Wall clock time and date at job start Mon Mar 30 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47284 * 269.99831 * 3 2 1 5 5 H 1.48501 * 109.47269 * 30.00010 * 3 2 1 6 6 H 1.48499 * 109.47360 * 149.99794 * 3 2 1 7 7 C 1.37871 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47515 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46700 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46916 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 12 16 16 C 1.54638 * 111.03853 * 287.02428 * 15 14 13 17 17 C 1.51102 * 104.72859 * 217.33686 * 16 15 14 18 18 C 1.30526 * 111.10039 * 16.43290 * 17 16 15 19 19 C 1.51093 * 111.10856 * 0.02562 * 18 17 16 20 20 H 0.96997 * 119.99623 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46804 * 59.99500 * 9 7 2 22 22 H 1.09005 * 109.46778 * 300.00160 * 9 7 2 23 23 H 1.08993 * 109.47020 * 59.99491 * 10 9 7 24 24 H 1.09005 * 109.46779 * 300.00252 * 10 9 7 25 25 H 1.08995 * 109.47485 * 60.00352 * 11 10 9 26 26 H 1.08996 * 109.47010 * 299.99144 * 11 10 9 27 27 H 1.09004 * 109.46889 * 60.00145 * 12 11 10 28 28 H 1.08995 * 109.47384 * 299.99786 * 12 11 10 29 29 H 1.00901 * 111.00067 * 303.95263 * 13 12 11 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 32 32 H 1.09000 * 110.91787 * 51.03039 * 15 14 13 33 33 H 1.09002 * 110.38249 * 336.14672 * 16 15 14 34 34 H 1.08992 * 110.38908 * 98.51969 * 16 15 14 35 35 H 1.07994 * 124.45270 * 196.45390 * 17 16 15 36 36 H 1.08012 * 124.44298 * 180.02562 * 18 17 16 37 37 H 1.09004 * 110.38759 * 224.75530 * 19 18 17 38 38 H 1.09001 * 110.39102 * 102.37515 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9870 -0.0033 12 6 2.4746 -6.1499 -0.0037 13 7 1.7401 -7.4221 -0.0048 14 6 2.6646 -8.5638 -0.0046 15 6 1.8645 -9.8679 -0.0065 16 6 1.2125 -10.1211 1.3727 17 6 1.3101 -11.6153 1.5752 18 6 2.1758 -12.1452 0.7545 19 6 2.8003 -11.0928 -0.1316 20 1 -0.4849 0.8401 -0.0004 21 1 0.6248 -2.5562 -0.8919 22 1 0.6241 -2.5574 0.8880 23 1 2.8713 -3.6047 0.8889 24 1 2.8727 -3.6039 -0.8910 25 1 0.8547 -5.0442 -0.8940 26 1 0.8528 -5.0454 0.8860 27 1 3.1006 -6.0930 0.8869 28 1 3.1019 -6.0914 -0.8931 29 1 1.1033 -7.4728 0.7763 30 1 3.2933 -8.5223 -0.8941 31 1 3.2918 -8.5232 0.8859 32 1 1.1161 -9.8642 -0.7989 33 1 1.7611 -9.5954 2.1542 34 1 0.1690 -9.8066 1.3628 35 1 0.7384 -12.1718 2.3030 36 1 2.4143 -13.1979 0.7142 37 1 2.8360 -11.4387 -1.1647 38 1 3.8012 -10.8443 0.2213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717403599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:21 Heat of formation + Delta-G solvation = -33.469134 kcal Electronic energy + Delta-G solvation = -14432.402053 eV Core-core repulsion = 12079.837567 eV Total energy + Delta-G solvation = -2352.564486 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89540 -37.63776 -35.82916 -34.08360 -31.43285 -29.36507 -28.96119 -26.41486 -24.52228 -22.85790 -21.80607 -20.82161 -19.59875 -18.44005 -17.32843 -16.93047 -16.52246 -16.21157 -15.50015 -14.98133 -14.68348 -14.22526 -13.84232 -13.65965 -13.58359 -13.08308 -12.96666 -12.84964 -12.46544 -12.37851 -12.12930 -12.08480 -11.98797 -11.93502 -11.60051 -11.36560 -11.29959 -10.95540 -10.55507 -9.76326 -9.37326 -8.19990 -6.31644 1.39463 1.39513 1.41410 1.52499 2.40938 3.12663 3.15885 3.71907 3.76829 4.04741 4.12785 4.21978 4.39675 4.46697 4.52881 4.60034 4.64079 4.75149 4.82207 4.84956 4.90332 4.93133 4.97269 5.12991 5.13647 5.24679 5.27544 5.35511 5.42685 5.55120 5.65931 5.77995 5.86911 6.03138 6.10208 6.25782 6.46238 6.86056 7.37754 8.92026 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.090467 B = 0.003277 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.432519 B = 8543.044529 C = 8699.203237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.070 3.930 13 N -0.698 5.698 14 C 0.071 3.929 15 C -0.089 4.089 16 C -0.102 4.102 17 C -0.177 4.177 18 C -0.172 4.172 19 C -0.096 4.096 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.011 1.011 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.343 0.657 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.077 0.923 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 -22.619 1.874 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.059 4.059 13 N -0.329 5.329 14 C -0.058 4.058 15 C -0.108 4.108 16 C -0.140 4.140 17 C -0.195 4.195 18 C -0.190 4.190 19 C -0.134 4.134 20 H 0.072 0.928 21 H 0.007 0.993 22 H 0.008 0.992 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.161 0.839 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.096 0.904 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.350 -22.512 1.188 23.169 hybrid contribution 0.271 1.064 0.935 1.442 sum 5.621 -21.447 2.123 22.273 Atomic orbital electron populations 1.70109 1.07877 1.27789 1.51767 1.26035 0.95814 1.03527 0.94727 0.85419 0.78647 0.78261 0.78554 1.19691 1.20651 1.18668 1.21755 0.93586 0.92545 1.50451 0.92173 1.19025 0.94520 0.93308 0.94607 1.21400 0.97983 0.93677 1.00465 1.21469 0.98069 0.93399 1.01462 1.21854 0.95284 0.88232 1.00519 1.60474 1.20392 1.01614 1.50431 1.21970 0.93976 0.89209 1.00641 1.22029 0.97728 0.93349 0.97721 1.21497 1.01279 0.94478 0.96703 1.23453 0.99808 0.95977 1.00265 1.23479 0.98025 0.99714 0.97786 1.21416 0.98927 0.92973 1.00085 0.92754 0.99273 0.99215 0.93111 0.93051 0.92657 0.92871 0.94983 0.91065 0.83923 0.90891 0.94949 0.90215 0.91108 0.91099 0.84941 0.84499 0.90406 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.37 7.74 -2.90 -0.02 3.34 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.10 -4.09 5.15 30.59 0.16 -3.93 16 11 C -0.11 -3.68 5.47 30.59 0.17 -3.51 16 12 C 0.07 1.94 5.69 86.30 0.49 2.43 16 13 N -0.70 -16.98 6.50 -513.88 -3.34 -20.33 16 14 C 0.07 1.41 5.04 86.30 0.44 1.85 16 15 C -0.09 -1.58 3.36 -9.67 -0.03 -1.61 16 16 C -0.10 -1.74 5.86 30.53 0.18 -1.56 16 17 C -0.18 -2.73 10.78 26.26 0.28 -2.44 16 18 C -0.17 -2.49 10.77 26.26 0.28 -2.21 16 19 C -0.10 -1.44 6.38 30.54 0.19 -1.25 16 20 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 21 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 22 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.34 7.91 8.24 -89.69 -0.74 7.17 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.03 0.63 7.92 -2.39 -0.02 0.61 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.22 7.74 -2.39 -0.02 1.20 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.13 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.14 1.50 8.06 -2.90 -0.02 1.48 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.12 7.89 -2.39 -0.02 1.10 16 Total: -1.00 -64.58 310.37 2.22 -62.36 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.25 Total: 11.32 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 3.00 Total: -42.35 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.06 Total: -78.37 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.58 2.22 -62.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717403599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.888 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds