Wall clock time and date at job start Mon Mar 30 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47282 * 180.02562 * 12 11 10 14 14 C 1.46897 * 111.00101 * 179.97438 * 13 12 11 15 15 H 1.09000 * 115.55330 * 350.57877 * 14 13 12 16 16 C 1.53003 * 117.49988 * 136.25165 * 14 13 12 17 17 C 1.53001 * 117.50276 * 204.91206 * 14 13 12 18 18 H 1.08998 * 117.50418 * 144.99102 * 17 14 13 19 19 C 1.53000 * 117.49436 * 0.02562 * 17 14 13 20 20 C 1.53002 * 117.49943 * 128.62386 * 19 17 14 21 21 C 1.52995 * 117.50314 * 59.99933 * 19 17 14 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 26 26 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 27 27 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 28 28 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 29 29 H 1.09000 * 109.46887 * 300.00672 * 12 11 10 30 30 H 1.08998 * 109.47285 * 60.00156 * 12 11 10 31 31 H 1.00894 * 111.00473 * 56.04826 * 13 12 11 32 32 H 1.09003 * 117.50107 * 214.97681 * 16 14 13 33 33 H 1.08991 * 117.49781 * 0.02562 * 16 14 13 34 34 H 1.09008 * 115.55076 * 274.32376 * 19 17 14 35 35 H 1.08994 * 117.49971 * 359.97438 * 20 19 17 36 36 H 1.09000 * 117.49788 * 145.02209 * 20 19 17 37 37 H 1.09003 * 117.50287 * 214.97967 * 21 19 17 38 38 H 1.09005 * 117.49479 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 6 2.4748 -6.1499 0.0214 13 7 1.7404 -7.4220 0.0260 14 6 2.6649 -8.5636 0.0309 15 1 3.7147 -8.3191 -0.1305 16 6 2.3471 -9.7260 0.9737 17 6 2.1533 -9.8895 -0.5359 18 1 2.8665 -10.5171 -1.0702 19 6 0.7182 -9.9247 -1.0650 20 6 0.4978 -10.4813 -2.4731 21 6 0.3656 -8.9790 -2.2148 22 1 -0.4850 0.8400 0.0004 23 1 0.6245 -2.5529 0.8956 24 1 0.6244 -2.5609 -0.8844 25 1 2.8721 -3.6081 -0.8798 26 1 2.8721 -3.6002 0.9002 27 1 0.8536 -5.0411 0.9058 28 1 0.8541 -5.0485 -0.8741 29 1 3.1020 -6.0959 -0.8684 30 1 3.1009 -6.0883 0.9115 31 1 1.1047 -7.4755 -0.7557 32 1 3.1879 -10.2464 1.4323 33 1 1.4519 -9.6438 1.5899 34 1 -0.0530 -10.1203 -0.3198 35 1 1.3752 -10.8219 -3.0226 36 1 -0.4185 -11.0432 -2.6544 37 1 -0.6375 -8.5526 -2.2264 38 1 1.1562 -8.3314 -2.5941 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716583580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:44 Heat of formation + Delta-G solvation = 6.546689 kcal Electronic energy + Delta-G solvation = -14656.383176 eV Core-core repulsion = 12305.553906 eV Total energy + Delta-G solvation = -2350.829269 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.97548 -37.37463 -36.21077 -34.93137 -33.09714 -29.58727 -26.18645 -24.70754 -23.49097 -22.90221 -22.35616 -21.71797 -20.45622 -18.42548 -16.86257 -16.84347 -16.48347 -16.47288 -15.66556 -15.09717 -14.73521 -14.45694 -14.15687 -13.58065 -13.22673 -13.10114 -12.78520 -12.46946 -12.38951 -12.31742 -12.24037 -12.13240 -11.84356 -11.63569 -11.39408 -11.32197 -11.06825 -10.94290 -10.54893 -10.50633 -9.17860 -8.19582 -6.31422 1.39625 1.43271 1.51216 2.41178 2.66559 3.01891 3.12543 3.12949 3.70612 3.91835 4.01644 4.10576 4.18073 4.24436 4.34890 4.44606 4.52088 4.56495 4.64565 4.73655 4.77287 4.90441 4.93064 4.98374 5.04599 5.22541 5.23313 5.27686 5.29448 5.34232 5.36894 5.54307 5.77235 5.86488 6.15958 6.25667 6.46068 6.85835 7.37904 8.92182 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051975 B = 0.003892 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.596393 B = 7192.445893 C = 7496.189356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.106 4.106 12 C 0.072 3.928 13 N -0.671 5.671 14 C 0.007 3.993 15 H 0.103 0.897 16 C -0.160 4.160 17 C -0.129 4.129 18 H 0.118 0.882 19 C -0.126 4.126 20 C -0.163 4.163 21 C -0.194 4.194 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.072 0.928 31 H 0.347 0.653 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 -21.125 -2.774 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.144 4.144 12 C -0.057 4.057 13 N -0.304 5.304 14 C -0.103 4.103 15 H 0.120 0.880 16 C -0.198 4.198 17 C -0.148 4.148 18 H 0.136 0.864 19 C -0.144 4.144 20 C -0.200 4.200 21 C -0.231 4.231 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.236 -21.002 -2.106 21.528 hybrid contribution 0.280 1.172 -0.804 1.449 sum 4.517 -19.829 -2.910 20.544 Atomic orbital electron populations 1.70099 1.07876 1.27855 1.51648 1.26028 0.95806 1.03502 0.94681 0.85477 0.78262 0.77923 0.79240 1.19058 1.20759 1.19123 1.21720 0.93594 0.92515 1.50640 0.92137 1.19027 0.94521 0.93308 0.94620 1.21393 0.97982 0.93522 1.00533 1.21467 0.98071 0.93487 1.01378 1.21898 0.95321 0.87934 1.00561 1.60233 1.19248 1.00695 1.50236 1.22541 0.95651 0.86377 1.05779 0.87966 1.23251 1.03718 1.00846 0.91952 1.22182 0.96026 0.99646 0.96944 0.86392 1.21646 0.95836 1.05193 0.91737 1.23039 1.03947 0.95429 0.97574 1.22974 1.02815 0.93805 1.03500 0.92755 0.99279 0.99196 0.93015 0.92996 0.92702 0.92985 0.94794 0.90991 0.83032 0.87213 0.89192 0.87881 0.88077 0.87699 0.88457 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.30 13.29 21.45 0.28 -58.01 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -32.10 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 11 C -0.11 -3.76 5.47 30.59 0.17 -3.59 16 12 C 0.07 2.06 5.54 86.31 0.48 2.54 16 13 N -0.67 -17.45 6.56 -491.58 -3.23 -20.67 16 14 C 0.01 0.15 6.22 44.92 0.28 0.43 16 15 H 0.10 2.06 7.90 -2.39 -0.02 2.05 16 16 C -0.16 -2.94 10.18 30.62 0.31 -2.63 16 17 C -0.13 -2.26 5.87 -10.77 -0.06 -2.32 16 18 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 19 C -0.13 -2.23 5.38 -10.79 -0.06 -2.28 16 20 C -0.16 -2.41 10.25 30.59 0.31 -2.10 16 21 C -0.19 -3.52 8.15 30.59 0.25 -3.27 16 22 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 23 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 24 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.35 8.74 5.33 -89.70 -0.48 8.27 16 32 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 1.68 7.73 -2.38 -0.02 1.66 16 Total: -1.00 -64.58 311.60 2.29 -62.30 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.52 Total: 16.69 kcal Atomic # 6 Polarization: -50.01 SS G_CDS: 2.68 Total: -47.33 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -2.94 Total: -78.69 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.58 2.29 -62.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716583580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.844 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds