Wall clock time and date at job start Mon Mar 30 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48499 * 109.46769 * 269.99350 * 3 2 1 5 5 H 1.48497 * 109.47238 * 29.99468 * 3 2 1 6 6 H 1.48507 * 109.47149 * 149.99894 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47077 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 11 15 15 H 1.09001 * 115.56142 * 9.34702 * 14 13 12 16 16 C 1.53117 * 117.51078 * 223.60423 * 14 13 12 17 17 C 1.52460 * 59.85897 * 252.55517 * 16 14 13 18 18 C 1.53255 * 128.58228 * 117.60386 * 17 16 14 19 19 C 1.53887 * 86.88325 * 114.94239 * 18 17 16 20 20 C 1.53255 * 128.58310 * 242.39664 * 17 16 14 21 21 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46666 * 60.00155 * 9 7 2 23 23 H 1.09000 * 109.47313 * 299.99994 * 9 7 2 24 24 H 1.08993 * 109.46885 * 60.00477 * 10 9 7 25 25 H 1.09000 * 109.47227 * 300.00302 * 10 9 7 26 26 H 1.08995 * 109.47786 * 59.99734 * 11 10 9 27 27 H 1.09008 * 109.46885 * 300.00227 * 11 10 9 28 28 H 1.09002 * 109.47142 * 60.00048 * 12 11 10 29 29 H 1.09000 * 109.46991 * 299.99792 * 12 11 10 30 30 H 1.00896 * 111.00309 * 56.04370 * 13 12 11 31 31 H 1.08999 * 117.51449 * 0.02562 * 16 14 13 32 32 H 1.09008 * 117.51309 * 145.06605 * 16 14 13 33 33 H 1.09001 * 113.64104 * 229.43958 * 18 17 16 34 34 H 1.09000 * 113.64675 * 0.44298 * 18 17 16 35 35 H 1.08995 * 113.58955 * 270.38962 * 19 18 17 36 36 H 1.09004 * 113.58860 * 139.57073 * 19 18 17 37 37 H 1.08998 * 113.64803 * 359.55659 * 20 17 16 38 38 H 1.09004 * 113.64096 * 130.47007 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7399 -7.4222 0.0005 14 6 2.6644 -8.5638 0.0005 15 1 3.7144 -8.3187 0.1602 16 6 2.3453 -9.7323 -0.9361 17 6 2.1541 -9.8833 0.5689 18 6 0.8608 -10.1530 1.3458 19 6 1.4838 -11.5007 1.7500 20 6 2.8592 -10.8464 1.5302 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 0.8538 -5.0446 -0.8902 27 1 0.8532 -5.0450 0.8897 28 1 3.1005 -6.0923 0.8910 29 1 3.1017 -6.0922 -0.8890 30 1 1.1037 -7.4725 -0.7810 31 1 1.4497 -9.6536 -1.5524 32 1 3.1855 -10.2558 -1.3925 33 1 0.7050 -9.4743 2.1843 34 1 -0.0189 -10.2512 0.7097 35 1 1.2682 -12.3083 1.0505 36 1 1.2926 -11.7761 2.7872 37 1 3.5815 -11.5006 1.0419 38 1 3.2609 -10.3604 2.4193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721295411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:09 Heat of formation + Delta-G solvation = 20.798605 kcal Electronic energy + Delta-G solvation = -14535.337586 eV Core-core repulsion = 12185.126326 eV Total energy + Delta-G solvation = -2350.211260 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.63874 -36.36537 -34.38349 -32.73983 -31.08839 -27.71814 -25.78012 -24.25168 -23.16587 -21.50542 -21.39245 -19.93273 -18.29893 -16.23434 -15.75627 -15.50325 -15.35747 -15.14006 -14.44602 -13.96357 -13.03215 -12.74191 -12.49155 -12.33101 -12.18374 -11.68863 -11.65789 -11.53382 -11.36125 -11.01538 -10.69379 -10.50452 -10.41292 -10.35261 -10.23330 -9.86485 -9.60379 -9.22249 -8.97495 -8.30844 -8.10660 -5.95850 -3.98038 3.34052 3.40036 3.43696 3.61144 3.95496 4.48794 4.52063 4.56263 4.70657 4.71855 4.96908 5.26634 5.38924 5.39814 5.47724 5.54109 5.56358 5.62635 5.68104 5.72589 5.76496 5.92984 5.94701 6.18679 6.22550 6.28642 6.30510 6.53522 6.85094 6.99160 7.09433 7.26297 7.42151 7.73312 7.89381 8.05410 8.48239 9.09528 9.65712 11.15535 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.072252 B = 0.003506 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.439513 B = 7983.275916 C = 8082.948284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.061 3.939 13 N -0.657 5.657 14 C 0.042 3.958 15 H 0.106 0.894 16 C -0.178 4.178 17 C -0.151 4.151 18 C -0.088 4.088 19 C -0.140 4.140 20 C -0.100 4.100 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.341 0.659 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 -21.261 0.543 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.067 4.067 13 N -0.286 5.286 14 C -0.069 4.069 15 H 0.124 0.876 16 C -0.216 4.216 17 C -0.153 4.153 18 C -0.125 4.125 19 C -0.178 4.178 20 C -0.137 4.137 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.160 0.840 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.957 -21.114 1.232 21.517 hybrid contribution 0.758 0.980 -1.011 1.599 sum 4.714 -20.134 0.221 20.680 Atomic orbital electron populations 1.69972 1.06046 1.26505 1.51057 1.25037 0.94851 0.99234 0.95442 0.86607 0.79863 0.83556 0.78051 1.20717 1.21228 1.19893 1.21294 0.93021 0.91232 1.50289 0.92776 1.19093 0.94031 0.91339 0.97156 1.21587 0.99085 0.93925 1.00090 1.21642 0.97896 0.93857 1.01996 1.22128 0.96258 0.88171 1.00185 1.60201 1.18522 1.00827 1.49040 1.22356 0.95981 0.86086 1.02500 0.87599 1.23357 1.03119 1.03600 0.91552 1.22498 0.99359 0.99074 0.94340 1.22281 0.94998 0.96003 0.99233 1.22776 0.96727 0.97110 1.01172 1.22450 0.96362 0.96609 0.98313 0.93057 0.96748 0.96587 0.93423 0.93670 0.92748 0.91645 0.91198 0.95376 0.84004 0.88606 0.88834 0.89416 0.91877 0.90488 0.91540 0.91831 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C -0.12 -2.02 5.47 -26.73 -0.15 -2.17 16 12 C 0.06 0.89 5.54 -3.82 -0.02 0.87 16 13 N -0.66 -8.58 6.76 -106.95 -0.72 -9.30 16 14 C 0.04 0.48 6.31 -67.93 -0.43 0.05 16 15 H 0.11 1.20 7.90 -51.93 -0.41 0.79 16 16 C -0.18 -1.73 10.23 -26.95 -0.28 -2.00 16 17 C -0.15 -1.56 3.02 -154.80 -0.47 -2.03 16 18 C -0.09 -0.89 8.08 -26.14 -0.21 -1.10 16 19 C -0.14 -1.18 8.08 -25.81 -0.21 -1.39 16 20 C -0.10 -0.89 8.10 -26.14 -0.21 -1.11 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.34 4.21 8.52 -39.29 -0.33 3.88 16 31 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -30.23 313.12 -9.99 -40.22 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.05 Total: -1.05 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.66 Total: -24.80 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.01 Total: -36.08 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.23 -9.99 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721295411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.018 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds