Wall clock time and date at job start Mon Mar 30 2020 03:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.07371 * 34.29856 * 11 10 9 13 13 C 1.54020 * 110.08961 * 272.76308 * 11 10 9 14 14 C 1.54746 * 106.52086 * 242.54313 * 13 11 10 15 15 C 1.53990 * 103.48359 * 23.01991 * 14 13 11 16 16 H 1.08993 * 108.59569 * 76.55118 * 15 14 13 17 17 C 1.50970 * 112.60560 * 197.65444 * 15 14 13 18 18 C 1.52850 * 111.50397 * 64.79129 * 17 15 14 19 19 C 1.53291 * 108.23632 * 59.02243 * 18 17 15 20 20 C 1.52941 * 108.97506 * 296.51380 * 19 18 17 21 21 C 1.53054 * 110.70590 * 61.46133 * 20 19 18 22 22 H 1.09004 * 111.76635 * 72.65898 * 21 20 19 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.00899 * 111.00084 * 303.95478 * 10 9 7 27 27 H 1.09002 * 110.03614 * 1.81290 * 13 11 10 28 28 H 1.09002 * 110.03572 * 123.24402 * 13 11 10 29 29 H 1.09004 * 110.59237 * 264.52520 * 14 13 11 30 30 H 1.09000 * 110.76662 * 141.59698 * 14 13 11 31 31 H 1.08997 * 109.07158 * 185.30637 * 17 15 14 32 32 H 1.08995 * 109.07211 * 304.27015 * 17 15 14 33 33 H 1.08999 * 109.70931 * 178.71337 * 18 17 15 34 34 H 1.08998 * 109.70672 * 299.29765 * 18 17 15 35 35 H 1.09002 * 109.62881 * 56.03459 * 19 18 17 36 36 H 1.09001 * 109.62587 * 176.41196 * 19 18 17 37 37 H 1.09004 * 108.84789 * 301.43795 * 20 19 18 38 38 H 1.08997 * 109.72679 * 182.04985 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.5837 -4.8325 -0.5783 13 6 1.1913 -5.3393 1.4434 14 6 1.9612 -6.6597 1.6849 15 6 3.0984 -6.6071 0.6479 16 1 3.8628 -5.9172 1.0051 17 6 3.7238 -7.9592 0.4033 18 6 2.7275 -8.9314 -0.2280 19 6 2.2469 -8.3317 -1.5544 20 6 1.4972 -7.0296 -1.2687 21 6 2.4204 -6.0096 -0.5979 22 1 3.1480 -5.6006 -1.2989 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8405 -3.5487 -0.7819 27 1 1.5300 -4.5757 2.1437 28 1 0.1201 -5.5040 1.5594 29 1 1.3153 -7.5188 1.5032 30 1 2.3653 -6.6920 2.6966 31 1 4.5777 -7.8412 -0.2637 32 1 4.0686 -8.3690 1.3526 33 1 3.2148 -9.8888 -0.4125 34 1 1.8787 -9.0738 0.4408 35 1 3.1047 -8.1199 -2.1927 36 1 1.5829 -9.0361 -2.0554 37 1 0.6587 -7.2441 -0.6061 38 1 1.1183 -6.6111 -2.2011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714302015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:01 Heat of formation + Delta-G solvation = -53.523968 kcal Electronic energy + Delta-G solvation = -15817.817819 eV Core-core repulsion = 13464.383691 eV Total energy + Delta-G solvation = -2353.434129 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.01180 -37.01018 -35.05388 -33.62943 -32.11736 -29.58102 -28.81869 -26.17575 -24.08490 -23.04595 -22.67183 -20.74409 -19.26121 -18.54252 -16.98548 -16.64594 -16.30725 -15.89516 -15.25387 -14.90953 -14.68569 -14.35052 -14.15846 -13.62531 -13.35666 -13.02254 -12.81808 -12.60109 -12.57885 -12.35834 -12.22141 -12.07641 -11.98784 -11.65304 -11.39606 -11.33421 -10.97327 -10.76801 -10.73107 -10.66590 -9.09354 -8.24299 -6.36168 1.39447 1.41873 1.53136 2.38645 3.08663 3.50245 3.61279 3.68722 3.92978 4.19493 4.25454 4.37221 4.39337 4.51359 4.60807 4.64377 4.72673 4.83143 4.86643 4.92470 4.98124 4.99460 5.11097 5.17248 5.22813 5.24666 5.31772 5.34522 5.39017 5.47461 5.54257 5.62320 5.64105 5.70330 6.02957 6.47042 6.74736 6.89755 7.35238 8.87529 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.053522 B = 0.005620 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.025903 B = 4981.442471 C = 4998.362726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.212 3.788 10 N -0.680 5.680 11 C 0.077 3.923 12 H 0.015 0.985 13 C -0.115 4.115 14 C -0.104 4.104 15 C -0.075 4.075 16 H 0.056 0.944 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.110 4.110 21 C -0.075 4.075 22 H 0.072 0.928 23 H 0.265 0.735 24 H -0.004 1.004 25 H -0.046 1.046 26 H 0.331 0.669 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -17.716 -0.735 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.186 1.186 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.311 5.311 11 C -0.033 4.033 12 H 0.033 0.967 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.094 4.094 16 H 0.075 0.925 17 C -0.142 4.142 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.094 4.094 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.014 0.986 25 H -0.028 1.028 26 H 0.149 0.851 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.652 -17.585 -0.045 18.471 hybrid contribution -0.561 1.428 -0.852 1.755 sum 5.091 -16.157 -0.897 16.964 Atomic orbital electron populations 1.70105 1.07917 1.28027 1.51537 1.26000 0.95800 1.03522 0.94478 0.85291 0.78498 0.77740 0.78500 1.19798 1.18646 1.20573 1.21563 0.93786 0.91473 1.50653 0.91762 1.19181 0.90599 0.89141 0.92647 1.60684 1.20134 1.01405 1.48839 1.22627 0.94918 0.89630 0.96160 0.96689 1.22263 0.99156 0.97995 0.95906 1.22262 0.96907 0.95999 0.98959 1.21177 0.96923 0.97107 0.94200 0.92509 1.20987 0.98283 0.93662 1.01261 1.21575 0.99144 0.98228 0.96338 1.21540 1.00036 0.95632 0.97866 1.21546 0.98054 0.95592 0.99581 1.22068 0.96183 0.94318 0.96856 0.90970 0.92599 0.98601 1.02815 0.85119 0.93356 0.92984 0.90337 0.91275 0.91903 0.91144 0.90452 0.91711 0.91940 0.91036 0.92247 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.17 13.29 21.45 0.28 -57.88 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.98 45.26 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.54 -31.74 9.32 25.60 0.24 -31.50 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.21 11.98 5.27 85.55 0.45 12.43 16 10 N -0.68 -30.92 6.20 -489.86 -3.04 -33.96 16 11 C 0.08 2.89 2.57 46.02 0.12 3.01 16 12 H 0.02 0.63 7.44 -2.39 -0.02 0.61 16 13 C -0.11 -4.00 6.46 31.53 0.20 -3.79 16 14 C -0.10 -2.70 5.75 31.52 0.18 -2.52 16 15 C -0.08 -1.92 2.71 -10.82 -0.03 -1.95 16 16 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 17 C -0.10 -1.99 5.38 29.88 0.16 -1.83 16 18 C -0.12 -1.92 5.81 30.64 0.18 -1.74 16 19 C -0.11 -2.09 5.91 30.67 0.18 -1.91 16 20 C -0.11 -2.67 4.68 30.59 0.14 -2.53 16 21 C -0.08 -2.17 3.04 -9.71 -0.03 -2.20 16 22 H 0.07 2.12 7.64 -2.39 -0.02 2.11 16 23 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 24 H 0.00 -0.26 8.13 -2.38 -0.02 -0.27 16 25 H -0.05 -2.79 8.07 -2.39 -0.02 -2.81 16 26 H 0.33 14.36 8.09 -89.69 -0.73 13.64 16 27 H 0.05 1.94 7.92 -2.39 -0.02 1.92 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.77 6.09 -2.38 -0.01 1.75 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.08 6.75 -2.39 -0.02 1.06 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.47 7.12 -2.38 -0.02 1.46 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -65.17 289.33 1.82 -63.35 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.29 Total: 15.26 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 2.26 Total: -34.07 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -2.75 Total: -91.84 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -65.17 1.82 -63.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714302015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.828 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds