Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.46814 * 2 1 4 4 C 1.34953 * 126.03585 * 125.26290 * 3 2 1 5 5 C 1.35323 * 107.74654 * 180.14585 * 4 3 2 6 6 C 1.50690 * 126.04120 * 179.87194 * 5 4 3 7 7 N 1.46498 * 109.47338 * 260.06555 * 6 5 4 8 8 C 1.46499 * 120.00040 * 83.94427 * 7 6 5 9 9 C 1.36934 * 119.99919 * 263.94812 * 7 6 5 10 10 H 1.08000 * 120.00159 * 142.74446 * 9 7 6 11 11 C 1.38821 * 120.00176 * 322.74048 * 9 7 6 12 12 N 1.31620 * 119.99720 * 340.74674 * 11 9 7 13 13 Si 1.86797 * 119.99988 * 160.74116 * 11 9 7 14 14 H 1.48497 * 109.47122 * 90.00541 * 13 11 9 15 15 H 1.48506 * 109.46995 * 210.00253 * 13 11 9 16 16 H 1.48500 * 109.47306 * 330.00358 * 13 11 9 17 17 C 1.39877 * 107.91507 * 359.60749 * 5 4 3 18 18 C 1.50695 * 125.89288 * 180.26205 * 17 5 4 19 19 N 1.30829 * 108.20471 * 0.24283 * 17 5 4 20 20 H 1.09000 * 109.47116 * 299.99707 * 1 2 3 21 21 H 1.08998 * 109.47254 * 60.00390 * 1 2 3 22 22 H 1.09004 * 109.47000 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47002 * 239.99862 * 2 1 3 24 24 H 1.09000 * 109.47345 * 120.00146 * 2 1 3 25 25 H 1.07993 * 126.13006 * 359.97438 * 4 3 2 26 26 H 1.09003 * 109.46967 * 140.06219 * 6 5 4 27 27 H 1.09005 * 109.47454 * 20.06557 * 6 5 4 28 28 H 1.09004 * 109.46991 * 94.27480 * 8 7 6 29 29 H 1.09003 * 109.47366 * 214.26939 * 8 7 6 30 30 H 1.08996 * 109.47608 * 334.27539 * 8 7 6 31 31 H 0.97001 * 119.99509 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.47081 * 89.57717 * 18 17 5 33 33 H 1.09006 * 109.47311 * 209.57590 * 18 17 5 34 34 H 1.08999 * 109.47398 * 329.57440 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8769 1.9197 0.8911 5 6 3.0714 3.2137 0.5462 6 6 3.9547 4.1999 1.2659 7 7 3.1326 5.0547 2.1260 8 6 2.7531 4.5977 3.4652 9 6 2.7190 6.2809 1.6782 10 1 1.7349 6.6452 1.9336 11 6 3.5646 7.0557 0.8961 12 7 4.8590 6.8174 0.8915 13 14 2.8652 8.4363 -0.1499 14 1 2.8480 9.6946 0.6384 15 1 3.7109 8.6199 -1.3568 16 1 1.4810 8.0919 -0.5631 17 6 2.3125 3.4724 -0.5999 18 6 2.2360 4.7881 -1.3306 19 7 1.6808 2.3747 -0.9282 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.3259 1.4102 1.7307 26 1 4.4804 4.8164 0.5367 27 1 4.6797 3.6608 1.8758 28 1 3.4687 4.9767 4.1948 29 1 1.7569 4.9684 3.7069 30 1 2.7513 3.5080 3.4903 31 1 5.4498 7.3586 0.3447 32 1 3.0161 4.8274 -2.0908 33 1 1.2599 4.8833 -1.8065 34 1 2.3765 5.6053 -0.6232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716390383.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = 75.032748 kcal Electronic energy + Delta-G solvation = -15746.390087 eV Core-core repulsion = 13294.990253 eV Total energy + Delta-G solvation = -2451.399834 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.97795 -37.44800 -35.41330 -33.38000 -32.13470 -31.26273 -28.62463 -27.69621 -26.82572 -23.74651 -23.00863 -21.42032 -20.05416 -18.56527 -17.48622 -16.66861 -16.28975 -15.51623 -15.38660 -14.97991 -14.74276 -14.66198 -13.94831 -13.82457 -13.41242 -13.23173 -12.95194 -12.93104 -12.81351 -12.56202 -12.36300 -12.28470 -12.06983 -11.91864 -11.82637 -11.20033 -10.42022 -9.94860 -9.04548 -8.48164 -7.78117 -5.35300 1.09518 1.46208 1.50771 1.58885 1.81558 1.99793 2.55674 3.32082 3.68820 4.05015 4.07980 4.13281 4.22046 4.41188 4.50569 4.67256 4.78006 4.82409 4.83413 4.84798 4.94875 5.07943 5.16391 5.23769 5.27849 5.37159 5.51110 5.72246 5.84470 5.98305 6.38759 6.55903 6.97085 7.24400 7.93087 8.47286 9.21284 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.034995 B = 0.008974 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.914513 B = 3119.299459 C = 3502.332302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.125 3.875 3 N -0.379 5.379 4 C 0.048 3.952 5 C -0.248 4.248 6 C 0.224 3.776 7 N -0.603 5.603 8 C 0.129 3.871 9 C -0.259 4.259 10 H 0.047 0.953 11 C -0.020 4.020 12 N -0.916 5.916 13 Si 0.932 3.068 14 H -0.286 1.286 15 H -0.284 1.284 16 H -0.267 1.267 17 C 0.074 3.926 18 C -0.085 4.085 19 N -0.333 5.333 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.104 0.896 23 H 0.089 0.911 24 H 0.125 0.875 25 H 0.198 0.802 26 H 0.072 0.928 27 H 0.030 0.970 28 H -0.001 1.001 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.253 0.747 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 -13.109 -0.872 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.005 3.995 3 N -0.163 5.163 4 C -0.098 4.098 5 C -0.262 4.262 6 C 0.097 3.903 7 N -0.325 5.325 8 C -0.017 4.017 9 C -0.389 4.389 10 H 0.065 0.935 11 C -0.218 4.218 12 N -0.560 5.560 13 Si 0.759 3.241 14 H -0.213 1.213 15 H -0.209 1.209 16 H -0.192 1.192 17 C -0.091 4.091 18 C -0.144 4.144 19 N -0.158 5.158 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.122 0.878 23 H 0.107 0.893 24 H 0.143 0.857 25 H 0.215 0.785 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.017 0.983 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.579 -13.748 -1.732 14.937 hybrid contribution 0.376 1.363 0.081 1.416 sum -5.202 -12.385 -1.652 13.534 Atomic orbital electron populations 1.21997 0.93918 1.03825 1.01745 1.21984 0.96073 0.76099 1.05302 1.48820 1.35820 1.10594 1.21016 1.22664 0.95969 0.94216 0.96932 1.21306 1.08579 0.96065 1.00218 1.19004 0.89627 0.88812 0.92816 1.43937 1.61564 1.15484 1.11551 1.21028 0.96888 0.97338 0.86402 1.19111 0.96181 0.94106 1.29508 0.93539 1.25593 0.94654 0.98849 1.02675 1.70074 1.02626 1.41802 1.41506 0.85875 0.78767 0.80229 0.79201 1.21263 1.20943 1.19175 1.22239 0.95980 0.94717 0.96180 1.20390 1.01523 0.92524 0.99944 1.77018 1.25564 0.97534 1.15689 0.93476 0.93588 0.87772 0.89271 0.85734 0.78495 0.91009 0.95190 0.98259 0.95372 0.93160 0.93767 0.91353 0.91606 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.10 71.98 0.73 -2.36 16 2 C 0.12 2.56 7.23 86.38 0.62 3.18 16 3 N -0.38 -12.27 3.68 -348.08 -1.28 -13.55 16 4 C 0.05 1.64 11.36 83.54 0.95 2.59 16 5 C -0.25 -10.61 5.67 -20.14 -0.11 -10.72 16 6 C 0.22 10.78 5.31 85.63 0.45 11.23 16 7 N -0.60 -30.71 2.82 -731.31 -2.06 -32.77 16 8 C 0.13 5.56 10.71 127.77 1.37 6.93 16 9 C -0.26 -14.24 8.13 84.04 0.68 -13.56 16 10 H 0.05 2.61 7.90 -2.91 -0.02 2.59 16 11 C -0.02 -1.11 3.95 84.86 0.34 -0.77 16 12 N -0.92 -52.67 11.40 21.65 0.25 -52.43 16 13 Si 0.93 43.78 28.38 68.60 1.95 45.73 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 17 C 0.07 3.24 7.22 43.10 0.31 3.55 16 18 C -0.09 -3.70 10.26 71.23 0.73 -2.97 16 19 N -0.33 -13.43 12.42 -47.39 -0.59 -14.01 16 20 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 21 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.12 1.68 8.07 -2.39 -0.02 1.66 16 25 H 0.20 5.01 8.06 -2.91 -0.02 4.98 16 26 H 0.07 3.94 5.50 -2.39 -0.01 3.92 16 27 H 0.03 1.36 8.11 -2.38 -0.02 1.34 16 28 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 29 H 0.03 1.18 8.07 -2.39 -0.02 1.16 16 30 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 31 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.09 4.26 3.63 -2.39 -0.01 4.26 16 Total: -1.00 -66.50 282.63 5.40 -61.10 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.07 Total: 8.83 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.07 Total: -2.89 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -3.68 Total: -112.76 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.95 Total: 45.73 kcal Total: -66.50 5.40 -61.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716390383.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.135 kcal (2) G-P(sol) polarization free energy of solvation -66.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds