * 18 17 15 35 35 H 1.08999 * 109.08484 * 294.27611 * 19 18 17 36 36 H 1.09002 * 109.08494 * 175.29426 * 19 18 17 37 37 H 1.08996 * 109.89939 * 183.07123 * 20 19 18 38 38 H 1.09000 * 109.90014 * 61.94850 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5056 -4.9070 0.0011 12 1 0.5710 -4.8309 -0.5547 13 6 1.2300 -5.3676 1.4543 14 6 2.0501 -6.6696 1.6641 15 6 3.1682 -6.5424 0.6234 16 1 3.9264 -5.8300 0.9484 17 6 3.8175 -7.8437 0.1891 18 6 4.8466 -7.4985 -0.8997 19 6 4.1947 -6.7817 -2.0781 20 6 3.4220 -5.5338 -1.6196 21 6 2.3933 -5.9898 -0.6034 22 1 1.7741 -6.7770 -1.0334 23 1 -0.4850 0.8400 0.0004 24 1 0.6249 -2.5570 -0.8897 25 1 0.6241 -2.5568 0.8902 26 1 2.8406 -3.5485 0.7820 27 1 0.1671 -5.5693 1.5876 28 1 1.5570 -4.6019 2.1578 29 1 1.4365 -7.5483 1.4653 30 1 2.4639 -6.7099 2.6717 31 1 3.0626 -8.5184 -0.2145 32 1 4.3175 -8.3114 1.0372 33 1 5.3112 -8.4183 -1.2551 34 1 5.6152 -6.8547 -0.4720 35 1 3.5056 -7.4652 -2.5741 36 1 4.9682 -6.4820 -2.7852 37 1 2.9225 -5.0729 -2.4717 38 1 4.1070 -4.8213 -1.1601 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714302014.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:59 Heat of formation + Delta-G solvation = -51.073694 kcal Electronic energy + Delta-G solvation = -15891.564263 eV Core-core repulsion = 13538.236387 eV Total energy + Delta-G solvation = -2353.327877 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94299 -37.02215 -35.21844 -33.81440 -31.80097 -29.29367 -28.70998 -26.45309 -23.73633 -23.27225 -21.62678 -21.21587 -20.18723 -18.50329 -16.89870 -16.20990 -16.10721 -15.59271 -15.13535 -14.95015 -14.62798 -14.31931 -14.08347 -14.01858 -13.43589 -13.02023 -12.95075 -12.71052 -12.49529 -12.34628 -11.98938 -11.88983 -11.68667 -11.65084 -11.48209 -11.34717 -11.16756 -10.89710 -10.66512 -10.52381 -8.96940 -8.22725 -6.34019 1.39702 1.41823 1.52931 2.39308 3.10266 3.52350 3.64895 3.80856 3.91821 4.16451 4.25855 4.40138 4.45526 4.52505 4.66721 4.70776 4.73605 4.79474 4.86100 4.96772 5.02916 5.09364 5.12487 5.15854 5.23980 5.26821 5.32848 5.41161 5.49163 5.50234 5.57637 5.60935 5.64197 5.80650 6.04893 6.51192 6.77387 6.92918 7.37250 8.88864 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038789 B = 0.006471 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.681245 B = 4325.633003 C = 4698.953535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.212 3.788 10 N -0.670 5.670 11 C 0.079 3.921 12 H 0.046 0.954 13 C -0.149 4.149 14 C -0.103 4.103 15 C -0.089 4.089 16 H 0.063 0.937 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.074 4.074 22 H 0.073 0.927 23 H 0.265 0.735 24 H -0.007 1.007 25 H -0.042 1.042 26 H 0.331 0.669 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -16.059 0.682 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.299 5.299 11 C -0.032 4.032 12 H 0.064 0.936 13 C -0.189 4.189 14 C -0.140 4.140 15 C -0.108 4.108 16 H 0.082 0.918 17 C -0.139 4.139 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.127 4.127 21 C -0.093 4.093 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.011 0.989 25 H -0.025 1.025 26 H 0.149 0.851 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.647 -15.935 -0.019 17.675 hybrid contribution -0.642 1.322 0.822 1.683 sum 7.006 -14.613 0.803 16.226 Atomic orbital electron populations 1.70098 1.07856 1.27939 1.51693 1.25966 0.95774 1.03421 0.94630 0.85333 0.78529 0.77970 0.78451 1.19875 1.20651 1.18699 1.21561 0.93750 0.91525 1.50365 0.91840 1.19161 0.90655 0.89116 0.92649 1.60637 1.19559 1.00952 1.48789 1.22088 0.95922 0.90175 0.94997 0.93584 1.23224 1.00358 0.98564 0.96738 1.22107 0.96483 0.96278 0.99164 1.21851 0.96469 0.97989 0.94461 0.91836 1.21384 0.98342 0.95765 0.98380 1.21515 0.97905 1.00253 0.95544 1.21572 0.99330 0.96382 0.98005 1.21056 0.97161 0.96969 0.97563 1.21601 0.95805 0.95750 0.96159 0.90894 0.92668 0.98912 1.02469 0.85127 0.92359 0.93423 0.90315 0.90942 0.91291 0.90832 0.90759 0.92717 0.92027 0.92077 0.94312 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.53 -31.25 9.32 25.60 0.24 -31.01 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.76 5.29 85.56 0.45 12.21 16 10 N -0.67 -29.58 5.19 -493.05 -2.56 -32.14 16 11 C 0.08 2.90 3.11 45.40 0.14 3.04 16 12 H 0.05 1.88 7.82 -2.39 -0.02 1.86 16 13 C -0.15 -4.77 6.51 32.04 0.21 -4.56 16 14 C -0.10 -2.46 6.45 31.48 0.20 -2.26 16 15 C -0.09 -2.18 2.37 -10.32 -0.02 -2.20 16 16 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 17 C -0.10 -1.92 5.66 30.44 0.17 -1.74 16 18 C -0.11 -2.19 5.84 30.70 0.18 -2.01 16 19 C -0.12 -2.59 5.84 30.71 0.18 -2.41 16 20 C -0.09 -2.68 5.04 30.40 0.15 -2.53 16 21 C -0.07 -2.17 2.16 -10.63 -0.02 -2.19 16 22 H 0.07 1.98 7.97 -2.39 -0.02 1.96 16 23 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 24 H -0.01 -0.44 8.07 -2.39 -0.02 -0.46 16 25 H -0.04 -2.53 8.14 -2.39 -0.02 -2.55 16 26 H 0.33 14.15 8.18 -89.69 -0.73 13.42 16 27 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.05 1.67 7.63 -2.39 -0.02 1.65 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.22 8.02 -2.39 -0.02 1.20 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.83 7.69 -2.39 -0.02 1.81 16 Total: -1.00 -63.69 293.36 2.36 -61.33 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.27 Total: 16.40 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 2.34 Total: -35.19 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -2.27 Total: -89.73 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.69 2.36 -61.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714302014.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.253 kcal (2) G-P(sol) polarization free energy of solvation -63.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds