Wall clock time and date at job start Mon Mar 30 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47284 * 269.99831 * 3 2 1 5 5 H 1.48501 * 109.47269 * 30.00010 * 3 2 1 6 6 H 1.48499 * 109.47360 * 149.99794 * 3 2 1 7 7 C 1.37871 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 C 1.54638 * 111.03853 * 287.02428 * 15 14 13 17 17 C 1.51102 * 104.72859 * 217.33686 * 16 15 14 18 18 C 1.30526 * 111.10039 * 16.43290 * 17 16 15 19 19 C 1.51093 * 111.10856 * 0.02562 * 18 17 16 20 20 H 0.96997 * 119.99623 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 22 22 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 23 23 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 24 24 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 25 25 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 26 26 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 27 27 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 28 28 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 29 29 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 32 32 H 1.09000 * 110.91787 * 51.03039 * 15 14 13 33 33 H 1.09002 * 110.38249 * 336.14672 * 16 15 14 34 34 H 1.08992 * 110.38908 * 98.51969 * 16 15 14 35 35 H 1.07994 * 124.45270 * 196.45390 * 17 16 15 36 36 H 1.08012 * 124.44298 * 180.02562 * 18 17 16 37 37 H 1.09004 * 110.38759 * 224.75530 * 19 18 17 38 38 H 1.09001 * 110.39102 * 102.37515 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9870 -0.0033 12 6 2.4746 -6.1499 -0.0037 13 7 1.7401 -7.4221 -0.0048 14 6 2.6646 -8.5638 -0.0046 15 6 1.8645 -9.8679 -0.0065 16 6 1.2125 -10.1211 1.3727 17 6 1.3101 -11.6153 1.5752 18 6 2.1758 -12.1452 0.7545 19 6 2.8003 -11.0928 -0.1316 20 1 -0.4849 0.8401 -0.0004 21 1 0.6248 -2.5562 -0.8919 22 1 0.6241 -2.5574 0.8880 23 1 2.8713 -3.6047 0.8889 24 1 2.8727 -3.6039 -0.8910 25 1 0.8547 -5.0442 -0.8940 26 1 0.8528 -5.0454 0.8860 27 1 3.1006 -6.0930 0.8869 28 1 3.1019 -6.0914 -0.8931 29 1 1.1033 -7.4728 0.7763 30 1 3.2933 -8.5223 -0.8941 31 1 3.2918 -8.5232 0.8859 32 1 1.1161 -9.8642 -0.7989 33 1 1.7611 -9.5954 2.1542 34 1 0.1690 -9.8066 1.3628 35 1 0.7384 -12.1718 2.3030 36 1 2.4143 -13.1979 0.7142 37 1 2.8360 -11.4387 -1.1647 38 1 3.8012 -10.8443 0.2213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717403599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:21 Heat of formation + Delta-G solvation = -16.065707 kcal Electronic energy + Delta-G solvation = -14431.647383 eV Core-core repulsion = 12079.837567 eV Total energy + Delta-G solvation = -2351.809816 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16803 -36.41345 -34.10844 -32.25324 -30.20018 -28.42890 -27.71681 -24.83955 -23.28527 -21.40196 -20.26363 -19.82357 -18.96273 -16.46072 -16.28714 -16.02746 -14.98612 -14.55627 -14.26313 -13.85050 -13.48576 -12.93467 -12.53097 -12.38215 -12.32779 -11.84562 -11.55897 -11.46044 -11.37584 -11.03536 -10.97140 -10.85100 -10.50664 -10.45000 -10.39374 -9.59770 -9.22624 -9.12541 -8.97414 -8.36131 -8.30088 -5.95563 -3.97724 2.01889 3.34324 3.40214 3.43745 4.11037 4.41772 4.47966 4.50819 4.86563 5.02485 5.15734 5.28987 5.39748 5.43658 5.50122 5.51862 5.56211 5.60582 5.68039 5.78036 5.88135 5.94534 6.14895 6.19763 6.26966 6.31477 6.54985 6.64950 6.86101 6.99797 7.08184 7.26672 7.45452 7.73761 7.89977 8.05852 8.48655 9.09879 9.66019 11.15853 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.090467 B = 0.003277 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.432519 B = 8543.044529 C = 8699.203237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.691 5.691 14 C 0.068 3.932 15 C -0.092 4.092 16 C -0.101 4.101 17 C -0.166 4.166 18 C -0.171 4.171 19 C -0.097 4.097 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.025 0.975 28 H 0.069 0.931 29 H 0.339 0.661 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 -21.990 1.718 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.322 5.322 14 C -0.062 4.062 15 C -0.110 4.110 16 C -0.138 4.138 17 C -0.184 4.184 18 C -0.189 4.189 19 C -0.134 4.134 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.939 -21.861 1.032 22.237 hybrid contribution 0.751 0.896 0.991 1.532 sum 4.690 -20.965 2.023 21.578 Atomic orbital electron populations 1.69972 1.06045 1.26501 1.51079 1.25037 0.94850 0.99230 0.95451 0.86608 0.79832 0.83558 0.78082 1.20673 1.21245 1.19930 1.21299 0.93018 0.91241 1.50263 0.92784 1.19093 0.94036 0.91340 0.97156 1.21589 0.99080 0.93989 1.00058 1.21638 0.97886 0.93858 1.01980 1.22079 0.96233 0.88604 1.00068 1.60520 1.19941 1.01736 1.50017 1.21953 0.94179 0.89599 1.00434 1.22096 0.97766 0.93425 0.97749 1.21500 1.01491 0.93785 0.97068 1.23313 0.99181 0.96319 0.99553 1.23277 0.98405 0.98928 0.98259 1.21403 0.99040 0.93486 0.99480 0.93058 0.96595 0.96739 0.93702 0.93453 0.91641 0.92782 0.95664 0.91293 0.84354 0.90985 0.95394 0.89246 0.90903 0.90859 0.86114 0.86107 0.91107 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.12 -2.03 5.47 -26.73 -0.15 -2.17 16 12 C 0.06 0.86 5.69 -3.82 -0.02 0.83 16 13 N -0.69 -8.83 6.50 -113.78 -0.74 -9.57 16 14 C 0.07 0.72 5.04 -3.82 -0.02 0.71 16 15 C -0.09 -0.87 3.36 -88.89 -0.30 -1.17 16 16 C -0.10 -0.92 5.86 -26.83 -0.16 -1.07 16 17 C -0.17 -1.40 10.78 -35.70 -0.38 -1.79 16 18 C -0.17 -1.40 10.77 -35.70 -0.38 -1.78 16 19 C -0.10 -0.81 6.38 -26.82 -0.17 -0.98 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.34 4.08 8.24 -39.29 -0.32 3.76 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.30 7.92 -51.93 -0.41 -0.11 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.67 7.74 -51.93 -0.40 0.27 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -30.40 310.37 -9.63 -40.03 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.01 Total: -1.96 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.27 Total: -23.37 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.00 Total: -36.38 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.40 -9.63 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717403599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.959 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds