Wall clock time and date at job start Mon Mar 30 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46807 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.47011 * 179.97438 * 13 12 11 15 15 H 1.09009 * 110.43124 * 54.29473 * 14 13 12 16 16 C 1.54884 * 110.48680 * 291.75889 * 14 13 12 17 17 C 1.54892 * 102.74883 * 203.37768 * 16 14 13 18 18 C 1.54260 * 104.19522 * 37.94262 * 17 16 14 19 19 H 1.08999 * 117.41131 * 196.41321 * 18 17 16 20 20 C 1.52998 * 118.20410 * 41.77693 * 18 17 16 21 21 C 1.54089 * 106.62109 * 336.27786 * 18 17 16 22 22 H 1.09002 * 121.46843 * 222.09067 * 21 18 17 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 1.00898 * 110.99877 * 303.95043 * 11 10 9 29 29 H 1.09006 * 109.46661 * 299.99622 * 12 11 10 30 30 H 1.08995 * 109.47087 * 60.00099 * 12 11 10 31 31 H 1.09002 * 109.47457 * 299.99744 * 13 12 11 32 32 H 1.08995 * 109.47212 * 60.00180 * 13 12 11 33 33 H 1.09000 * 110.75693 * 321.69210 * 16 14 13 34 34 H 1.09004 * 110.75975 * 84.87434 * 16 14 13 35 35 H 1.08997 * 110.48231 * 156.61829 * 17 16 14 36 36 H 1.08999 * 110.48431 * 279.13150 * 17 16 14 37 37 H 1.09003 * 117.45668 * 13.98393 * 20 18 17 38 38 H 1.08995 * 117.46745 * 158.80684 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 6 1.6353 -7.3800 -0.0018 14 6 2.5982 -8.5691 -0.0031 15 1 3.3016 -8.4900 0.8259 16 6 3.3563 -8.6513 -1.3512 17 6 3.7687 -10.1426 -1.4211 18 6 2.5608 -10.8973 -0.8286 19 1 2.7172 -11.9309 -0.5199 20 6 1.1562 -10.4390 -1.2258 21 6 1.8168 -9.8967 0.0766 22 1 1.4268 -10.1918 1.0508 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6043 0.8894 28 1 0.8742 -4.9846 0.7800 29 1 3.0633 -6.0344 -0.8919 30 1 3.0634 -6.0353 0.8882 31 1 1.0077 -7.4213 0.8885 32 1 1.0070 -7.4208 -0.8915 33 1 2.6981 -8.3933 -2.1809 34 1 4.2339 -8.0048 -1.3410 35 1 3.9370 -10.4438 -2.4550 36 1 4.6625 -10.3196 -0.8228 37 1 1.0698 -9.7639 -2.0773 38 1 0.3422 -11.1543 -1.1091 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717091793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:14 Heat of formation + Delta-G solvation = -2.342897 kcal Electronic energy + Delta-G solvation = -14770.207113 eV Core-core repulsion = 12418.992363 eV Total energy + Delta-G solvation = -2351.214751 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.84082 -36.21647 -33.45596 -32.17943 -30.53943 -28.97253 -25.96648 -23.83550 -23.54169 -21.58042 -20.47851 -19.71304 -18.98936 -16.67844 -16.26265 -15.45025 -14.76026 -14.48187 -14.11302 -13.85739 -13.34706 -13.13968 -12.63081 -12.57359 -12.08757 -11.76776 -11.36694 -11.27876 -11.05356 -10.94458 -10.92776 -10.79138 -10.47193 -10.41987 -10.12629 -9.93256 -9.66528 -9.29522 -9.09163 -8.33311 -7.75286 -5.97613 -4.00056 3.32603 3.39741 3.44033 3.51704 4.27810 4.44777 4.50162 4.64533 4.83454 4.98724 5.04307 5.20346 5.33518 5.38226 5.39439 5.47339 5.60912 5.63278 5.67765 5.77645 5.86241 5.97016 6.01709 6.04055 6.12414 6.15616 6.33979 6.38804 6.44393 6.53103 7.01986 7.54168 7.76899 7.87062 8.01695 8.12252 8.46684 9.07553 9.63603 11.13910 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.073396 B = 0.003761 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.401412 B = 7442.634221 C = 7646.023057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.694 5.694 12 C 0.058 3.942 13 C -0.106 4.106 14 C -0.061 4.061 15 H 0.077 0.923 16 C -0.126 4.126 17 C -0.097 4.097 18 C -0.169 4.169 19 H 0.103 0.897 20 C -0.153 4.153 21 C -0.161 4.161 22 H 0.108 0.892 23 H 0.260 0.740 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.057 0.943 27 H 0.014 0.986 28 H 0.335 0.665 29 H 0.066 0.934 30 H 0.019 0.981 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -20.589 -0.720 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.324 5.324 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.080 4.080 15 H 0.095 0.905 16 C -0.164 4.164 17 C -0.134 4.134 18 C -0.188 4.188 19 H 0.122 0.878 20 C -0.190 4.190 21 C -0.179 4.179 22 H 0.126 0.874 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.032 0.968 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.152 0.848 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.837 -20.467 -1.403 21.077 hybrid contribution 0.757 0.917 1.015 1.564 sum 5.594 -19.550 -0.387 20.338 Atomic orbital electron populations 1.69986 1.06030 1.26452 1.50816 1.25014 0.94851 0.99234 0.95346 0.86529 0.80074 0.83778 0.77570 1.19772 1.20970 1.21036 1.21229 0.93024 0.91049 1.50647 0.92723 1.19082 0.94058 0.90490 0.97703 1.22145 0.96945 0.88644 0.98508 1.60586 1.19930 1.02228 1.49668 1.21961 0.94760 0.90633 0.99809 1.21527 0.97717 0.92592 1.02586 1.21561 0.96042 0.92633 0.97775 0.90467 1.22612 1.00293 0.95847 0.97604 1.21921 0.96313 0.94648 1.00533 1.23176 0.92472 0.98353 1.04750 0.87843 1.23290 0.94694 1.02871 0.98157 1.23603 1.03757 0.95518 0.94986 0.87394 0.93060 0.95645 0.96827 0.92479 0.96805 0.84827 0.91553 0.96282 0.92242 0.91094 0.91001 0.91148 0.91704 0.91180 0.88695 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16 11 N -0.69 -12.91 6.50 -113.78 -0.74 -13.65 16 12 C 0.06 0.87 5.55 -3.82 -0.02 0.85 16 13 C -0.11 -1.32 5.01 -26.73 -0.13 -1.46 16 14 C -0.06 -0.65 2.81 -88.96 -0.25 -0.90 16 15 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 16 C -0.13 -1.27 5.12 -24.74 -0.13 -1.39 16 17 C -0.10 -0.85 6.76 -25.07 -0.17 -1.02 16 18 C -0.17 -1.51 6.97 -89.39 -0.62 -2.13 16 19 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.15 -1.40 9.95 -25.25 -0.25 -1.65 16 21 C -0.16 -1.56 6.55 -87.91 -0.58 -2.13 16 22 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.33 6.00 8.73 -39.29 -0.34 5.66 16 29 H 0.07 1.00 7.46 -51.93 -0.39 0.61 16 30 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 33 H 0.07 0.76 7.26 -51.93 -0.38 0.39 16 34 H 0.07 0.70 8.02 -51.93 -0.42 0.29 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.91 7.27 -51.93 -0.38 0.54 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -30.20 305.34 -10.09 -40.28 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.93 Total: 0.22 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.73 Total: -21.78 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.00 Total: -40.25 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.20 -10.09 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717091793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.940 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds