Wall clock time and date at job start Mon Mar 30 2020 02:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48501 * 109.47097 * 240.00262 * 3 2 1 5 5 H 1.48502 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46995 * 119.99720 * 3 2 1 7 7 C 1.37872 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99621 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00474 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47593 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47408 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46975 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.46776 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99704 * 180.02562 * 13 12 11 15 15 H 1.08998 * 115.54836 * 9.32958 * 14 13 12 16 16 C 1.53003 * 117.49642 * 223.62032 * 14 13 12 17 17 C 1.53000 * 60.00026 * 252.51070 * 16 14 13 18 18 H 1.08998 * 117.51836 * 252.52158 * 17 16 14 19 19 C 1.52999 * 117.50239 * 107.48954 * 17 16 14 20 20 C 1.53002 * 117.49968 * 111.37519 * 19 17 16 21 21 C 1.53000 * 60.02940 * 107.50530 * 20 19 17 22 22 H 0.97000 * 120.00462 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47700 * 59.99275 * 9 7 2 24 24 H 1.09002 * 109.46978 * 299.99833 * 9 7 2 25 25 H 1.08998 * 109.47298 * 59.98897 * 10 9 7 26 26 H 1.09002 * 109.46715 * 299.99862 * 10 9 7 27 27 H 1.08999 * 109.46947 * 59.99751 * 11 10 9 28 28 H 1.08999 * 109.46834 * 299.99566 * 11 10 9 29 29 H 1.09005 * 109.47116 * 59.99815 * 12 11 10 30 30 H 1.09002 * 109.47195 * 300.00158 * 12 11 10 31 31 H 1.00894 * 111.00610 * 56.04706 * 13 12 11 32 32 H 1.08996 * 117.49943 * 145.02165 * 16 14 13 33 33 H 1.08998 * 117.50004 * 359.97438 * 16 14 13 34 34 H 1.08999 * 115.55899 * 325.69325 * 19 17 16 35 35 H 1.09002 * 117.49918 * 0.02562 * 20 19 17 36 36 H 1.09002 * 117.49754 * 215.00713 * 20 19 17 37 37 H 1.09008 * 117.49673 * 107.47884 * 21 20 19 38 38 H 1.08999 * 117.49942 * 252.47315 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4746 -6.1500 0.0031 13 7 1.7400 -7.4221 0.0031 14 6 2.6646 -8.5638 0.0043 15 1 3.7144 -8.3183 0.1645 16 6 2.3463 -9.7315 -0.9317 17 6 2.1528 -9.8866 0.5781 18 1 2.8660 -10.5114 1.1156 19 6 0.7175 -9.9192 1.1068 20 6 0.2057 -11.2420 1.6805 21 6 0.5235 -10.0747 2.6171 22 1 -0.4851 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8714 -3.6039 0.8921 26 1 2.8726 -3.6047 -0.8877 27 1 0.8540 -5.0455 -0.8877 28 1 0.8533 -5.0442 0.8923 29 1 3.1012 -6.0918 0.8931 30 1 3.1013 -6.0927 -0.8869 31 1 1.1039 -7.4725 -0.7784 32 1 3.1869 -10.2545 -1.3877 33 1 1.4508 -9.6529 -1.5480 34 1 0.0041 -9.2942 0.5695 35 1 0.8918 -12.0890 1.6817 36 1 -0.8442 -11.4874 1.5204 37 1 -0.3174 -9.5518 3.0730 38 1 1.4183 -10.1540 3.2345 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716583581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:47 Heat of formation + Delta-G solvation = 22.330761 kcal Electronic energy + Delta-G solvation = -14483.716440 eV Core-core repulsion = 12133.571620 eV Total energy + Delta-G solvation = -2350.144821 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.90957 -36.41768 -34.96646 -33.11796 -31.37182 -27.79799 -24.32260 -23.80787 -22.45175 -21.76002 -21.38248 -20.07172 -19.48074 -16.29000 -16.01596 -15.77172 -15.38544 -14.49107 -14.34032 -13.72233 -13.57711 -12.88773 -12.54804 -12.20944 -11.80805 -11.66420 -11.59535 -11.31264 -11.22751 -11.03783 -10.91028 -10.55030 -10.51039 -10.40675 -10.17739 -9.60508 -9.55720 -9.21870 -8.98345 -8.30537 -8.13953 -5.95669 -3.97972 3.35582 3.39677 3.42241 3.43269 4.05820 4.10707 4.43909 4.49468 4.74185 4.83870 5.07106 5.18681 5.25920 5.28932 5.39609 5.46964 5.55001 5.55506 5.59017 5.68025 5.82443 5.93009 6.01247 6.05805 6.18775 6.27407 6.30706 6.53473 6.85140 6.99104 7.08837 7.26008 7.40824 7.73083 7.89412 8.05497 8.48258 9.09395 9.65716 11.15686 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054308 B = 0.003664 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.456200 B = 7640.123974 C = 7916.563070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.061 3.939 13 N -0.655 5.655 14 C 0.034 3.966 15 H 0.107 0.893 16 C -0.202 4.202 17 C -0.116 4.116 18 H 0.100 0.900 19 C -0.101 4.101 20 C -0.189 4.189 21 C -0.173 4.173 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.340 0.660 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -20.660 0.528 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.067 4.067 13 N -0.285 5.285 14 C -0.077 4.077 15 H 0.125 0.875 16 C -0.241 4.241 17 C -0.135 4.135 18 H 0.118 0.882 19 C -0.120 4.120 20 C -0.226 4.226 21 C -0.210 4.210 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.160 0.840 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.931 -20.511 1.210 20.755 hybrid contribution 0.759 0.926 -0.902 1.499 sum 3.690 -19.586 0.308 19.933 Atomic orbital electron populations 1.69959 1.06045 1.26627 1.50961 1.25033 0.94849 0.99218 0.95425 0.86667 0.79586 0.83211 0.78583 1.20296 1.21300 1.20247 1.21258 0.92986 0.91249 1.50434 0.92827 1.19086 0.94026 0.91324 0.97146 1.21587 0.99085 0.93935 1.00084 1.21639 0.97898 0.93858 1.01981 1.22123 0.96257 0.88161 1.00190 1.60213 1.18479 1.00842 1.48921 1.22481 0.96060 0.86428 1.02710 0.87482 1.23507 1.03356 1.04190 0.93041 1.21995 0.96021 1.00511 0.94989 0.88199 1.21489 0.95498 0.99043 0.95926 1.22973 1.01532 0.92458 1.05679 1.22860 1.03128 1.01957 0.93024 0.92995 0.96750 0.96608 0.93427 0.93676 0.92781 0.91625 0.91153 0.95390 0.84045 0.88909 0.88650 0.87468 0.89248 0.89136 0.88870 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C -0.12 -2.00 5.47 -26.73 -0.15 -2.15 16 12 C 0.06 0.87 5.54 -3.83 -0.02 0.85 16 13 N -0.66 -8.30 5.96 -106.72 -0.64 -8.93 16 14 C 0.03 0.38 6.29 -67.71 -0.43 -0.05 16 15 H 0.11 1.14 7.90 -51.93 -0.41 0.73 16 16 C -0.20 -1.88 9.95 -26.73 -0.27 -2.14 16 17 C -0.12 -1.16 5.85 -90.62 -0.53 -1.69 16 18 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.10 -1.05 5.41 -90.58 -0.49 -1.54 16 20 C -0.19 -1.71 10.25 -26.73 -0.27 -1.98 16 21 C -0.17 -1.73 10.26 -26.70 -0.27 -2.00 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.34 4.07 8.52 -39.29 -0.33 3.74 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.11 1.21 7.87 -51.93 -0.41 0.80 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 316.23 15.07 4.77 4.77 Total: -1.00 -30.11 316.23 -10.30 -40.41 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.03 Total: 0.13 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -3.11 Total: -26.60 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.10 Total: -35.69 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.11 -10.30 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716583581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.746 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds