Wall clock time and date at job start Mon Mar 30 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48499 * 109.46769 * 269.99350 * 3 2 1 5 5 H 1.48497 * 109.47238 * 29.99468 * 3 2 1 6 6 H 1.48507 * 109.47149 * 149.99894 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47077 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 11 15 15 H 1.09001 * 115.56142 * 9.34702 * 14 13 12 16 16 C 1.53117 * 117.51078 * 223.60423 * 14 13 12 17 17 C 1.52460 * 59.85897 * 252.55517 * 16 14 13 18 18 C 1.53255 * 128.58228 * 117.60386 * 17 16 14 19 19 C 1.53887 * 86.88325 * 114.94239 * 18 17 16 20 20 C 1.53255 * 128.58310 * 242.39664 * 17 16 14 21 21 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46666 * 60.00155 * 9 7 2 23 23 H 1.09000 * 109.47313 * 299.99994 * 9 7 2 24 24 H 1.08993 * 109.46885 * 60.00477 * 10 9 7 25 25 H 1.09000 * 109.47227 * 300.00302 * 10 9 7 26 26 H 1.08995 * 109.47786 * 59.99734 * 11 10 9 27 27 H 1.09008 * 109.46885 * 300.00227 * 11 10 9 28 28 H 1.09002 * 109.47142 * 60.00048 * 12 11 10 29 29 H 1.09000 * 109.46991 * 299.99792 * 12 11 10 30 30 H 1.00896 * 111.00309 * 56.04370 * 13 12 11 31 31 H 1.08999 * 117.51449 * 0.02562 * 16 14 13 32 32 H 1.09008 * 117.51309 * 145.06605 * 16 14 13 33 33 H 1.09001 * 113.64104 * 229.43958 * 18 17 16 34 34 H 1.09000 * 113.64675 * 0.44298 * 18 17 16 35 35 H 1.08995 * 113.58955 * 270.38962 * 19 18 17 36 36 H 1.09004 * 113.58860 * 139.57073 * 19 18 17 37 37 H 1.08998 * 113.64803 * 359.55659 * 20 17 16 38 38 H 1.09004 * 113.64096 * 130.47007 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7399 -7.4222 0.0005 14 6 2.6644 -8.5638 0.0005 15 1 3.7144 -8.3187 0.1602 16 6 2.3453 -9.7323 -0.9361 17 6 2.1541 -9.8833 0.5689 18 6 0.8608 -10.1530 1.3458 19 6 1.4838 -11.5007 1.7500 20 6 2.8592 -10.8464 1.5302 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 0.8538 -5.0446 -0.8902 27 1 0.8532 -5.0450 0.8897 28 1 3.1005 -6.0923 0.8910 29 1 3.1017 -6.0922 -0.8890 30 1 1.1037 -7.4725 -0.7810 31 1 1.4497 -9.6536 -1.5524 32 1 3.1855 -10.2558 -1.3925 33 1 0.7050 -9.4743 2.1843 34 1 -0.0189 -10.2512 0.7097 35 1 1.2682 -12.3083 1.0505 36 1 1.2926 -11.7761 2.7872 37 1 3.5815 -11.5006 1.0419 38 1 3.2609 -10.3604 2.4193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721295411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:09 Heat of formation + Delta-G solvation = 3.703065 kcal Electronic energy + Delta-G solvation = -14536.078905 eV Core-core repulsion = 12185.126326 eV Total energy + Delta-G solvation = -2350.952578 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42805 -37.59270 -35.92820 -34.43743 -32.55885 -29.43714 -26.55748 -26.05432 -23.87127 -23.00961 -22.45592 -21.57272 -19.08483 -18.42701 -16.87608 -16.59359 -16.38003 -16.26067 -16.04888 -15.27500 -14.54383 -14.27761 -13.81453 -13.48532 -13.23471 -13.19353 -12.92691 -12.81282 -12.42147 -12.36060 -12.28146 -12.14300 -12.12780 -11.44748 -11.32761 -11.14033 -11.12240 -11.02736 -10.59131 -10.55752 -9.06884 -8.20202 -6.31889 1.39336 1.41236 1.52482 2.40730 2.78382 3.03720 3.12448 3.72310 3.79770 3.94749 3.99383 4.06616 4.15298 4.27705 4.46597 4.56749 4.61010 4.69553 4.82605 4.85978 4.87942 4.91448 4.94171 5.01503 5.10388 5.18770 5.23243 5.27983 5.34855 5.48839 5.54497 5.57085 5.77292 5.86408 6.13126 6.25390 6.42134 6.85716 7.37499 8.91775 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.072252 B = 0.003506 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.439513 B = 7983.275916 C = 8082.948284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.075 3.925 13 N -0.664 5.664 14 C 0.024 3.976 15 H 0.107 0.893 16 C -0.164 4.164 17 C -0.157 4.157 18 C -0.095 4.095 19 C -0.132 4.132 20 C -0.098 4.098 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.011 1.011 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.344 0.656 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.628 -22.068 0.294 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.054 4.054 13 N -0.293 5.293 14 C -0.087 4.087 15 H 0.125 0.875 16 C -0.202 4.202 17 C -0.159 4.159 18 C -0.133 4.133 19 C -0.169 4.169 20 C -0.135 4.135 21 H 0.072 0.928 22 H 0.008 0.992 23 H 0.007 0.993 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.163 0.837 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.394 -21.945 0.982 22.619 hybrid contribution 0.261 1.206 -0.931 1.545 sum 5.654 -20.738 0.051 21.495 Atomic orbital electron populations 1.70109 1.07876 1.27789 1.51740 1.26036 0.95816 1.03529 0.94716 0.85418 0.78652 0.78248 0.78553 1.19660 1.20671 1.18670 1.21750 0.93591 0.92531 1.50485 0.92162 1.19024 0.94514 0.93309 0.94604 1.21394 0.97983 0.93604 1.00498 1.21461 0.98048 0.93391 1.01442 1.21874 0.95260 0.87766 1.00535 1.60146 1.18977 1.00742 1.49461 1.22405 0.95731 0.85954 1.04605 0.87494 1.23389 1.03625 1.01979 0.91218 1.22669 0.99688 0.98397 0.95112 1.22298 0.95087 0.97016 0.98884 1.22754 0.95890 0.96345 1.01914 1.22468 0.96821 0.96344 0.97914 0.92757 0.99195 0.99302 0.93101 0.92995 0.92780 0.92781 0.91233 0.94601 0.83708 0.88354 0.87348 0.90781 0.92090 0.89539 0.90744 0.90661 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.07 5.15 30.59 0.16 -3.92 16 11 C -0.11 -3.67 5.47 30.59 0.17 -3.50 16 12 C 0.07 2.09 5.54 86.30 0.48 2.57 16 13 N -0.66 -16.73 6.76 -492.27 -3.33 -20.06 16 14 C 0.02 0.50 6.31 44.78 0.28 0.79 16 15 H 0.11 2.25 7.90 -2.39 -0.02 2.23 16 16 C -0.16 -2.84 10.23 30.45 0.31 -2.53 16 17 C -0.16 -3.00 3.02 -52.37 -0.16 -3.15 16 18 C -0.10 -1.83 8.08 30.98 0.25 -1.58 16 19 C -0.13 -1.97 8.08 31.19 0.25 -1.72 16 20 C -0.10 -1.56 8.10 30.98 0.25 -1.31 16 21 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 22 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 23 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.34 8.18 8.52 -89.70 -0.76 7.42 16 31 H 0.10 1.66 8.09 -2.39 -0.02 1.65 16 32 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -64.51 313.12 2.05 -62.46 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.23 Total: 13.07 kcal Atomic # 6 Polarization: -47.34 SS G_CDS: 2.84 Total: -44.50 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -3.04 Total: -78.08 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.51 2.05 -62.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721295411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.163 kcal (2) G-P(sol) polarization free energy of solvation -64.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds