Wall clock time and date at job start Mon Mar 30 2020 02:50:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86801 * 119.99786 * 2 1
4 4 H 1.48501 * 109.46756 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.46933 * 299.99845 * 3 2 1
6 6 H 1.48498 * 109.47326 * 60.00285 * 3 2 1
7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47188 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7
12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9
13 13 N 1.46898 * 109.47006 * 179.97438 * 12 11 10
14 14 C 1.46903 * 110.99673 * 179.97438 * 13 12 11
15 15 H 1.08992 * 115.55973 * 350.65638 * 14 13 12
16 16 C 1.53129 * 117.50943 * 136.39511 * 14 13 12
17 17 C 1.52457 * 59.85625 * 107.44609 * 16 14 13
18 18 C 1.53253 * 128.58160 * 117.60000 * 17 16 14
19 19 C 1.53892 * 86.88668 * 114.94183 * 18 17 16
20 20 C 1.53253 * 128.58690 * 242.39230 * 17 16 14
21 21 H 0.97007 * 119.99867 * 0.02562 * 1 2 3
22 22 H 1.09000 * 109.47722 * 59.99169 * 9 7 2
23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2
24 24 H 1.08996 * 109.47452 * 59.99830 * 10 9 7
25 25 H 1.09001 * 109.46997 * 299.99404 * 10 9 7
26 26 H 1.09001 * 109.47502 * 60.00153 * 11 10 9
27 27 H 1.09001 * 109.47289 * 299.99950 * 11 10 9
28 28 H 1.09001 * 109.47002 * 299.99574 * 12 11 10
29 29 H 1.08993 * 109.46955 * 60.00011 * 12 11 10
30 30 H 1.00895 * 111.00438 * 303.95603 * 13 12 11
31 31 H 1.09004 * 117.51183 * 214.90000 * 16 14 13
32 32 H 1.09000 * 117.51187 * 359.97438 * 16 14 13
33 33 H 1.09000 * 113.64969 * 229.43970 * 18 17 16
34 34 H 1.08998 * 113.65014 * 0.44262 * 18 17 16
35 35 H 1.08992 * 113.58946 * 270.39565 * 19 18 17
36 36 H 1.09001 * 113.66357 * 139.57961 * 19 18 17
37 37 H 1.09001 * 113.64709 * 359.55958 * 20 17 16
38 38 H 1.09005 * 113.65012 * 130.55976 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1940 0.0001
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6620 0.0005
11 6 1.4802 -4.9870 0.0012
12 6 2.4745 -6.1500 0.0005
13 7 1.7400 -7.4221 0.0018
14 6 2.6645 -8.5638 0.0006
15 1 3.7142 -8.3186 -0.1606
16 6 2.3467 -9.7322 0.9379
17 6 2.1533 -9.8833 -0.5668
18 6 2.8571 -10.8465 -1.5289
19 6 1.4815 -11.5010 -1.7468
20 6 0.8591 -10.1531 -1.3418
21 1 -0.4850 0.8401 -0.0004
22 1 0.6246 -2.5571 -0.8896
23 1 0.6241 -2.5566 0.8904
24 1 2.8719 -3.6043 0.8905
25 1 2.8718 -3.6043 -0.8895
26 1 0.8533 -5.0451 -0.8886
27 1 0.8539 -5.0445 0.8914
28 1 3.1005 -6.0923 -0.8900
29 1 3.1018 -6.0922 0.8900
30 1 1.1044 -7.4720 0.7838
31 1 3.1876 -10.2560 1.3927
32 1 1.4520 -9.6534 1.5555
33 1 3.2563 -10.3611 -2.4194
34 1 3.5802 -11.5006 -1.0416
35 1 1.2668 -12.3084 -1.0468
36 1 1.2876 -11.7771 -2.7833
37 1 -0.0198 -10.2513 -0.7046
38 1 0.7019 -9.4746 -2.1803
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000721295412.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:11
Heat of formation + Delta-G solvation = 20.781159 kcal
Electronic energy + Delta-G solvation = -14535.402950 eV
Core-core repulsion = 12185.190934 eV
Total energy + Delta-G solvation = -2350.212016 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.63869 -36.36549 -34.38376 -32.74015 -31.08896 -27.71861 -25.77946 -24.25304
-23.16633 -21.50647 -21.39348 -19.93321 -18.29885 -16.23705 -15.75718 -15.50439
-15.35718 -15.13931 -14.44325 -13.96317 -13.03325 -12.74451 -12.49129 -12.33357
-12.18585 -11.68968 -11.65582 -11.53468 -11.35842 -11.02779 -10.70050 -10.48046
-10.41729 -10.35229 -10.23472 -9.86460 -9.60610 -9.22339 -8.96515 -8.31232
-8.10537 -5.96079 -3.98173 3.33056 3.40248 3.44648 3.61145 3.95446
4.48749 4.52095 4.56236 4.70696 4.71812 4.96863 5.26612 5.38908
5.39746 5.47706 5.54116 5.56348 5.62648 5.68109 5.72642 5.76499
5.92966 5.94678 6.18679 6.22538 6.28613 6.30467 6.53512 6.85057
6.99144 7.09443 7.26313 7.42240 7.73503 7.89266 8.05284 8.48163
9.09630 9.65652 11.15318
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.072249 B = 0.003507 C = 0.003463
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 387.457622 B = 7983.072908 C = 8083.009499
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.055 3.945
3 Si 0.891 3.109
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.519 4.519
8 H 0.055 0.945
9 C 0.020 3.980
10 C -0.109 4.109
11 C -0.116 4.116
12 C 0.061 3.939
13 N -0.657 5.657
14 C 0.042 3.958
15 H 0.106 0.894
16 C -0.178 4.178
17 C -0.151 4.151
18 C -0.100 4.100
19 C -0.141 4.141
20 C -0.088 4.088
21 H 0.259 0.741
22 H 0.016 0.984
23 H 0.014 0.986
24 H 0.045 0.955
25 H 0.047 0.953
26 H 0.065 0.935
27 H 0.054 0.946
28 H 0.070 0.930
29 H 0.028 0.972
30 H 0.341 0.659
31 H 0.093 0.907
32 H 0.096 0.904
33 H 0.084 0.916
34 H 0.063 0.937
35 H 0.076 0.924
36 H 0.066 0.934
37 H 0.062 0.938
38 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.213 -21.271 -0.535 21.691
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.146 4.146
3 Si 0.719 3.281
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.558 4.558
8 H 0.073 0.927
9 C -0.017 4.017
10 C -0.147 4.147
11 C -0.154 4.154
12 C -0.067 4.067
13 N -0.286 5.286
14 C -0.069 4.069
15 H 0.124 0.876
16 C -0.216 4.216
17 C -0.153 4.153
18 C -0.137 4.137
19 C -0.178 4.178
20 C -0.125 4.125
21 H 0.069 0.931
22 H 0.034 0.966
23 H 0.033 0.967
24 H 0.063 0.937
25 H 0.066 0.934
26 H 0.084 0.916
27 H 0.073 0.927
28 H 0.088 0.912
29 H 0.046 0.954
30 H 0.160 0.840
31 H 0.112 0.888
32 H 0.114 0.886
33 H 0.102 0.898
34 H 0.082 0.918
35 H 0.095 0.905
36 H 0.085 0.915
37 H 0.081 0.919
38 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 3.974 -21.127 -1.217 21.532
hybrid contribution 0.743 0.984 0.996 1.585
sum 4.717 -20.144 -0.221 20.690
Atomic orbital electron populations
1.69985 1.06044 1.26389 1.51155 1.25041 0.94851 0.99248 0.95455
0.86554 0.80120 0.83886 0.77548 1.19767 1.21025 1.21048 1.21332
0.93057 0.91216 1.50146 0.92720 1.19097 0.94039 0.91359 0.97163
1.21586 0.99082 0.93922 1.00092 1.21644 0.97896 0.93857 1.01994
1.22126 0.96255 0.88169 1.00184 1.60180 1.18584 1.00831 1.49021
1.22354 0.95975 0.86079 1.02496 0.87598 1.23359 1.03120 1.03601
0.91548 1.22495 0.99349 0.99074 0.94354 1.22449 0.96364 0.96606
0.98304 1.22777 0.96738 0.97107 1.01178 1.22281 0.94991 0.96003
0.99242 0.93116 0.96598 0.96729 0.93667 0.93424 0.91647 0.92747
0.91194 0.95385 0.83990 0.88833 0.88604 0.89798 0.91821 0.90500
0.91541 0.91880 0.89416
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16
2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16
3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16
4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16
5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16
8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16
9 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16
10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16
11 C -0.12 -2.02 5.47 -26.73 -0.15 -2.17 16
12 C 0.06 0.89 5.54 -3.82 -0.02 0.87 16
13 N -0.66 -8.58 6.76 -106.95 -0.72 -9.30 16
14 C 0.04 0.48 6.32 -67.92 -0.43 0.05 16
15 H 0.11 1.20 7.90 -51.93 -0.41 0.79 16
16 C -0.18 -1.73 10.23 -26.94 -0.28 -2.00 16
17 C -0.15 -1.56 3.02 -154.80 -0.47 -2.03 16
18 C -0.10 -0.89 8.10 -26.14 -0.21 -1.10 16
19 C -0.14 -1.19 8.08 -25.81 -0.21 -1.39 16
20 C -0.09 -0.89 8.08 -26.14 -0.21 -1.10 16
21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16
24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16
25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16
26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16
30 H 0.34 4.21 8.52 -39.29 -0.33 3.88 16
31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16
33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16
34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
LS Contribution 313.12 15.07 4.72 4.72
Total: -1.00 -30.24 313.12 -9.99 -40.23
By element:
Atomic # 1 Polarization: 5.96 SS G_CDS: -7.05 Total: -1.09 kcal
Atomic # 6 Polarization: -22.13 SS G_CDS: -2.66 Total: -24.79 kcal
Atomic # 7 Polarization: -36.08 SS G_CDS: 0.01 Total: -36.07 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal
Total LS contribution 4.72 Total: 4.72 kcal
Total: -30.24 -9.99 -40.23 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000721295412.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.015 kcal
(2) G-P(sol) polarization free energy of solvation -30.239 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.776 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.781 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds