Wall clock time and date at job start Mon Mar 30 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46807 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.47011 * 179.97438 * 13 12 11 15 15 H 1.09009 * 110.43124 * 54.29473 * 14 13 12 16 16 C 1.54884 * 110.48680 * 291.75889 * 14 13 12 17 17 C 1.54892 * 102.74883 * 203.37768 * 16 14 13 18 18 C 1.54260 * 104.19522 * 37.94262 * 17 16 14 19 19 H 1.08999 * 117.41131 * 196.41321 * 18 17 16 20 20 C 1.52998 * 118.20410 * 41.77693 * 18 17 16 21 21 C 1.54089 * 106.62109 * 336.27786 * 18 17 16 22 22 H 1.09002 * 121.46843 * 222.09067 * 21 18 17 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 1.00898 * 110.99877 * 303.95043 * 11 10 9 29 29 H 1.09006 * 109.46661 * 299.99622 * 12 11 10 30 30 H 1.08995 * 109.47087 * 60.00099 * 12 11 10 31 31 H 1.09002 * 109.47457 * 299.99744 * 13 12 11 32 32 H 1.08995 * 109.47212 * 60.00180 * 13 12 11 33 33 H 1.09000 * 110.75693 * 321.69210 * 16 14 13 34 34 H 1.09004 * 110.75975 * 84.87434 * 16 14 13 35 35 H 1.08997 * 110.48231 * 156.61829 * 17 16 14 36 36 H 1.08999 * 110.48431 * 279.13150 * 17 16 14 37 37 H 1.09003 * 117.45668 * 13.98393 * 20 18 17 38 38 H 1.08995 * 117.46745 * 158.80684 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 6 1.6353 -7.3800 -0.0018 14 6 2.5982 -8.5691 -0.0031 15 1 3.3016 -8.4900 0.8259 16 6 3.3563 -8.6513 -1.3512 17 6 3.7687 -10.1426 -1.4211 18 6 2.5608 -10.8973 -0.8286 19 1 2.7172 -11.9309 -0.5199 20 6 1.1562 -10.4390 -1.2258 21 6 1.8168 -9.8967 0.0766 22 1 1.4268 -10.1918 1.0508 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6043 0.8894 28 1 0.8742 -4.9846 0.7800 29 1 3.0633 -6.0344 -0.8919 30 1 3.0634 -6.0353 0.8882 31 1 1.0077 -7.4213 0.8885 32 1 1.0070 -7.4208 -0.8915 33 1 2.6981 -8.3933 -2.1809 34 1 4.2339 -8.0048 -1.3410 35 1 3.9370 -10.4438 -2.4550 36 1 4.6625 -10.3196 -0.8228 37 1 1.0698 -9.7639 -2.0773 38 1 0.3422 -11.1543 -1.1091 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717091793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:14 Heat of formation + Delta-G solvation = -19.601329 kcal Electronic energy + Delta-G solvation = -14770.955495 eV Core-core repulsion = 12418.992363 eV Total energy + Delta-G solvation = -2351.963133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61701 -37.72071 -35.31917 -33.66145 -31.58363 -30.52065 -27.38983 -25.41558 -24.49368 -22.77546 -22.36143 -20.43228 -19.83721 -18.51595 -17.49328 -16.81712 -16.48466 -15.74634 -15.31158 -15.09791 -14.79777 -14.37665 -14.09017 -13.70190 -13.38626 -13.19722 -12.91976 -12.72575 -12.46342 -12.33206 -12.08222 -11.91177 -11.78915 -11.69788 -11.38451 -11.33017 -11.19195 -10.83789 -10.57866 -10.35219 -9.28703 -8.21130 -6.33020 1.40180 1.40970 1.54418 2.40240 2.79130 3.12100 3.35671 3.53962 3.75860 3.96973 4.13993 4.20646 4.29262 4.38081 4.49639 4.56725 4.61056 4.62239 4.73662 4.76662 4.88009 4.92162 4.94599 5.05061 5.14582 5.18350 5.23562 5.33438 5.36868 5.40107 5.44228 5.55128 5.66053 5.78036 6.13827 6.28375 6.55028 6.84341 7.36397 8.91358 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.073396 B = 0.003761 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.401412 B = 7442.634221 C = 7646.023057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.083 3.917 11 N -0.701 5.701 12 C 0.061 3.939 13 C -0.096 4.096 14 C -0.058 4.058 15 H 0.080 0.920 16 C -0.128 4.128 17 C -0.095 4.095 18 C -0.163 4.163 19 H 0.117 0.883 20 C -0.157 4.157 21 C -0.171 4.171 22 H 0.114 0.886 23 H 0.264 0.736 24 H -0.006 1.006 25 H -0.008 1.008 26 H 0.056 0.944 27 H 0.018 0.982 28 H 0.338 0.662 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.362 -21.233 -0.543 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.332 5.332 12 C -0.068 4.068 13 C -0.134 4.134 14 C -0.077 4.077 15 H 0.099 0.901 16 C -0.166 4.166 17 C -0.133 4.133 18 C -0.181 4.181 19 H 0.135 0.865 20 C -0.194 4.194 21 C -0.189 4.189 22 H 0.132 0.868 23 H 0.073 0.927 24 H 0.012 0.988 25 H 0.010 0.990 26 H 0.075 0.925 27 H 0.036 0.964 28 H 0.155 0.845 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.162 -21.135 -1.226 22.049 hybrid contribution 0.305 1.077 0.949 1.467 sum 6.466 -20.058 -0.276 21.076 Atomic orbital electron populations 1.70118 1.07860 1.27803 1.51424 1.26012 0.95811 1.03489 0.94565 0.85335 0.78997 0.78446 0.77859 1.18544 1.20276 1.20217 1.21648 0.93549 0.92257 1.50938 0.92145 1.18941 0.94338 0.92383 0.95057 1.21775 0.95595 0.88577 0.98608 1.60513 1.20592 1.02023 1.50079 1.22026 0.94518 0.90198 1.00075 1.21426 0.97730 0.92094 1.02167 1.21512 0.95780 0.92196 0.98180 0.90146 1.22608 1.00026 0.96969 0.96967 1.21936 0.96629 0.93521 1.01182 1.23269 0.92194 0.98783 1.03855 0.86513 1.23356 0.95488 1.03005 0.97548 1.23617 1.04480 0.95239 0.95558 0.86807 0.92689 0.98767 0.99005 0.92539 0.96398 0.84468 0.91552 0.95572 0.92068 0.92081 0.91908 0.91206 0.91070 0.90312 0.89525 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.67 5.23 29.85 0.16 1.82 16 10 C 0.08 3.67 5.62 86.30 0.49 4.15 16 11 N -0.70 -26.05 6.50 -513.88 -3.34 -29.39 16 12 C 0.06 1.76 5.55 86.30 0.48 2.24 16 13 C -0.10 -2.31 5.01 30.60 0.15 -2.16 16 14 C -0.06 -1.14 2.81 -9.72 -0.03 -1.16 16 15 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 16 C -0.13 -2.42 5.12 31.88 0.16 -2.25 16 17 C -0.10 -1.49 6.76 31.67 0.21 -1.28 16 18 C -0.16 -2.56 6.97 -10.00 -0.07 -2.63 16 19 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 20 C -0.16 -2.64 9.95 31.55 0.31 -2.32 16 21 C -0.17 -3.02 6.55 -9.04 -0.06 -3.08 16 22 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.34 12.16 8.73 -89.70 -0.78 11.38 16 29 H 0.07 1.93 7.46 -2.38 -0.02 1.91 16 30 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.59 8.06 -2.39 -0.02 1.57 16 33 H 0.06 1.29 7.26 -2.39 -0.02 1.27 16 34 H 0.07 1.31 8.02 -2.38 -0.02 1.29 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.60 7.27 -2.39 -0.02 1.58 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.07 305.34 1.69 -62.38 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.22 Total: 15.61 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 2.50 Total: -37.93 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -3.06 Total: -86.90 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -64.07 1.69 -62.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717091793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.774 kcal (2) G-P(sol) polarization free energy of solvation -64.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds