Wall clock time and date at job start Mon Mar 30 2020 02:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86806 * 120.00283 * 2 1 4 4 H 1.48495 * 109.47031 * 270.00264 * 3 2 1 5 5 H 1.48501 * 109.46966 * 30.00250 * 3 2 1 6 6 H 1.48501 * 109.47106 * 149.99898 * 3 2 1 7 7 C 1.37877 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99505 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00630 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47516 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47052 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.46768 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99785 * 179.97438 * 12 11 10 14 14 C 1.53784 * 113.61401 * 107.50254 * 13 12 11 15 15 C 1.53778 * 87.08081 * 139.98148 * 14 13 12 16 16 C 1.53001 * 113.61526 * 220.01868 * 15 14 13 17 17 C 1.52996 * 117.50186 * 226.12206 * 16 15 14 18 18 C 1.52998 * 117.49962 * 157.49512 * 16 15 14 19 19 C 1.53778 * 87.08449 * 334.56700 * 15 14 13 20 20 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47590 * 59.99754 * 9 7 2 22 22 H 1.09004 * 109.47028 * 299.99821 * 9 7 2 23 23 H 1.08996 * 109.46815 * 59.99881 * 10 9 7 24 24 H 1.08997 * 109.46908 * 299.99569 * 10 9 7 25 25 H 1.08996 * 109.47321 * 60.00297 * 11 10 9 26 26 H 1.09004 * 109.47347 * 299.99790 * 11 10 9 27 27 H 1.00896 * 111.00321 * 56.04842 * 12 11 10 28 28 H 1.09004 * 112.90923 * 336.24980 * 13 12 11 29 29 H 1.08993 * 113.61313 * 254.52744 * 14 13 12 30 30 H 1.09000 * 113.61578 * 25.43476 * 14 13 12 31 31 H 1.09004 * 113.61886 * 89.12045 * 15 14 13 32 32 H 1.09006 * 115.55061 * 11.82844 * 16 15 14 33 33 H 1.08997 * 117.50071 * 359.97438 * 17 16 15 34 34 H 1.09000 * 117.50536 * 145.02202 * 17 16 15 35 35 H 1.09004 * 117.50007 * 214.97938 * 18 16 15 36 36 H 1.08998 * 117.50195 * 0.02562 * 18 16 15 37 37 H 1.08998 * 113.61879 * 270.88747 * 19 15 14 38 38 H 1.08997 * 113.69304 * 139.98833 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 7 6.0411 -4.0216 -0.0009 13 6 7.5096 -4.0608 -0.0016 14 6 8.1147 -4.5014 1.3418 15 6 9.1394 -5.3073 0.5263 16 6 9.4570 -6.6790 1.1251 17 6 10.9290 -7.0857 1.2179 18 6 10.0159 -7.7483 0.1843 19 6 8.0911 -5.3536 -0.5978 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6809 0.8905 22 1 3.8751 -0.6797 -0.8895 23 1 3.6584 -3.1502 -0.8903 24 1 3.6578 -3.1506 0.8897 25 1 5.9148 -2.1229 0.8899 26 1 5.9148 -2.1227 -0.8901 27 1 5.6656 -4.5375 -0.7825 28 1 7.9581 -3.1533 -0.4058 29 1 8.5559 -3.6833 1.9111 30 1 7.4467 -5.1220 1.9390 31 1 10.0336 -4.7406 0.2664 32 1 8.7921 -7.0088 1.9235 33 1 11.6712 -6.3763 0.8520 34 1 11.2329 -7.6832 2.0775 35 1 9.7191 -8.7816 0.3640 36 1 10.1578 -7.4745 -0.8611 37 1 7.4165 -6.2072 -0.5309 38 1 8.5119 -5.2238 -1.5948 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714640454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:43 Heat of formation + Delta-G solvation = 23.294722 kcal Electronic energy + Delta-G solvation = -14646.298120 eV Core-core repulsion = 12296.195099 eV Total energy + Delta-G solvation = -2350.103020 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.66215 -36.76500 -34.98325 -32.85801 -30.89229 -26.89241 -25.72478 -24.64107 -22.55376 -22.14316 -20.56275 -20.05988 -19.30241 -16.68142 -16.10208 -15.78070 -15.16174 -14.77228 -14.32117 -13.84760 -13.76165 -12.67520 -12.51541 -12.41862 -12.22865 -11.94311 -11.76790 -11.65312 -11.23732 -10.94822 -10.79177 -10.71529 -10.61474 -10.17449 -9.92422 -9.90422 -9.68734 -9.45706 -9.13197 -8.50694 -8.19278 -6.00994 -3.98537 3.32579 3.39822 3.44158 3.54355 4.25688 4.46861 4.48118 4.57101 4.65195 4.76624 4.91045 4.96292 5.03777 5.32964 5.33896 5.39867 5.52428 5.63032 5.68574 5.72755 5.78529 5.84088 5.87570 5.98403 6.00928 6.21303 6.22492 6.36092 6.60862 6.65870 6.95613 7.30930 7.41019 7.48106 7.63134 7.84033 8.58649 9.04725 9.61790 11.12671 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.076849 B = 0.003775 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.263019 B = 7414.957095 C = 7577.083652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.056 3.944 12 N -0.678 5.678 13 C 0.056 3.944 14 C -0.117 4.117 15 C -0.083 4.083 16 C -0.136 4.136 17 C -0.184 4.184 18 C -0.180 4.180 19 C -0.134 4.134 20 H 0.262 0.738 21 H 0.015 0.985 22 H 0.008 0.992 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.339 0.661 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.093 -11.836 0.241 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.073 4.073 12 N -0.309 5.309 13 C -0.054 4.054 14 C -0.156 4.156 15 C -0.101 4.101 16 C -0.154 4.154 17 C -0.221 4.221 18 C -0.217 4.217 19 C -0.172 4.172 20 H 0.072 0.928 21 H 0.034 0.966 22 H 0.027 0.973 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.158 0.842 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.875 -11.777 0.920 23.986 hybrid contribution 0.550 1.221 -0.946 1.639 sum 21.425 -10.556 -0.026 23.884 Atomic orbital electron populations 1.69917 1.06304 1.26816 1.51418 1.25045 0.94737 0.99182 0.94663 0.86762 0.80380 0.83625 0.78416 1.20389 1.21409 1.19023 1.21167 0.89569 0.94455 1.50453 0.91030 1.19543 0.97119 0.92363 0.96065 1.21446 0.91228 0.99593 1.01513 1.22196 0.97525 0.87883 0.99669 1.60666 1.05852 1.14952 1.49395 1.22985 0.88542 0.96627 0.97257 1.23106 0.96667 0.99254 0.96536 1.21978 0.97004 0.94038 0.97115 1.22282 0.96174 0.95221 1.01712 1.23001 0.93531 1.04033 1.01575 1.22906 1.04619 0.97706 0.96449 1.23234 0.98100 0.98392 0.97472 0.92792 0.96643 0.97334 0.93103 0.91963 0.91578 0.95906 0.84241 0.91411 0.92036 0.89160 0.89579 0.87685 0.89013 0.89102 0.89035 0.88926 0.89215 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.03 5.41 -26.73 -0.14 -2.18 16 11 C 0.06 0.94 5.53 -3.82 -0.02 0.92 16 12 N -0.68 -9.70 6.56 -105.86 -0.69 -10.40 16 13 C 0.06 0.67 4.14 -66.90 -0.28 0.40 16 14 C -0.12 -1.30 7.43 -25.92 -0.19 -1.49 16 15 C -0.08 -0.77 3.88 -89.81 -0.35 -1.12 16 16 C -0.14 -1.18 5.55 -90.62 -0.50 -1.68 16 17 C -0.18 -1.42 10.22 -26.73 -0.27 -1.69 16 18 C -0.18 -1.41 10.05 -26.73 -0.27 -1.68 16 19 C -0.13 -1.33 7.02 -25.92 -0.18 -1.51 16 20 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 21 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 22 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.02 0.37 8.13 -51.93 -0.42 -0.05 16 27 H 0.34 4.57 8.54 -39.29 -0.34 4.23 16 28 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.07 7.98 -51.93 -0.41 0.66 16 31 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.11 0.94 7.97 -51.93 -0.41 0.53 16 33 H 0.09 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.92 8.10 -51.93 -0.42 0.49 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -30.48 308.15 -9.69 -40.17 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.99 Total: -0.04 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.75 Total: -24.15 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.08 Total: -38.10 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.48 -9.69 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714640454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.462 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds