Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.46814 * 2 1 4 4 C 1.34953 * 126.03585 * 125.26290 * 3 2 1 5 5 C 1.35323 * 107.74654 * 180.14585 * 4 3 2 6 6 C 1.50690 * 126.04120 * 179.87194 * 5 4 3 7 7 N 1.46498 * 109.47338 * 260.06555 * 6 5 4 8 8 C 1.46499 * 120.00040 * 83.94427 * 7 6 5 9 9 C 1.36934 * 119.99919 * 263.94812 * 7 6 5 10 10 H 1.08000 * 120.00159 * 142.74446 * 9 7 6 11 11 C 1.38821 * 120.00176 * 322.74048 * 9 7 6 12 12 N 1.31620 * 119.99720 * 340.74674 * 11 9 7 13 13 Si 1.86797 * 119.99988 * 160.74116 * 11 9 7 14 14 H 1.48497 * 109.47122 * 90.00541 * 13 11 9 15 15 H 1.48506 * 109.46995 * 210.00253 * 13 11 9 16 16 H 1.48500 * 109.47306 * 330.00358 * 13 11 9 17 17 C 1.39877 * 107.91507 * 359.60749 * 5 4 3 18 18 C 1.50695 * 125.89288 * 180.26205 * 17 5 4 19 19 N 1.30829 * 108.20471 * 0.24283 * 17 5 4 20 20 H 1.09000 * 109.47116 * 299.99707 * 1 2 3 21 21 H 1.08998 * 109.47254 * 60.00390 * 1 2 3 22 22 H 1.09004 * 109.47000 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47002 * 239.99862 * 2 1 3 24 24 H 1.09000 * 109.47345 * 120.00146 * 2 1 3 25 25 H 1.07993 * 126.13006 * 359.97438 * 4 3 2 26 26 H 1.09003 * 109.46967 * 140.06219 * 6 5 4 27 27 H 1.09005 * 109.47454 * 20.06557 * 6 5 4 28 28 H 1.09004 * 109.46991 * 94.27480 * 8 7 6 29 29 H 1.09003 * 109.47366 * 214.26939 * 8 7 6 30 30 H 1.08996 * 109.47608 * 334.27539 * 8 7 6 31 31 H 0.97001 * 119.99509 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.47081 * 89.57717 * 18 17 5 33 33 H 1.09006 * 109.47311 * 209.57590 * 18 17 5 34 34 H 1.08999 * 109.47398 * 329.57440 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8769 1.9197 0.8911 5 6 3.0714 3.2137 0.5462 6 6 3.9547 4.1999 1.2659 7 7 3.1326 5.0547 2.1260 8 6 2.7531 4.5977 3.4652 9 6 2.7190 6.2809 1.6782 10 1 1.7349 6.6452 1.9336 11 6 3.5646 7.0557 0.8961 12 7 4.8590 6.8174 0.8915 13 14 2.8652 8.4363 -0.1499 14 1 2.8480 9.6946 0.6384 15 1 3.7109 8.6199 -1.3568 16 1 1.4810 8.0919 -0.5631 17 6 2.3125 3.4724 -0.5999 18 6 2.2360 4.7881 -1.3306 19 7 1.6808 2.3747 -0.9282 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.3259 1.4102 1.7307 26 1 4.4804 4.8164 0.5367 27 1 4.6797 3.6608 1.8758 28 1 3.4687 4.9767 4.1948 29 1 1.7569 4.9684 3.7069 30 1 2.7513 3.5080 3.4903 31 1 5.4498 7.3586 0.3447 32 1 3.0161 4.8274 -2.0908 33 1 1.2599 4.8833 -1.8065 34 1 2.3765 5.6053 -0.6232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716390383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = 93.780294 kcal Electronic energy + Delta-G solvation = -15745.577133 eV Core-core repulsion = 13294.990253 eV Total energy + Delta-G solvation = -2450.586880 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47903 -35.63088 -34.10800 -31.41167 -30.71415 -29.65054 -27.10453 -25.83370 -25.12875 -22.49103 -21.21538 -19.90989 -18.48454 -16.66097 -16.08163 -15.03729 -14.66684 -13.94086 -13.75267 -13.39270 -13.16752 -12.99543 -12.51779 -12.24466 -11.95880 -11.73237 -11.53532 -11.30483 -11.27222 -11.05322 -10.72542 -10.53626 -10.33437 -10.02173 -9.91736 -9.55807 -8.47193 -8.38315 -7.50378 -6.48306 -5.74927 -3.28242 2.57335 3.08858 3.36856 3.45923 3.48531 3.64038 4.52258 4.75480 5.07677 5.23226 5.37264 5.40456 5.56895 5.64896 5.86605 5.91654 6.08639 6.17991 6.36895 6.49186 6.53077 6.57422 6.77233 6.89726 6.94973 7.07326 7.21396 7.59216 7.67605 7.83274 7.86315 8.49787 8.60371 9.25699 9.87521 10.48204 11.27307 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.034995 B = 0.008974 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.914513 B = 3119.299459 C = 3502.332302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 N -0.390 5.390 4 C 0.026 3.974 5 C -0.212 4.212 6 C 0.214 3.786 7 N -0.585 5.585 8 C 0.127 3.873 9 C -0.250 4.250 10 H 0.058 0.942 11 C 0.012 3.988 12 N -0.889 5.889 13 Si 0.883 3.117 14 H -0.286 1.286 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.099 3.901 18 C -0.087 4.087 19 N -0.317 5.317 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.159 0.841 26 H 0.105 0.895 27 H 0.026 0.974 28 H 0.004 0.996 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.255 0.745 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 -10.951 -1.142 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 N -0.174 5.174 4 C -0.118 4.118 5 C -0.226 4.226 6 C 0.087 3.913 7 N -0.307 5.307 8 C -0.018 4.018 9 C -0.380 4.380 10 H 0.075 0.925 11 C -0.187 4.187 12 N -0.531 5.531 13 Si 0.711 3.289 14 H -0.213 1.213 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.068 4.068 18 C -0.146 4.146 19 N -0.140 5.140 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.176 0.824 26 H 0.122 0.878 27 H 0.044 0.956 28 H 0.022 0.978 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.834 -11.563 -1.993 12.690 hybrid contribution 0.190 0.858 0.128 0.888 sum -4.644 -10.705 -1.865 11.817 Atomic orbital electron populations 1.22036 0.94553 1.01950 1.03539 1.21418 0.95498 0.78791 1.02617 1.48366 1.37133 1.09412 1.22525 1.22243 0.97405 0.95321 0.96842 1.21543 1.07071 0.94742 0.99202 1.19296 0.89458 0.88982 0.93600 1.43682 1.61424 1.15513 1.10103 1.20988 0.97152 0.95731 0.87968 1.19020 0.96595 0.93179 1.29177 0.92463 1.25118 0.94602 0.97038 1.01968 1.69963 1.01679 1.40756 1.40752 0.86651 0.79044 0.82628 0.80547 1.21261 1.21096 1.19870 1.22179 0.94956 0.94191 0.95451 1.20494 1.00756 0.92950 1.00363 1.77089 1.25290 0.97179 1.14424 0.92247 0.91291 0.91464 0.90860 0.89512 0.82357 0.87774 0.95599 0.97833 0.95476 0.95793 0.93466 0.91882 0.92623 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.10 37.16 0.38 -1.50 16 2 C 0.14 1.71 7.23 -4.05 -0.03 1.69 16 3 N -0.39 -6.89 3.68 -61.37 -0.23 -7.12 16 4 C 0.03 0.48 11.36 -17.22 -0.20 0.28 16 5 C -0.21 -4.63 5.67 -105.05 -0.60 -5.23 16 6 C 0.21 5.13 5.31 -5.20 -0.03 5.10 16 7 N -0.59 -14.90 2.82 -182.50 -0.51 -15.41 16 8 C 0.13 2.82 10.71 59.85 0.64 3.46 16 9 C -0.25 -6.78 8.13 -15.06 -0.12 -6.91 16 10 H 0.06 1.58 7.90 -52.49 -0.41 1.16 16 11 C 0.01 0.34 3.95 -17.43 -0.07 0.27 16 12 N -0.89 -25.04 11.40 55.49 0.63 -24.41 16 13 Si 0.88 21.02 28.38 -169.99 -4.82 16.19 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C 0.10 2.18 7.22 -82.41 -0.59 1.59 16 18 C -0.09 -1.86 10.26 36.00 0.37 -1.50 16 19 N -0.32 -6.58 12.42 33.67 0.42 -6.16 16 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 25 H 0.16 2.40 8.06 -52.49 -0.42 1.97 16 26 H 0.10 2.78 5.50 -51.93 -0.29 2.50 16 27 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 28 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 30 H 0.02 0.47 8.04 -51.93 -0.42 0.05 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 2.66 3.63 -51.93 -0.19 2.47 16 LS Contribution 282.63 15.07 4.26 4.26 Total: -1.00 -30.57 282.63 -5.59 -36.15 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.08 Total: -0.76 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.25 Total: -2.75 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.31 Total: -53.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.82 Total: 16.19 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.57 -5.59 -36.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716390383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.934 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds