Wall clock time and date at job start Mon Mar 30 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00085 * 3 2 1 5 5 H 1.48501 * 109.47128 * 29.99886 * 3 2 1 6 6 H 1.48494 * 109.47287 * 149.99410 * 3 2 1 7 7 C 1.37871 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99705 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 H 1.08997 * 115.54685 * 350.58764 * 14 13 12 16 16 C 1.53003 * 117.49737 * 136.25194 * 14 13 12 17 17 C 1.53000 * 117.50002 * 204.91391 * 14 13 12 18 18 H 1.09004 * 117.49839 * 0.02562 * 17 14 13 19 19 C 1.52998 * 117.49949 * 145.02085 * 17 14 13 20 20 C 1.53006 * 117.49774 * 248.62258 * 19 17 14 21 21 C 1.52999 * 59.99925 * 252.51208 * 20 19 17 22 22 H 0.96993 * 119.99802 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 24 24 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 25 25 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 26 26 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 27 27 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 28 28 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 29 29 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 30 30 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 31 31 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 32 32 H 1.08996 * 117.49526 * 214.97744 * 16 14 13 33 33 H 1.09000 * 117.49829 * 359.97438 * 16 14 13 34 34 H 1.09003 * 115.54919 * 34.32813 * 19 17 14 35 35 H 1.09002 * 117.49973 * 0.02562 * 20 19 17 36 36 H 1.08998 * 117.49554 * 145.01987 * 20 19 17 37 37 H 1.08999 * 117.49604 * 252.51274 * 21 20 19 38 38 H 1.09001 * 117.51940 * 107.47975 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0789 0.0028 13 7 7.5307 -4.0788 0.0033 14 6 8.0571 -5.4503 0.0032 15 1 7.3198 -6.2369 0.1636 16 6 9.2260 -5.7582 -0.9349 17 6 9.4592 -5.6689 0.5754 18 1 9.9908 -4.7951 0.9523 19 6 9.7192 -6.9751 1.3285 20 6 9.9518 -6.8858 2.8381 21 6 11.1212 -7.1935 1.9008 22 1 -0.4849 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8753 -0.6803 -0.8889 25 1 3.6586 -3.1501 -0.8891 26 1 3.6579 -3.1505 0.8908 27 1 5.9142 -2.1229 0.8927 28 1 5.9156 -2.1223 -0.8873 29 1 5.6990 -4.5928 -0.8875 30 1 5.6977 -4.5927 0.8924 31 1 7.8926 -3.5529 -0.7780 32 1 9.2578 -6.7476 -1.3912 33 1 9.6040 -4.9433 -1.5522 34 1 9.1875 -7.8488 0.9516 35 1 9.9192 -5.8966 3.2948 36 1 9.5731 -7.7010 3.4547 37 1 11.5118 -8.2111 1.9007 38 1 11.8585 -6.4069 1.7403 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716583578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:40 Heat of formation + Delta-G solvation = 24.241142 kcal Electronic energy + Delta-G solvation = -14349.103880 eV Core-core repulsion = 11999.041899 eV Total energy + Delta-G solvation = -2350.061980 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.93897 -36.67919 -35.10037 -33.10958 -31.55665 -28.29496 -24.48934 -23.71820 -22.59750 -21.52753 -21.29566 -20.22298 -19.91318 -16.64846 -16.06788 -15.87390 -15.52396 -14.60733 -14.16542 -14.06554 -13.31439 -12.95454 -12.69233 -12.54673 -11.97755 -11.79868 -11.75841 -11.54942 -11.37414 -11.21549 -11.02376 -10.75583 -10.61960 -10.31454 -9.87097 -9.76851 -9.64893 -9.40604 -9.12129 -8.50134 -8.22974 -6.00857 -3.98415 3.28515 3.33521 3.40722 3.45666 3.91152 3.96702 4.48759 4.48865 4.63469 4.70126 4.91049 5.04809 5.09573 5.16267 5.33081 5.37483 5.40569 5.48458 5.51960 5.61739 5.67290 5.82820 5.87964 5.91634 6.06155 6.11433 6.18273 6.38895 6.68356 6.78583 6.92831 7.10382 7.32538 7.37265 7.50225 7.84431 8.58473 9.04430 9.62196 11.12804 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.058074 B = 0.003511 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.029464 B = 7972.499043 C = 7988.444391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.119 4.119 12 C 0.061 3.939 13 N -0.661 5.661 14 C 0.035 3.965 15 H 0.108 0.892 16 C -0.201 4.201 17 C -0.114 4.114 18 H 0.106 0.894 19 C -0.122 4.122 20 C -0.176 4.176 21 C -0.179 4.179 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.010 0.990 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.341 0.659 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.014 -12.801 0.817 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.139 4.139 11 C -0.157 4.157 12 C -0.067 4.067 13 N -0.290 5.290 14 C -0.076 4.076 15 H 0.126 0.874 16 C -0.240 4.240 17 C -0.133 4.133 18 H 0.124 0.876 19 C -0.140 4.140 20 C -0.213 4.213 21 C -0.216 4.216 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.160 0.840 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.877 -12.589 1.503 24.425 hybrid contribution 0.175 0.632 -0.945 1.150 sum 21.052 -11.957 0.558 24.218 Atomic orbital electron populations 1.69925 1.06317 1.26823 1.51473 1.25054 0.94744 0.99232 0.94641 0.86753 0.80399 0.83546 0.78448 1.20367 1.21444 1.18948 1.21197 0.89711 0.94406 1.50459 0.91128 1.19571 0.96942 0.92486 0.96152 1.21412 0.91715 0.99811 1.00980 1.21682 0.97601 0.94492 1.01942 1.22108 0.85577 0.98562 1.00501 1.60226 1.08814 1.10948 1.49056 1.22492 0.90668 0.91779 1.02691 0.87427 1.23527 1.04484 1.03043 0.92923 1.21985 1.00235 0.97002 0.94081 0.87561 1.21695 0.99526 0.97449 0.95321 1.22936 1.02618 1.03201 0.92517 1.22933 0.91519 1.02469 1.04697 0.92808 0.96627 0.97217 0.93029 0.92769 0.91622 0.92730 0.95133 0.90945 0.83991 0.88818 0.88680 0.88046 0.88540 0.88879 0.88973 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 11 C -0.12 -1.93 5.47 -26.73 -0.15 -2.08 16 12 C 0.06 0.84 5.54 -3.82 -0.02 0.82 16 13 N -0.66 -8.14 6.78 -106.72 -0.72 -8.87 16 14 C 0.03 0.37 6.03 -67.71 -0.41 -0.04 16 15 H 0.11 1.16 7.90 -51.93 -0.41 0.75 16 16 C -0.20 -1.81 9.95 -26.69 -0.27 -2.08 16 17 C -0.11 -1.11 5.78 -90.58 -0.52 -1.63 16 18 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 19 C -0.12 -1.06 5.85 -90.62 -0.53 -1.59 16 20 C -0.18 -1.47 10.25 -26.73 -0.27 -1.75 16 21 C -0.18 -1.38 10.25 -26.73 -0.27 -1.65 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.34 3.88 8.51 -39.29 -0.33 3.54 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -30.68 313.82 -10.03 -40.71 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.01 Total: -0.03 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -3.12 Total: -26.34 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.05 Total: -36.59 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.68 -10.03 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716583578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.948 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds