Wall clock time and date at job start Mon Mar 30 2020 03:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.07371 * 34.29856 * 11 10 9 13 13 C 1.54020 * 110.08961 * 272.76308 * 11 10 9 14 14 C 1.54746 * 106.52086 * 242.54313 * 13 11 10 15 15 C 1.53990 * 103.48359 * 23.01991 * 14 13 11 16 16 H 1.08993 * 108.59569 * 76.55118 * 15 14 13 17 17 C 1.50970 * 112.60560 * 197.65444 * 15 14 13 18 18 C 1.52850 * 111.50397 * 64.79129 * 17 15 14 19 19 C 1.53291 * 108.23632 * 59.02243 * 18 17 15 20 20 C 1.52941 * 108.97506 * 296.51380 * 19 18 17 21 21 C 1.53054 * 110.70590 * 61.46133 * 20 19 18 22 22 H 1.09004 * 111.76635 * 72.65898 * 21 20 19 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.00899 * 111.00084 * 303.95478 * 10 9 7 27 27 H 1.09002 * 110.03614 * 1.81290 * 13 11 10 28 28 H 1.09002 * 110.03572 * 123.24402 * 13 11 10 29 29 H 1.09004 * 110.59237 * 264.52520 * 14 13 11 30 30 H 1.09000 * 110.76662 * 141.59698 * 14 13 11 31 31 H 1.08997 * 109.07158 * 185.30637 * 17 15 14 32 32 H 1.08995 * 109.07211 * 304.27015 * 17 15 14 33 33 H 1.08999 * 109.70931 * 178.71337 * 18 17 15 34 34 H 1.08998 * 109.70672 * 299.29765 * 18 17 15 35 35 H 1.09002 * 109.62881 * 56.03459 * 19 18 17 36 36 H 1.09001 * 109.62587 * 176.41196 * 19 18 17 37 37 H 1.09004 * 108.84789 * 301.43795 * 20 19 18 38 38 H 1.08997 * 109.72679 * 182.04985 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.5837 -4.8325 -0.5783 13 6 1.1913 -5.3393 1.4434 14 6 1.9612 -6.6597 1.6849 15 6 3.0984 -6.6071 0.6479 16 1 3.8628 -5.9172 1.0051 17 6 3.7238 -7.9592 0.4033 18 6 2.7275 -8.9314 -0.2280 19 6 2.2469 -8.3317 -1.5544 20 6 1.4972 -7.0296 -1.2687 21 6 2.4204 -6.0096 -0.5979 22 1 3.1480 -5.6006 -1.2989 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8405 -3.5487 -0.7819 27 1 1.5300 -4.5757 2.1437 28 1 0.1201 -5.5040 1.5594 29 1 1.3153 -7.5188 1.5032 30 1 2.3653 -6.6920 2.6966 31 1 4.5777 -7.8412 -0.2637 32 1 4.0686 -8.3690 1.3526 33 1 3.2148 -9.8888 -0.4125 34 1 1.8787 -9.0738 0.4408 35 1 3.1047 -8.1199 -2.1927 36 1 1.5829 -9.0361 -2.0554 37 1 0.6587 -7.2441 -0.6061 38 1 1.1183 -6.6111 -2.2011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714302015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:01 Heat of formation + Delta-G solvation = -35.747201 kcal Electronic energy + Delta-G solvation = -15817.046961 eV Core-core repulsion = 13464.383691 eV Total energy + Delta-G solvation = -2352.663270 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82677 -35.47818 -33.27738 -32.00196 -30.84797 -28.42172 -26.92763 -24.59844 -22.65909 -21.69522 -21.36808 -19.26671 -18.19716 -16.37418 -15.83375 -14.74344 -14.65022 -14.58776 -14.09483 -13.71791 -13.35800 -12.90337 -12.37476 -12.20192 -11.87378 -11.59204 -11.49206 -11.12579 -11.07660 -11.01924 -10.72763 -10.59675 -10.33376 -10.24480 -10.16135 -9.84511 -9.72022 -9.54745 -9.07831 -8.44632 -7.20033 -6.00043 -4.01730 3.33983 3.39499 3.43442 4.45491 4.73185 4.74736 4.84468 5.14702 5.23485 5.32234 5.35872 5.43006 5.49249 5.61384 5.68773 5.76414 5.84931 5.94622 5.96929 6.03576 6.09512 6.11831 6.22386 6.24214 6.33479 6.43655 6.51144 6.61099 6.66465 6.76314 6.89758 7.35480 7.48451 7.84138 8.19486 8.48045 8.70113 9.08362 9.63128 11.11111 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053522 B = 0.005620 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.025903 B = 4981.442471 C = 4998.362726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.684 5.684 11 C 0.084 3.916 12 H 0.035 0.965 13 C -0.113 4.113 14 C -0.114 4.114 15 C -0.081 4.081 16 H 0.074 0.926 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.083 4.083 22 H 0.075 0.925 23 H 0.261 0.739 24 H 0.027 0.973 25 H -0.016 1.016 26 H 0.327 0.673 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 -16.417 -0.650 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.027 4.027 12 H 0.053 0.947 13 C -0.152 4.152 14 C -0.152 4.152 15 C -0.099 4.099 16 H 0.093 0.907 17 C -0.146 4.146 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.102 4.102 22 H 0.094 0.906 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.002 0.998 26 H 0.144 0.856 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.182 -16.259 0.041 16.788 hybrid contribution -0.051 1.033 -0.881 1.359 sum 4.130 -15.226 -0.840 15.798 Atomic orbital electron populations 1.69971 1.06084 1.26691 1.51092 1.24996 0.94859 0.99334 0.95424 0.86495 0.79684 0.83085 0.78104 1.20639 1.19875 1.21338 1.21215 0.93487 0.90354 1.50090 0.92036 1.19571 0.90627 0.87461 0.95574 1.60774 1.20928 1.01068 1.48673 1.22436 0.95030 0.90171 0.95028 0.94685 1.22286 0.98528 0.96715 0.97625 1.22301 0.97045 0.97667 0.98194 1.21212 0.97599 0.95750 0.95350 0.90737 1.21015 0.98082 0.95258 1.00225 1.21565 0.99265 0.97738 0.96993 1.21554 0.99948 0.96868 0.97133 1.21579 0.98331 0.94854 1.00226 1.22112 0.96626 0.95235 0.96262 0.90647 0.92977 0.95518 0.99827 0.85630 0.90489 0.93050 0.92274 0.92343 0.92412 0.92489 0.92536 0.91879 0.92245 0.92541 0.91994 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.81 9.32 -34.44 -0.32 -15.13 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.21 5.27 -4.98 -0.03 5.19 16 10 N -0.68 -14.93 6.20 -106.19 -0.66 -15.59 16 11 C 0.08 1.53 2.57 -66.01 -0.17 1.36 16 12 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 13 C -0.11 -1.92 6.46 -25.28 -0.16 -2.09 16 14 C -0.11 -1.57 5.75 -25.30 -0.15 -1.71 16 15 C -0.08 -1.09 2.71 -90.65 -0.25 -1.33 16 16 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 17 C -0.11 -1.20 5.38 -27.83 -0.15 -1.35 16 18 C -0.12 -1.20 5.81 -26.66 -0.15 -1.36 16 19 C -0.12 -1.26 5.91 -26.61 -0.16 -1.41 16 20 C -0.11 -1.43 4.68 -26.73 -0.13 -1.56 16 21 C -0.08 -1.22 3.04 -88.95 -0.27 -1.49 16 22 H 0.08 1.13 7.64 -51.93 -0.40 0.73 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.03 0.77 8.13 -51.92 -0.42 0.35 16 25 H -0.02 -0.46 8.07 -51.93 -0.42 -0.88 16 26 H 0.33 6.87 8.09 -39.29 -0.32 6.55 16 27 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.74 6.09 -51.93 -0.32 0.42 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.65 6.75 -51.93 -0.35 0.30 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.81 7.12 -51.93 -0.37 0.44 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 289.33 15.07 4.36 4.36 Total: -1.00 -29.66 289.33 -9.35 -39.01 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.74 Total: 1.21 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.02 Total: -19.38 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.08 Total: -42.18 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.66 -9.35 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714302015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.259 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds