Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48501 * 109.47097 * 240.00262 * 3 2 1 5 5 H 1.48502 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46995 * 119.99720 * 3 2 1 7 7 C 1.37872 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99621 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00474 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47593 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47408 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46975 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.46776 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99704 * 180.02562 * 13 12 11 15 15 H 1.08998 * 115.54836 * 9.32958 * 14 13 12 16 16 C 1.53003 * 117.49642 * 223.62032 * 14 13 12 17 17 C 1.53000 * 60.00026 * 252.51070 * 16 14 13 18 18 H 1.08998 * 117.51836 * 252.52158 * 17 16 14 19 19 C 1.52999 * 117.50239 * 107.48954 * 17 16 14 20 20 C 1.53002 * 117.49968 * 111.37519 * 19 17 16 21 21 C 1.53000 * 60.02940 * 107.50530 * 20 19 17 22 22 H 0.97000 * 120.00462 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47700 * 59.99275 * 9 7 2 24 24 H 1.09002 * 109.46978 * 299.99833 * 9 7 2 25 25 H 1.08998 * 109.47298 * 59.98897 * 10 9 7 26 26 H 1.09002 * 109.46715 * 299.99862 * 10 9 7 27 27 H 1.08999 * 109.46947 * 59.99751 * 11 10 9 28 28 H 1.08999 * 109.46834 * 299.99566 * 11 10 9 29 29 H 1.09005 * 109.47116 * 59.99815 * 12 11 10 30 30 H 1.09002 * 109.47195 * 300.00158 * 12 11 10 31 31 H 1.00894 * 111.00610 * 56.04706 * 13 12 11 32 32 H 1.08996 * 117.49943 * 145.02165 * 16 14 13 33 33 H 1.08998 * 117.50004 * 359.97438 * 16 14 13 34 34 H 1.08999 * 115.55899 * 325.69325 * 19 17 16 35 35 H 1.09002 * 117.49918 * 0.02562 * 20 19 17 36 36 H 1.09002 * 117.49754 * 215.00713 * 20 19 17 37 37 H 1.09008 * 117.49673 * 107.47884 * 21 20 19 38 38 H 1.08999 * 117.49942 * 252.47315 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4746 -6.1500 0.0031 13 7 1.7400 -7.4221 0.0031 14 6 2.6646 -8.5638 0.0043 15 1 3.7144 -8.3183 0.1645 16 6 2.3463 -9.7315 -0.9317 17 6 2.1528 -9.8866 0.5781 18 1 2.8660 -10.5114 1.1156 19 6 0.7175 -9.9192 1.1068 20 6 0.2057 -11.2420 1.6805 21 6 0.5235 -10.0747 2.6171 22 1 -0.4851 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8714 -3.6039 0.8921 26 1 2.8726 -3.6047 -0.8877 27 1 0.8540 -5.0455 -0.8877 28 1 0.8533 -5.0442 0.8923 29 1 3.1012 -6.0918 0.8931 30 1 3.1013 -6.0927 -0.8869 31 1 1.1039 -7.4725 -0.7784 32 1 3.1869 -10.2545 -1.3877 33 1 1.4508 -9.6529 -1.5480 34 1 0.0041 -9.2942 0.5695 35 1 0.8918 -12.0890 1.6817 36 1 -0.8442 -11.4874 1.5204 37 1 -0.3174 -9.5518 3.0730 38 1 1.4183 -10.1540 3.2345 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716583581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = 5.944408 kcal Electronic energy + Delta-G solvation = -14484.427006 eV Core-core repulsion = 12133.571620 eV Total energy + Delta-G solvation = -2350.855386 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73189 -37.50284 -36.32260 -34.87702 -33.00726 -29.53490 -26.14051 -24.58196 -23.22566 -23.00603 -22.59000 -21.63629 -20.38455 -18.43206 -16.99984 -16.71574 -16.53392 -16.45759 -15.57198 -14.75432 -14.61068 -14.43962 -14.13657 -13.55388 -13.23880 -13.15784 -12.79952 -12.56236 -12.35271 -12.30945 -12.15466 -12.12644 -11.97236 -11.72205 -11.37770 -11.31557 -11.03090 -10.99102 -10.54963 -10.28725 -9.07718 -8.19762 -6.31567 1.39487 1.43123 1.51070 2.41046 2.65545 3.12231 3.12780 3.31613 3.68004 3.97874 4.03622 4.12506 4.23661 4.33787 4.41799 4.48492 4.50627 4.56067 4.67450 4.76409 4.84142 4.90755 4.93280 4.97274 5.08400 5.24664 5.28506 5.29172 5.31807 5.35967 5.49121 5.54977 5.77947 5.86851 6.15448 6.25775 6.43849 6.85948 7.37783 8.92008 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054308 B = 0.003664 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.456200 B = 7640.123974 C = 7916.563070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.075 3.925 13 N -0.662 5.662 14 C 0.018 3.982 15 H 0.112 0.888 16 C -0.187 4.187 17 C -0.115 4.115 18 H 0.110 0.890 19 C -0.114 4.114 20 C -0.176 4.176 21 C -0.183 4.183 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.012 1.012 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.343 0.657 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -21.448 0.281 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.054 4.054 13 N -0.292 5.292 14 C -0.093 4.093 15 H 0.129 0.871 16 C -0.226 4.226 17 C -0.134 4.134 18 H 0.128 0.872 19 C -0.132 4.132 20 C -0.212 4.212 21 C -0.220 4.220 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.007 0.993 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.162 0.838 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.389 -21.323 0.963 21.791 hybrid contribution 0.253 1.136 -0.819 1.423 sum 4.642 -20.186 0.145 20.714 Atomic orbital electron populations 1.70101 1.07880 1.27858 1.51678 1.26034 0.95810 1.03521 0.94700 0.85477 0.78263 0.77921 0.79248 1.19062 1.20773 1.19099 1.21729 0.93601 0.92549 1.50596 0.92141 1.19020 0.94519 0.93319 0.94576 1.21394 0.97974 0.93625 1.00490 1.21458 0.98068 0.93423 1.01385 1.21867 0.95232 0.87770 1.00559 1.60143 1.18932 1.00729 1.49359 1.22544 0.95922 0.86199 1.04625 0.87065 1.23539 1.03800 1.02607 0.92650 1.22046 0.95842 0.99786 0.95726 0.87185 1.21492 0.95700 1.00061 0.95993 1.23030 1.02154 0.92099 1.03955 1.22906 1.03206 1.02883 0.92965 0.92755 0.99209 0.99349 0.93100 0.93004 0.92845 0.92817 0.91159 0.94601 0.83756 0.87307 0.88630 0.88775 0.88113 0.88492 0.89349 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -32.05 9.11 25.60 0.23 -31.81 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.06 5.15 30.59 0.16 -3.90 16 11 C -0.11 -3.64 5.47 30.59 0.17 -3.47 16 12 C 0.07 2.05 5.54 86.30 0.48 2.52 16 13 N -0.66 -16.08 5.96 -491.55 -2.93 -19.01 16 14 C 0.02 0.36 6.29 44.92 0.28 0.64 16 15 H 0.11 2.15 7.90 -2.39 -0.02 2.13 16 16 C -0.19 -3.06 9.95 30.60 0.30 -2.76 16 17 C -0.11 -2.08 5.85 -10.79 -0.06 -2.14 16 18 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 19 C -0.11 -2.24 5.41 -10.77 -0.06 -2.30 16 20 C -0.18 -2.87 10.25 30.60 0.31 -2.55 16 21 C -0.18 -3.48 10.26 30.62 0.31 -3.17 16 22 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.34 7.90 8.52 -89.70 -0.76 7.14 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.57 8.09 -2.39 -0.02 1.55 16 34 H 0.09 2.09 7.87 -2.39 -0.02 2.07 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.73 8.14 -2.38 -0.02 1.72 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -64.34 316.23 2.35 -61.99 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.23 Total: 15.33 kcal Atomic # 6 Polarization: -50.01 SS G_CDS: 2.74 Total: -47.27 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -2.65 Total: -77.03 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.34 2.35 -61.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716583581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.931 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds