Wall clock time and date at job start Mon Mar 30 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00085 * 3 2 1 5 5 H 1.48501 * 109.47128 * 29.99886 * 3 2 1 6 6 H 1.48494 * 109.47287 * 149.99410 * 3 2 1 7 7 C 1.37871 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99705 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 H 1.08997 * 115.54685 * 350.58764 * 14 13 12 16 16 C 1.53003 * 117.49737 * 136.25194 * 14 13 12 17 17 C 1.53000 * 117.50002 * 204.91391 * 14 13 12 18 18 H 1.09004 * 117.49839 * 0.02562 * 17 14 13 19 19 C 1.52998 * 117.49949 * 145.02085 * 17 14 13 20 20 C 1.53006 * 117.49774 * 248.62258 * 19 17 14 21 21 C 1.52999 * 59.99925 * 252.51208 * 20 19 17 22 22 H 0.96993 * 119.99802 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 24 24 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 25 25 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 26 26 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 27 27 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 28 28 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 29 29 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 30 30 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 31 31 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 32 32 H 1.08996 * 117.49526 * 214.97744 * 16 14 13 33 33 H 1.09000 * 117.49829 * 359.97438 * 16 14 13 34 34 H 1.09003 * 115.54919 * 34.32813 * 19 17 14 35 35 H 1.09002 * 117.49973 * 0.02562 * 20 19 17 36 36 H 1.08998 * 117.49554 * 145.01987 * 20 19 17 37 37 H 1.08999 * 117.49604 * 252.51274 * 21 20 19 38 38 H 1.09001 * 117.51940 * 107.47975 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 6 6.0616 -4.0789 0.0028 13 7 7.5307 -4.0788 0.0033 14 6 8.0571 -5.4503 0.0032 15 1 7.3198 -6.2369 0.1636 16 6 9.2260 -5.7582 -0.9349 17 6 9.4592 -5.6689 0.5754 18 1 9.9908 -4.7951 0.9523 19 6 9.7192 -6.9751 1.3285 20 6 9.9518 -6.8858 2.8381 21 6 11.1212 -7.1935 1.9008 22 1 -0.4849 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8753 -0.6803 -0.8889 25 1 3.6586 -3.1501 -0.8891 26 1 3.6579 -3.1505 0.8908 27 1 5.9142 -2.1229 0.8927 28 1 5.9156 -2.1223 -0.8873 29 1 5.6990 -4.5928 -0.8875 30 1 5.6977 -4.5927 0.8924 31 1 7.8926 -3.5529 -0.7780 32 1 9.2578 -6.7476 -1.3912 33 1 9.6040 -4.9433 -1.5522 34 1 9.1875 -7.8488 0.9516 35 1 9.9192 -5.8966 3.2948 36 1 9.5731 -7.7010 3.4547 37 1 11.5118 -8.2111 1.9007 38 1 11.8585 -6.4069 1.7403 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716583578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:40 Heat of formation + Delta-G solvation = 6.350830 kcal Electronic energy + Delta-G solvation = -14349.879662 eV Core-core repulsion = 11999.041899 eV Total energy + Delta-G solvation = -2350.837762 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70092 -37.64834 -36.39484 -34.84401 -33.21819 -29.93951 -26.10274 -24.50222 -23.23868 -22.77023 -22.41396 -21.59143 -20.90628 -18.85565 -16.94434 -16.71544 -16.54881 -16.31987 -15.66676 -15.00745 -14.77112 -14.46921 -13.85444 -13.76103 -13.47859 -13.27166 -12.87772 -12.55901 -12.36891 -12.28193 -12.10937 -12.08592 -11.78793 -11.74435 -11.38247 -11.36464 -11.22963 -11.05759 -10.76348 -10.37288 -9.13141 -8.29809 -6.34034 1.35783 1.38183 1.50812 2.36672 2.57618 3.04622 3.05524 3.26783 3.75563 3.95386 3.98100 4.09261 4.20446 4.23881 4.35715 4.40734 4.45302 4.47989 4.64685 4.71998 4.81802 4.85760 4.90699 4.92688 5.05713 5.16001 5.19449 5.23823 5.25922 5.28893 5.41772 5.57451 5.65234 5.68386 6.10009 6.29169 6.42915 6.74363 7.30882 8.87258 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.058074 B = 0.003511 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.029464 B = 7972.499043 C = 7988.444391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.536 4.536 8 H 0.030 0.970 9 C -0.013 4.013 10 C -0.095 4.095 11 C -0.107 4.107 12 C 0.071 3.929 13 N -0.666 5.666 14 C 0.018 3.982 15 H 0.106 0.894 16 C -0.186 4.186 17 C -0.112 4.112 18 H 0.098 0.902 19 C -0.131 4.131 20 C -0.184 4.184 21 C -0.170 4.170 22 H 0.266 0.734 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.347 0.653 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.523 -12.574 0.492 26.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.050 4.050 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.058 4.058 13 N -0.296 5.296 14 C -0.092 4.092 15 H 0.124 0.876 16 C -0.224 4.224 17 C -0.132 4.132 18 H 0.116 0.884 19 C -0.149 4.149 20 C -0.221 4.221 21 C -0.207 4.207 22 H 0.075 0.925 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 23.408 -12.383 1.176 26.508 hybrid contribution -0.662 0.475 -0.836 1.167 sum 22.746 -11.908 0.341 25.677 Atomic orbital electron populations 1.70081 1.08368 1.28195 1.52826 1.26091 0.95681 1.03762 0.94093 0.85588 0.79445 0.77916 0.79277 1.18996 1.20936 1.16999 1.21580 0.92448 0.93059 1.50275 0.95207 1.19545 0.93597 0.95437 0.96416 1.21287 0.94613 0.96914 1.00515 1.21497 0.94404 0.96326 1.02269 1.21889 0.86725 0.96707 1.00485 1.60173 1.07659 1.12203 1.49585 1.22519 0.91189 0.90865 1.04647 0.87629 1.23567 1.02499 1.03818 0.92544 1.21972 0.99135 0.97195 0.94872 0.88429 1.21737 1.00604 0.97159 0.95393 1.22983 1.03432 1.03126 0.92522 1.23000 0.91005 1.03283 1.03396 0.92495 0.96365 0.96318 0.93375 0.93528 0.91886 0.91738 0.94756 0.91465 0.83372 0.87704 0.88055 0.87536 0.89350 0.88137 0.87655 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 2 C 0.00 0.00 5.47 84.65 0.46 0.46 16 3 Si 0.95 45.22 27.47 68.60 1.88 47.11 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 7 C -0.54 -31.91 9.66 25.60 0.25 -31.67 16 8 H 0.03 1.95 7.99 -2.90 -0.02 1.92 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.75 5.15 30.59 0.16 -3.59 16 11 C -0.11 -3.28 5.47 30.59 0.17 -3.11 16 12 C 0.07 1.84 5.54 86.30 0.48 2.32 16 13 N -0.67 -15.25 6.78 -491.55 -3.33 -18.58 16 14 C 0.02 0.37 6.03 44.92 0.27 0.64 16 15 H 0.11 2.13 7.90 -2.39 -0.02 2.11 16 16 C -0.19 -2.94 9.95 30.62 0.30 -2.63 16 17 C -0.11 -2.01 5.78 -10.77 -0.06 -2.07 16 18 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 19 C -0.13 -2.07 5.85 -10.79 -0.06 -2.13 16 20 C -0.18 -2.84 10.25 30.60 0.31 -2.53 16 21 C -0.17 -2.29 10.25 30.59 0.31 -1.97 16 22 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 23 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 24 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.35 7.13 8.51 -89.69 -0.76 6.37 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -65.93 313.82 1.74 -64.18 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.18 Total: 14.99 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 2.71 Total: -46.76 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -3.03 Total: -79.52 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Total: -65.93 1.74 -64.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716583578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.533 kcal (2) G-P(sol) polarization free energy of solvation -65.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds