Wall clock time and date at job start Mon Mar 30 2020 03:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48503 * 109.46600 * 269.99620 * 3 2 1 5 5 H 1.48501 * 109.46933 * 29.99517 * 3 2 1 6 6 H 1.48498 * 109.47388 * 149.99717 * 3 2 1 7 7 C 1.37874 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00481 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99581 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46762 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46829 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00088 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.84415 * 34.47862 * 12 11 10 14 14 C 1.53478 * 109.84658 * 273.54930 * 12 11 10 15 15 C 1.53509 * 107.21780 * 241.48869 * 14 12 11 16 16 C 1.54105 * 106.40304 * 342.13802 * 15 14 12 17 17 H 1.08996 * 112.07751 * 265.54178 * 16 15 14 18 18 C 1.54054 * 108.34775 * 140.25273 * 16 15 14 19 19 C 1.54215 * 106.82500 * 249.30466 * 18 16 15 20 20 C 1.54952 * 104.24853 * 22.89722 * 19 18 16 21 21 C 1.53164 * 109.94991 * 155.47951 * 12 11 10 22 22 H 1.08998 * 111.71627 * 258.68055 * 21 12 11 23 23 H 0.96997 * 120.00335 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47255 * 60.00170 * 9 7 2 25 25 H 1.08999 * 109.46841 * 300.00198 * 9 7 2 26 26 H 1.08998 * 109.47117 * 60.00060 * 10 9 7 27 27 H 1.08991 * 109.47346 * 299.99933 * 10 9 7 28 28 H 1.00896 * 111.00316 * 56.04816 * 11 10 9 29 29 H 1.09002 * 109.89526 * 122.09282 * 14 12 11 30 30 H 1.08997 * 110.03045 * 0.96194 * 14 12 11 31 31 H 1.09002 * 110.07900 * 101.39109 * 15 14 12 32 32 H 1.09004 * 110.08143 * 222.88896 * 15 14 12 33 33 H 1.08995 * 109.96704 * 129.96367 * 18 16 15 34 34 H 1.09005 * 110.01918 * 8.67269 * 18 16 15 35 35 H 1.09002 * 110.47771 * 264.21193 * 19 18 16 36 36 H 1.08993 * 110.59092 * 141.64361 * 19 18 16 37 37 H 1.08997 * 110.78965 * 203.56226 * 20 19 18 38 38 H 1.09004 * 110.94989 * 80.17853 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4906 -2.6364 0.0009 12 6 6.0171 -4.0078 0.0002 13 1 5.3607 -4.6559 -0.5805 14 6 6.1205 -4.5270 1.4408 15 6 7.6013 -4.8291 1.7098 16 6 8.2830 -4.9264 0.3311 17 1 8.3366 -5.9542 -0.0278 18 6 9.6640 -4.2501 0.4242 19 6 9.5863 -2.9591 -0.4159 20 6 8.0735 -2.6280 -0.4672 21 6 7.4272 -4.0259 -0.5974 22 1 7.4232 -4.3744 -1.6301 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1501 -0.8892 27 1 3.6580 -3.1505 0.8906 28 1 5.8522 -2.1104 0.7823 29 1 5.5306 -5.4371 1.5503 30 1 5.7643 -3.7683 2.1376 31 1 8.0479 -4.0231 2.2920 32 1 7.6996 -5.7745 2.2433 33 1 10.4304 -4.9117 0.0208 34 1 9.8910 -4.0063 1.4621 35 1 9.9726 -3.1338 -1.4201 36 1 10.1369 -2.1528 0.0686 37 1 7.8415 -2.0121 -1.3361 38 1 7.7507 -2.1365 0.4507 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722095888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:24 Heat of formation + Delta-G solvation = -26.495026 kcal Electronic energy + Delta-G solvation = -15619.878189 eV Core-core repulsion = 13267.616123 eV Total energy + Delta-G solvation = -2352.262066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94611 -35.73449 -33.36009 -32.32961 -30.49041 -28.30080 -27.16272 -25.08344 -23.58904 -20.74001 -20.28646 -19.91865 -18.69629 -16.77955 -16.48471 -15.33838 -14.69829 -14.16716 -14.07409 -13.86712 -13.47160 -12.92606 -12.84656 -12.45505 -11.97456 -11.72526 -11.32405 -11.15471 -11.06572 -10.96886 -10.78965 -10.55262 -10.44853 -10.26827 -10.17128 -10.07275 -9.76738 -9.60483 -9.19666 -8.51429 -7.81271 -6.02274 -4.00345 3.34446 3.41043 3.46032 4.35947 4.48224 4.50204 4.63152 4.94016 5.16788 5.20698 5.24350 5.32486 5.42331 5.54031 5.61861 5.63803 5.72474 5.81671 5.90643 5.93293 5.99439 6.00971 6.12076 6.18922 6.28020 6.33529 6.40446 6.40762 6.48395 6.57611 6.82755 7.20319 7.43212 7.68361 7.81765 7.97476 8.56009 9.02122 9.60398 11.11199 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.044951 B = 0.005801 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.745254 B = 4825.513771 C = 5193.464987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.072 3.928 11 N -0.685 5.685 12 C 0.089 3.911 13 H 0.074 0.926 14 C -0.152 4.152 15 C -0.113 4.113 16 C -0.095 4.095 17 H 0.077 0.923 18 C -0.117 4.117 19 C -0.130 4.130 20 C -0.097 4.097 21 C -0.080 4.080 22 H 0.076 0.924 23 H 0.263 0.737 24 H 0.012 0.988 25 H 0.020 0.980 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.335 0.665 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.832 -8.510 1.478 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.056 4.056 11 N -0.316 5.316 12 C -0.022 4.022 13 H 0.092 0.908 14 C -0.192 4.192 15 C -0.151 4.151 16 C -0.114 4.114 17 H 0.095 0.905 18 C -0.155 4.155 19 C -0.167 4.167 20 C -0.135 4.135 21 C -0.099 4.099 22 H 0.095 0.905 23 H 0.072 0.928 24 H 0.030 0.970 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.699 -8.308 0.801 20.477 hybrid contribution 0.030 0.553 0.969 1.117 sum 18.729 -7.754 1.771 20.348 Atomic orbital electron populations 1.69918 1.06329 1.26881 1.51286 1.25010 0.94719 0.99202 0.94515 0.86731 0.80266 0.83431 0.78556 1.20253 1.21542 1.19003 1.21089 0.89476 0.94468 1.50836 0.91174 1.19543 0.96589 0.92026 0.96599 1.21971 0.84500 0.99792 0.99306 1.60779 1.09413 1.11789 1.49572 1.21859 0.95653 0.90634 0.94017 0.90815 1.22735 0.96616 1.01489 0.98331 1.22184 0.95329 1.00956 0.96650 1.22474 0.94674 0.98781 0.95474 0.90502 1.22262 0.96435 0.96696 1.00075 1.22451 0.97842 0.96888 0.99564 1.22216 0.92495 0.96393 1.02429 1.22384 0.93493 0.95619 0.98384 0.90537 0.92763 0.96995 0.96152 0.91930 0.96131 0.84618 0.92073 0.91724 0.91834 0.92397 0.92581 0.91953 0.92103 0.92202 0.91192 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.48 5.44 -3.82 -0.02 1.46 16 11 N -0.69 -11.48 5.09 -106.38 -0.54 -12.02 16 12 C 0.09 1.25 3.06 -67.38 -0.21 1.05 16 13 H 0.07 1.09 7.81 -51.93 -0.41 0.68 16 14 C -0.15 -1.93 6.32 -26.22 -0.17 -2.10 16 15 C -0.11 -1.22 6.10 -25.89 -0.16 -1.37 16 16 C -0.10 -0.99 3.91 -88.39 -0.35 -1.34 16 17 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.12 -1.12 6.34 -25.55 -0.16 -1.28 16 19 C -0.13 -1.32 6.82 -25.07 -0.17 -1.49 16 20 C -0.10 -1.19 5.31 -24.88 -0.13 -1.32 16 21 C -0.08 -0.97 3.62 -88.61 -0.32 -1.29 16 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.06 1.31 8.06 -51.93 -0.42 0.90 16 27 H 0.02 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.34 5.43 6.90 -39.29 -0.27 5.16 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.88 7.58 -51.93 -0.39 0.49 16 31 H 0.06 0.68 7.28 -51.93 -0.38 0.30 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 7.19 -51.93 -0.37 0.20 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.87 6.61 -51.93 -0.34 0.52 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -29.95 289.34 -9.05 -39.00 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.74 Total: 0.30 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.23 Total: -21.61 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.23 Total: -39.56 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.95 -9.05 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722095888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.506 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds