Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99786 * 2 1 4 4 H 1.48501 * 109.46756 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46933 * 299.99845 * 3 2 1 6 6 H 1.48498 * 109.47326 * 60.00285 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99673 * 179.97438 * 13 12 11 15 15 H 1.08992 * 115.55973 * 350.65638 * 14 13 12 16 16 C 1.53129 * 117.50943 * 136.39511 * 14 13 12 17 17 C 1.52457 * 59.85625 * 107.44609 * 16 14 13 18 18 C 1.53253 * 128.58160 * 117.60000 * 17 16 14 19 19 C 1.53892 * 86.88668 * 114.94183 * 18 17 16 20 20 C 1.53253 * 128.58690 * 242.39230 * 17 16 14 21 21 H 0.97007 * 119.99867 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47722 * 59.99169 * 9 7 2 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08996 * 109.47452 * 59.99830 * 10 9 7 25 25 H 1.09001 * 109.46997 * 299.99404 * 10 9 7 26 26 H 1.09001 * 109.47502 * 60.00153 * 11 10 9 27 27 H 1.09001 * 109.47289 * 299.99950 * 11 10 9 28 28 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 29 29 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 30 30 H 1.00895 * 111.00438 * 303.95603 * 13 12 11 31 31 H 1.09004 * 117.51183 * 214.90000 * 16 14 13 32 32 H 1.09000 * 117.51187 * 359.97438 * 16 14 13 33 33 H 1.09000 * 113.64969 * 229.43970 * 18 17 16 34 34 H 1.08998 * 113.65014 * 0.44262 * 18 17 16 35 35 H 1.08992 * 113.58946 * 270.39565 * 19 18 17 36 36 H 1.09001 * 113.66357 * 139.57961 * 19 18 17 37 37 H 1.09001 * 113.64709 * 359.55958 * 20 17 16 38 38 H 1.09005 * 113.65012 * 130.55976 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 2.4745 -6.1500 0.0005 13 7 1.7400 -7.4221 0.0018 14 6 2.6645 -8.5638 0.0006 15 1 3.7142 -8.3186 -0.1606 16 6 2.3467 -9.7322 0.9379 17 6 2.1533 -9.8833 -0.5668 18 6 2.8571 -10.8465 -1.5289 19 6 1.4815 -11.5010 -1.7468 20 6 0.8591 -10.1531 -1.3418 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5566 0.8904 24 1 2.8719 -3.6043 0.8905 25 1 2.8718 -3.6043 -0.8895 26 1 0.8533 -5.0451 -0.8886 27 1 0.8539 -5.0445 0.8914 28 1 3.1005 -6.0923 -0.8900 29 1 3.1018 -6.0922 0.8900 30 1 1.1044 -7.4720 0.7838 31 1 3.1876 -10.2560 1.3927 32 1 1.4520 -9.6534 1.5555 33 1 3.2563 -10.3611 -2.4194 34 1 3.5802 -11.5006 -1.0416 35 1 1.2668 -12.3084 -1.0468 36 1 1.2876 -11.7771 -2.7833 37 1 -0.0198 -10.2513 -0.7046 38 1 0.7019 -9.4746 -2.1803 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721295412.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = 3.676767 kcal Electronic energy + Delta-G solvation = -14536.144652 eV Core-core repulsion = 12185.190934 eV Total energy + Delta-G solvation = -2350.953719 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42781 -37.59264 -35.92837 -34.43702 -32.55918 -29.43743 -26.55688 -26.05534 -23.87164 -23.01020 -22.45647 -21.57283 -19.08464 -18.43066 -16.87605 -16.59298 -16.37797 -16.26044 -16.04856 -15.27430 -14.55143 -14.27832 -13.81423 -13.48274 -13.23490 -13.19105 -12.93105 -12.83336 -12.41219 -12.35322 -12.28129 -12.14605 -12.12083 -11.45019 -11.32306 -11.14057 -11.11696 -11.02472 -10.59137 -10.56355 -9.06741 -8.20380 -6.31953 1.39395 1.39989 1.53554 2.40643 2.78402 3.03690 3.12330 3.72345 3.79774 3.94794 3.99347 4.06659 4.15309 4.27722 4.46648 4.56738 4.61051 4.69575 4.82625 4.85987 4.87956 4.91466 4.94195 5.01545 5.10420 5.18756 5.23267 5.28014 5.34923 5.48836 5.54662 5.57069 5.77273 5.86445 6.13187 6.25379 6.42269 6.85832 7.37478 8.91767 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.072249 B = 0.003507 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.457622 B = 7983.072908 C = 8083.009499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.075 3.925 13 N -0.664 5.664 14 C 0.024 3.976 15 H 0.107 0.893 16 C -0.164 4.164 17 C -0.157 4.157 18 C -0.098 4.098 19 C -0.132 4.132 20 C -0.095 4.095 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.010 1.010 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.344 0.656 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 -22.076 -0.293 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.054 4.054 13 N -0.294 5.294 14 C -0.087 4.087 15 H 0.125 0.875 16 C -0.202 4.202 17 C -0.159 4.159 18 C -0.135 4.135 19 C -0.169 4.169 20 C -0.133 4.133 21 H 0.072 0.928 22 H 0.007 0.993 23 H 0.008 0.992 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.163 0.837 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.396 -21.955 -0.976 22.630 hybrid contribution 0.250 1.210 0.918 1.539 sum 5.646 -20.745 -0.058 21.500 Atomic orbital electron populations 1.70118 1.07867 1.27717 1.51818 1.26038 0.95819 1.03533 0.94736 0.85366 0.79063 0.78582 0.77834 1.18511 1.20315 1.20258 1.21776 0.93583 0.92518 1.50354 0.92176 1.19028 0.94519 0.93320 0.94615 1.21393 0.97983 0.93605 1.00499 1.21463 0.98048 0.93388 1.01442 1.21872 0.95257 0.87764 1.00534 1.60125 1.19039 1.00745 1.49442 1.22403 0.95727 0.85947 1.04600 0.87492 1.23391 1.03625 1.01982 0.91215 1.22666 0.99677 0.98397 0.95126 1.22468 0.96824 0.96340 0.97903 1.22755 0.95905 0.96341 1.01918 1.22299 0.95079 0.97017 0.98894 0.92764 0.99306 0.99171 0.93007 0.93094 0.92780 0.92779 0.91224 0.94616 0.83695 0.87348 0.88352 0.89989 0.90650 0.89553 0.90744 0.92095 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -4.07 5.15 30.59 0.16 -3.92 16 11 C -0.11 -3.67 5.47 30.60 0.17 -3.50 16 12 C 0.07 2.09 5.54 86.31 0.48 2.57 16 13 N -0.66 -16.73 6.76 -492.28 -3.33 -20.05 16 14 C 0.02 0.51 6.32 44.78 0.28 0.79 16 15 H 0.11 2.25 7.90 -2.39 -0.02 2.23 16 16 C -0.16 -2.84 10.23 30.46 0.31 -2.53 16 17 C -0.16 -3.00 3.02 -52.37 -0.16 -3.15 16 18 C -0.10 -1.56 8.10 30.98 0.25 -1.31 16 19 C -0.13 -1.97 8.08 31.19 0.25 -1.72 16 20 C -0.10 -1.83 8.08 30.98 0.25 -1.58 16 21 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 22 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 23 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 24 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.34 8.18 8.52 -89.70 -0.76 7.42 16 31 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.10 1.66 8.09 -2.39 -0.02 1.65 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -64.52 313.12 2.05 -62.47 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.23 Total: 12.94 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 2.84 Total: -44.45 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -3.04 Total: -78.04 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.52 2.05 -62.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721295412.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.142 kcal (2) G-P(sol) polarization free energy of solvation -64.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds