Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48501 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46933 * 299.99845 * 3 2 1 6 6 H 1.48498 * 109.47326 * 60.00285 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99673 * 179.97438 * 13 12 11 15 15 H 1.08992 * 115.55973 * 350.65638 * 14 13 12 16 16 C 1.53129 * 117.50943 * 136.39511 * 14 13 12 17 17 C 1.52457 * 59.85625 * 107.44609 * 16 14 13 18 18 C 1.53253 * 128.58160 * 117.60000 * 17 16 14 19 19 C 1.53892 * 86.88668 * 114.94183 * 18 17 16 20 20 C 1.53253 * 128.58690 * 242.39230 * 17 16 14 21 21 H 0.97007 * 119.99867 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47722 * 59.99169 * 9 7 2 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08996 * 109.47452 * 59.99830 * 10 9 7 25 25 H 1.09001 * 109.46997 * 299.99404 * 10 9 7 26 26 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 27 27 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 28 28 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 29 29 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 30 30 H 1.00895 * 111.00438 * 303.95603 * 13 12 11 31 31 H 1.09004 * 117.51183 * 214.90000 * 16 14 13 32 32 H 1.09000 * 117.51187 * 359.97438 * 16 14 13 33 33 H 1.09000 * 113.64969 * 229.43970 * 18 17 16 34 34 H 1.08998 * 113.65014 * 0.44262 * 18 17 16 35 35 H 1.08992 * 113.58946 * 270.39565 * 19 18 17 36 36 H 1.09001 * 113.66357 * 139.57961 * 19 18 17 37 37 H 1.09001 * 113.64709 * 359.55958 * 20 17 16 38 38 H 1.09005 * 113.65012 * 130.55976 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 2.4745 -6.1500 0.0005 13 7 1.7400 -7.4221 0.0018 14 6 2.6645 -8.5638 0.0006 15 1 3.7142 -8.3186 -0.1606 16 6 2.3467 -9.7322 0.9379 17 6 2.1533 -9.8833 -0.5668 18 6 2.8571 -10.8465 -1.5289 19 6 1.4815 -11.5010 -1.7468 20 6 0.8591 -10.1531 -1.3418 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5566 0.8904 24 1 2.8719 -3.6043 0.8905 25 1 2.8718 -3.6043 -0.8895 26 1 0.8533 -5.0451 -0.8886 27 1 0.8539 -5.0445 0.8914 28 1 3.1005 -6.0923 -0.8900 29 1 3.1018 -6.0922 0.8900 30 1 1.1044 -7.4720 0.7838 31 1 3.1876 -10.2560 1.3927 32 1 1.4520 -9.6534 1.5555 33 1 3.2563 -10.3611 -2.4194 34 1 3.5802 -11.5006 -1.0416 35 1 1.2668 -12.3084 -1.0468 36 1 1.2876 -11.7771 -2.7833 37 1 -0.0198 -10.2513 -0.7046 38 1 0.7019 -9.4746 -2.1803 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721295412.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = 20.781159 kcal Electronic energy + Delta-G solvation = -14535.402950 eV Core-core repulsion = 12185.190934 eV Total energy + Delta-G solvation = -2350.212016 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.63869 -36.36549 -34.38376 -32.74015 -31.08896 -27.71861 -25.77946 -24.25304 -23.16633 -21.50647 -21.39348 -19.93321 -18.29885 -16.23705 -15.75718 -15.50439 -15.35718 -15.13931 -14.44325 -13.96317 -13.03325 -12.74451 -12.49129 -12.33357 -12.18585 -11.68968 -11.65582 -11.53468 -11.35842 -11.02779 -10.70050 -10.48046 -10.41729 -10.35229 -10.23472 -9.86460 -9.60610 -9.22339 -8.96515 -8.31232 -8.10537 -5.96079 -3.98173 3.33056 3.40248 3.44648 3.61145 3.95446 4.48749 4.52095 4.56236 4.70696 4.71812 4.96863 5.26612 5.38908 5.39746 5.47706 5.54116 5.56348 5.62648 5.68109 5.72642 5.76499 5.92966 5.94678 6.18679 6.22538 6.28613 6.30467 6.53512 6.85057 6.99144 7.09443 7.26313 7.42240 7.73503 7.89266 8.05284 8.48163 9.09630 9.65652 11.15318 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.072249 B = 0.003507 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.457622 B = 7983.072908 C = 8083.009499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.061 3.939 13 N -0.657 5.657 14 C 0.042 3.958 15 H 0.106 0.894 16 C -0.178 4.178 17 C -0.151 4.151 18 C -0.100 4.100 19 C -0.141 4.141 20 C -0.088 4.088 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.014 0.986 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.028 0.972 30 H 0.341 0.659 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -21.271 -0.535 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.067 4.067 13 N -0.286 5.286 14 C -0.069 4.069 15 H 0.124 0.876 16 C -0.216 4.216 17 C -0.153 4.153 18 C -0.137 4.137 19 C -0.178 4.178 20 C -0.125 4.125 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.160 0.840 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.974 -21.127 -1.217 21.532 hybrid contribution 0.743 0.984 0.996 1.585 sum 4.717 -20.144 -0.221 20.690 Atomic orbital electron populations 1.69985 1.06044 1.26389 1.51155 1.25041 0.94851 0.99248 0.95455 0.86554 0.80120 0.83886 0.77548 1.19767 1.21025 1.21048 1.21332 0.93057 0.91216 1.50146 0.92720 1.19097 0.94039 0.91359 0.97163 1.21586 0.99082 0.93922 1.00092 1.21644 0.97896 0.93857 1.01994 1.22126 0.96255 0.88169 1.00184 1.60180 1.18584 1.00831 1.49021 1.22354 0.95975 0.86079 1.02496 0.87598 1.23359 1.03120 1.03601 0.91548 1.22495 0.99349 0.99074 0.94354 1.22449 0.96364 0.96606 0.98304 1.22777 0.96738 0.97107 1.01178 1.22281 0.94991 0.96003 0.99242 0.93116 0.96598 0.96729 0.93667 0.93424 0.91647 0.92747 0.91194 0.95385 0.83990 0.88833 0.88604 0.89798 0.91821 0.90500 0.91541 0.91880 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C -0.12 -2.02 5.47 -26.73 -0.15 -2.17 16 12 C 0.06 0.89 5.54 -3.82 -0.02 0.87 16 13 N -0.66 -8.58 6.76 -106.95 -0.72 -9.30 16 14 C 0.04 0.48 6.32 -67.92 -0.43 0.05 16 15 H 0.11 1.20 7.90 -51.93 -0.41 0.79 16 16 C -0.18 -1.73 10.23 -26.94 -0.28 -2.00 16 17 C -0.15 -1.56 3.02 -154.80 -0.47 -2.03 16 18 C -0.10 -0.89 8.10 -26.14 -0.21 -1.10 16 19 C -0.14 -1.19 8.08 -25.81 -0.21 -1.39 16 20 C -0.09 -0.89 8.08 -26.14 -0.21 -1.10 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.34 4.21 8.52 -39.29 -0.33 3.88 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -30.24 313.12 -9.99 -40.23 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.05 Total: -1.09 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -2.66 Total: -24.79 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.01 Total: -36.07 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.24 -9.99 -40.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721295412.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.015 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds