Wall clock time and date at job start Mon Mar 30 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47282 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00101 * 179.97438 * 13 12 11 15 15 H 1.09000 * 115.55330 * 350.57877 * 14 13 12 16 16 C 1.53003 * 117.49988 * 136.25165 * 14 13 12 17 17 C 1.53001 * 117.50276 * 204.91206 * 14 13 12 18 18 H 1.08998 * 117.50418 * 144.99102 * 17 14 13 19 19 C 1.53000 * 117.49436 * 0.02562 * 17 14 13 20 20 C 1.53002 * 117.49943 * 128.62386 * 19 17 14 21 21 C 1.52995 * 117.50314 * 59.99933 * 19 17 14 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 26 26 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 27 27 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 28 28 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 29 29 H 1.09000 * 109.46887 * 300.00672 * 12 11 10 30 30 H 1.08998 * 109.47285 * 60.00156 * 12 11 10 31 31 H 1.00894 * 111.00473 * 56.04826 * 13 12 11 32 32 H 1.09003 * 117.50107 * 214.97681 * 16 14 13 33 33 H 1.08991 * 117.49781 * 0.02562 * 16 14 13 34 34 H 1.09008 * 115.55076 * 274.32376 * 19 17 14 35 35 H 1.08994 * 117.49971 * 359.97438 * 20 19 17 36 36 H 1.09000 * 117.49788 * 145.02209 * 20 19 17 37 37 H 1.09003 * 117.50287 * 214.97967 * 21 19 17 38 38 H 1.09005 * 117.49479 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 6 2.4748 -6.1499 0.0214 13 7 1.7404 -7.4220 0.0260 14 6 2.6649 -8.5636 0.0309 15 1 3.7147 -8.3191 -0.1305 16 6 2.3471 -9.7260 0.9737 17 6 2.1533 -9.8895 -0.5359 18 1 2.8665 -10.5171 -1.0702 19 6 0.7182 -9.9247 -1.0650 20 6 0.4978 -10.4813 -2.4731 21 6 0.3656 -8.9790 -2.2148 22 1 -0.4850 0.8400 0.0004 23 1 0.6245 -2.5529 0.8956 24 1 0.6244 -2.5609 -0.8844 25 1 2.8721 -3.6081 -0.8798 26 1 2.8721 -3.6002 0.9002 27 1 0.8536 -5.0411 0.9058 28 1 0.8541 -5.0485 -0.8741 29 1 3.1020 -6.0959 -0.8684 30 1 3.1009 -6.0883 0.9115 31 1 1.1047 -7.4755 -0.7557 32 1 3.1879 -10.2464 1.4323 33 1 1.4519 -9.6438 1.5899 34 1 -0.0530 -10.1203 -0.3198 35 1 1.3752 -10.8219 -3.0226 36 1 -0.4185 -11.0432 -2.6544 37 1 -0.6375 -8.5526 -2.2264 38 1 1.1562 -8.3314 -2.5941 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716583580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:44 Heat of formation + Delta-G solvation = 23.189373 kcal Electronic energy + Delta-G solvation = -14655.661495 eV Core-core repulsion = 12305.553906 eV Total energy + Delta-G solvation = -2350.107588 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.15101 -36.19754 -34.95593 -33.16777 -31.41692 -27.82755 -24.37511 -23.92640 -22.63932 -21.58469 -21.28283 -20.15812 -19.50634 -16.22049 -15.95319 -15.85907 -15.37543 -14.61107 -14.42887 -13.97984 -13.70335 -12.77736 -12.52662 -12.12261 -11.82494 -11.65753 -11.51754 -11.50983 -11.09278 -10.94769 -10.87155 -10.55981 -10.50408 -10.40346 -10.16277 -9.77255 -9.59533 -9.22138 -8.98125 -8.30140 -8.18033 -5.95208 -3.97495 3.35895 3.39977 3.42568 3.42966 3.83658 4.03315 4.46955 4.50610 4.65993 4.78938 4.97929 5.13485 5.20432 5.31483 5.40056 5.45088 5.47893 5.54574 5.62947 5.69086 5.79451 5.92707 5.93981 6.02112 6.11695 6.19971 6.31899 6.54460 6.85869 6.99925 7.11775 7.28132 7.49130 7.73569 7.89945 8.05942 8.48725 9.09814 9.66167 11.16138 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051975 B = 0.003892 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.596393 B = 7192.445893 C = 7496.189356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.060 3.940 13 N -0.662 5.662 14 C 0.026 3.974 15 H 0.097 0.903 16 C -0.163 4.163 17 C -0.141 4.141 18 H 0.103 0.897 19 C -0.116 4.116 20 C -0.177 4.177 21 C -0.183 4.183 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.346 0.654 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -20.376 -2.461 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.295 5.295 14 C -0.085 4.085 15 H 0.115 0.885 16 C -0.201 4.201 17 C -0.160 4.160 18 H 0.121 0.879 19 C -0.134 4.134 20 C -0.214 4.214 21 C -0.220 4.220 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.797 -20.229 -1.793 20.500 hybrid contribution 0.780 0.975 -0.902 1.540 sum 3.577 -19.255 -2.696 19.769 Atomic orbital electron populations 1.69957 1.06042 1.26617 1.50965 1.25030 0.94846 0.99206 0.95426 0.86670 0.79587 0.83220 0.78580 1.20288 1.21301 1.20263 1.21258 0.92984 0.91241 1.50430 0.92825 1.19093 0.94032 0.91324 0.97162 1.21589 0.99084 0.93909 1.00093 1.21641 0.97907 0.93878 1.01971 1.22129 0.96275 0.88320 1.00131 1.60279 1.18718 1.00644 1.49892 1.22455 0.95729 0.86501 1.03812 0.88517 1.23205 1.03520 1.01691 0.91703 1.22118 0.95795 1.01049 0.97085 0.87879 1.21613 0.95928 1.04617 0.91281 1.22954 1.03103 0.96525 0.98836 1.22982 1.03098 0.92973 1.02977 0.93001 0.96585 0.96740 0.93681 0.93399 0.91616 0.92819 0.95547 0.91146 0.83152 0.88955 0.88212 0.87458 0.88967 0.88794 0.88283 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C -0.12 -2.05 5.47 -26.73 -0.15 -2.20 16 12 C 0.06 0.89 5.54 -3.83 -0.02 0.87 16 13 N -0.66 -8.91 6.56 -106.73 -0.70 -9.61 16 14 C 0.03 0.30 6.22 -67.71 -0.42 -0.12 16 15 H 0.10 1.07 7.90 -51.93 -0.41 0.66 16 16 C -0.16 -1.65 10.18 -26.69 -0.27 -1.92 16 17 C -0.14 -1.38 5.87 -90.58 -0.53 -1.91 16 18 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.12 -1.11 5.38 -90.62 -0.49 -1.60 16 20 C -0.18 -1.48 10.25 -26.73 -0.27 -1.76 16 21 C -0.18 -1.75 8.15 -26.73 -0.22 -1.97 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.35 4.46 5.33 -39.29 -0.21 4.25 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.94 7.73 -51.93 -0.40 0.54 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -30.28 311.60 -10.25 -40.53 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.90 Total: 0.70 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -3.06 Total: -26.54 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.04 Total: -36.38 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.28 -10.25 -40.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716583580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.719 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds