Wall clock time and date at job start Mon Mar 30 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86806 * 120.00283 * 2 1 4 4 H 1.48495 * 109.47031 * 270.00264 * 3 2 1 5 5 H 1.48501 * 109.46966 * 30.00250 * 3 2 1 6 6 H 1.48501 * 109.47106 * 149.99898 * 3 2 1 7 7 C 1.37877 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99505 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00630 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47516 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47052 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.46768 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99785 * 179.97438 * 12 11 10 14 14 C 1.53784 * 113.61401 * 107.50254 * 13 12 11 15 15 C 1.53778 * 87.08081 * 139.98148 * 14 13 12 16 16 C 1.53001 * 113.61526 * 220.01868 * 15 14 13 17 17 C 1.52996 * 117.50186 * 226.12206 * 16 15 14 18 18 C 1.52998 * 117.49962 * 157.49512 * 16 15 14 19 19 C 1.53778 * 87.08449 * 334.56700 * 15 14 13 20 20 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47590 * 59.99754 * 9 7 2 22 22 H 1.09004 * 109.47028 * 299.99821 * 9 7 2 23 23 H 1.08996 * 109.46815 * 59.99881 * 10 9 7 24 24 H 1.08997 * 109.46908 * 299.99569 * 10 9 7 25 25 H 1.08996 * 109.47321 * 60.00297 * 11 10 9 26 26 H 1.09004 * 109.47347 * 299.99790 * 11 10 9 27 27 H 1.00896 * 111.00321 * 56.04842 * 12 11 10 28 28 H 1.09004 * 112.90923 * 336.24980 * 13 12 11 29 29 H 1.08993 * 113.61313 * 254.52744 * 14 13 12 30 30 H 1.09000 * 113.61578 * 25.43476 * 14 13 12 31 31 H 1.09004 * 113.61886 * 89.12045 * 15 14 13 32 32 H 1.09006 * 115.55061 * 11.82844 * 16 15 14 33 33 H 1.08997 * 117.50071 * 359.97438 * 17 16 15 34 34 H 1.09000 * 117.50536 * 145.02202 * 17 16 15 35 35 H 1.09004 * 117.50007 * 214.97938 * 18 16 15 36 36 H 1.08998 * 117.50195 * 0.02562 * 18 16 15 37 37 H 1.08998 * 113.61879 * 270.88747 * 19 15 14 38 38 H 1.08997 * 113.69304 * 139.98833 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 7 6.0411 -4.0216 -0.0009 13 6 7.5096 -4.0608 -0.0016 14 6 8.1147 -4.5014 1.3418 15 6 9.1394 -5.3073 0.5263 16 6 9.4570 -6.6790 1.1251 17 6 10.9290 -7.0857 1.2179 18 6 10.0159 -7.7483 0.1843 19 6 8.0911 -5.3536 -0.5978 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6809 0.8905 22 1 3.8751 -0.6797 -0.8895 23 1 3.6584 -3.1502 -0.8903 24 1 3.6578 -3.1506 0.8897 25 1 5.9148 -2.1229 0.8899 26 1 5.9148 -2.1227 -0.8901 27 1 5.6656 -4.5375 -0.7825 28 1 7.9581 -3.1533 -0.4058 29 1 8.5559 -3.6833 1.9111 30 1 7.4467 -5.1220 1.9390 31 1 10.0336 -4.7406 0.2664 32 1 8.7921 -7.0088 1.9235 33 1 11.6712 -6.3763 0.8520 34 1 11.2329 -7.6832 2.0775 35 1 9.7191 -8.7816 0.3640 36 1 10.1578 -7.4745 -0.8611 37 1 7.4165 -6.2072 -0.5309 38 1 8.5119 -5.2238 -1.5948 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714640454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:42 Heat of formation + Delta-G solvation = 5.283236 kcal Electronic energy + Delta-G solvation = -14647.079156 eV Core-core repulsion = 12296.195099 eV Total energy + Delta-G solvation = -2350.884057 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48605 -37.68372 -36.36445 -34.75315 -32.64878 -28.55106 -26.59033 -25.71934 -23.77786 -23.12317 -21.98469 -21.13958 -20.22440 -18.89414 -17.03203 -16.60293 -16.50927 -16.14944 -15.61085 -15.21100 -14.92464 -14.65207 -13.91136 -13.58930 -13.27195 -13.10909 -12.98746 -12.65114 -12.46400 -12.35895 -12.21994 -11.82350 -11.57237 -11.54478 -11.44450 -11.37195 -11.26753 -10.76923 -10.74213 -10.57274 -9.31869 -8.29908 -6.34381 1.35317 1.37879 1.50257 2.36255 2.91535 3.05220 3.26263 3.65416 3.79091 3.88651 3.98555 4.18514 4.19130 4.24733 4.31624 4.38811 4.63293 4.65212 4.72280 4.83597 4.89000 4.93629 4.97784 4.98272 5.08389 5.10045 5.14158 5.30626 5.31281 5.40090 5.49759 5.58157 5.62451 5.66385 6.21164 6.30500 6.51616 6.74009 7.30289 8.87239 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.076849 B = 0.003775 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.263019 B = 7414.957095 C = 7577.083652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.070 3.930 12 N -0.684 5.684 13 C 0.049 3.951 14 C -0.120 4.120 15 C -0.071 4.071 16 C -0.148 4.148 17 C -0.180 4.180 18 C -0.178 4.178 19 C -0.125 4.125 20 H 0.267 0.733 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.031 0.969 27 H 0.343 0.657 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.796 -11.350 -0.103 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.059 4.059 12 N -0.315 5.315 13 C -0.061 4.061 14 C -0.158 4.158 15 C -0.089 4.089 16 C -0.167 4.167 17 C -0.217 4.217 18 C -0.215 4.215 19 C -0.163 4.163 20 H 0.075 0.925 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.162 0.838 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 23.597 -11.317 0.575 26.177 hybrid contribution -0.361 0.967 -0.825 1.322 sum 23.236 -10.349 -0.250 25.438 Atomic orbital electron populations 1.70076 1.08392 1.28224 1.52726 1.26088 0.95683 1.03755 0.94053 0.85584 0.79455 0.77880 0.79273 1.18994 1.20890 1.16956 1.21532 0.92308 0.93073 1.50391 0.95273 1.19489 0.93762 0.95085 0.96447 1.21275 0.94113 0.96877 1.00671 1.21918 0.94461 0.89510 1.00022 1.60612 1.07630 1.13416 1.49880 1.23122 0.86850 0.97811 0.98317 1.23093 0.97076 0.99434 0.96213 1.21898 0.96732 0.94195 0.96111 1.22235 0.97019 0.95219 1.02179 1.23080 0.92923 1.03948 1.01733 1.22966 1.04236 0.97712 0.96566 1.23170 0.97932 0.96963 0.98236 0.92462 0.96256 0.96283 0.93443 0.93432 0.91659 0.95059 0.83765 0.91140 0.91980 0.90333 0.88683 0.88335 0.88414 0.88450 0.88544 0.88587 0.89587 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.00 0.04 5.47 84.66 0.46 0.50 16 3 Si 0.96 45.06 27.47 68.60 1.88 46.94 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 7 C -0.54 -31.96 9.66 25.60 0.25 -31.72 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.69 5.41 30.59 0.17 -3.52 16 11 C 0.07 2.24 5.53 86.30 0.48 2.71 16 12 N -0.68 -18.65 6.56 -488.83 -3.21 -21.86 16 13 C 0.05 1.08 4.14 45.44 0.19 1.26 16 14 C -0.12 -2.48 7.43 31.12 0.23 -2.25 16 15 C -0.07 -1.17 3.88 -10.27 -0.04 -1.21 16 16 C -0.15 -2.32 5.55 -10.80 -0.06 -2.38 16 17 C -0.18 -2.37 10.22 30.59 0.31 -2.06 16 18 C -0.18 -2.42 10.05 30.59 0.31 -2.11 16 19 C -0.13 -2.21 7.02 31.12 0.22 -1.99 16 20 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 21 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 22 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 23 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.03 0.95 8.13 -2.39 -0.02 0.93 16 27 H 0.34 8.81 8.54 -89.70 -0.77 8.04 16 28 H 0.07 1.55 7.87 -2.39 -0.02 1.53 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.81 7.98 -2.39 -0.02 1.79 16 31 H 0.09 1.44 8.08 -2.38 -0.02 1.42 16 32 H 0.10 1.67 7.97 -2.38 -0.02 1.65 16 33 H 0.10 1.17 8.13 -2.39 -0.02 1.16 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -65.68 308.15 1.79 -63.89 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.18 Total: 15.10 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 2.63 Total: -43.12 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -2.91 Total: -82.81 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -65.68 1.79 -63.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714640454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.171 kcal (2) G-P(sol) polarization free energy of solvation -65.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds