Wall clock time and date at job start Mon Mar 30 2020 03:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48503 * 109.46600 * 269.99620 * 3 2 1 5 5 H 1.48501 * 109.46933 * 29.99517 * 3 2 1 6 6 H 1.48498 * 109.47388 * 149.99717 * 3 2 1 7 7 C 1.37874 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00481 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99581 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46762 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.46829 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00088 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.84415 * 34.47862 * 12 11 10 14 14 C 1.53478 * 109.84658 * 273.54930 * 12 11 10 15 15 C 1.53509 * 107.21780 * 241.48869 * 14 12 11 16 16 C 1.54105 * 106.40304 * 342.13802 * 15 14 12 17 17 H 1.08996 * 112.07751 * 265.54178 * 16 15 14 18 18 C 1.54054 * 108.34775 * 140.25273 * 16 15 14 19 19 C 1.54215 * 106.82500 * 249.30466 * 18 16 15 20 20 C 1.54952 * 104.24853 * 22.89722 * 19 18 16 21 21 C 1.53164 * 109.94991 * 155.47951 * 12 11 10 22 22 H 1.08998 * 111.71627 * 258.68055 * 21 12 11 23 23 H 0.96997 * 120.00335 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47255 * 60.00170 * 9 7 2 25 25 H 1.08999 * 109.46841 * 300.00198 * 9 7 2 26 26 H 1.08998 * 109.47117 * 60.00060 * 10 9 7 27 27 H 1.08991 * 109.47346 * 299.99933 * 10 9 7 28 28 H 1.00896 * 111.00316 * 56.04816 * 11 10 9 29 29 H 1.09002 * 109.89526 * 122.09282 * 14 12 11 30 30 H 1.08997 * 110.03045 * 0.96194 * 14 12 11 31 31 H 1.09002 * 110.07900 * 101.39109 * 15 14 12 32 32 H 1.09004 * 110.08143 * 222.88896 * 15 14 12 33 33 H 1.08995 * 109.96704 * 129.96367 * 18 16 15 34 34 H 1.09005 * 110.01918 * 8.67269 * 18 16 15 35 35 H 1.09002 * 110.47771 * 264.21193 * 19 18 16 36 36 H 1.08993 * 110.59092 * 141.64361 * 19 18 16 37 37 H 1.08997 * 110.78965 * 203.56226 * 20 19 18 38 38 H 1.09004 * 110.94989 * 80.17853 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4906 -2.6364 0.0009 12 6 6.0171 -4.0078 0.0002 13 1 5.3607 -4.6559 -0.5805 14 6 6.1205 -4.5270 1.4408 15 6 7.6013 -4.8291 1.7098 16 6 8.2830 -4.9264 0.3311 17 1 8.3366 -5.9542 -0.0278 18 6 9.6640 -4.2501 0.4242 19 6 9.5863 -2.9591 -0.4159 20 6 8.0735 -2.6280 -0.4672 21 6 7.4272 -4.0259 -0.5974 22 1 7.4232 -4.3744 -1.6301 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6586 -3.1501 -0.8892 27 1 3.6580 -3.1505 0.8906 28 1 5.8522 -2.1104 0.7823 29 1 5.5306 -5.4371 1.5503 30 1 5.7643 -3.7683 2.1376 31 1 8.0479 -4.0231 2.2920 32 1 7.6996 -5.7745 2.2433 33 1 10.4304 -4.9117 0.0208 34 1 9.8910 -4.0063 1.4621 35 1 9.9726 -3.1338 -1.4201 36 1 10.1369 -2.1528 0.0686 37 1 7.8415 -2.0121 -1.3361 38 1 7.7507 -2.1365 0.4507 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722095888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:23 Heat of formation + Delta-G solvation = -44.097240 kcal Electronic energy + Delta-G solvation = -15620.641478 eV Core-core repulsion = 13267.616123 eV Total energy + Delta-G solvation = -2353.025355 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92933 -37.13133 -35.10669 -33.78834 -32.01430 -29.68221 -28.08565 -26.38323 -25.20146 -22.36861 -21.44188 -20.90242 -19.67913 -18.93727 -17.53300 -16.58495 -16.21930 -15.80096 -15.50182 -14.82303 -14.75921 -14.55576 -14.20462 -13.75790 -13.42062 -13.07738 -12.83963 -12.67959 -12.33876 -11.97370 -11.92017 -11.74375 -11.68421 -11.45548 -11.41424 -11.39026 -11.25300 -11.18553 -10.99389 -10.78044 -9.20675 -8.30998 -6.35676 1.36664 1.37759 1.50620 2.35940 3.04644 3.24094 3.56256 3.69696 3.89856 4.23498 4.25146 4.37475 4.41882 4.50255 4.56484 4.67955 4.69574 4.75193 4.83378 4.94365 4.97076 5.01067 5.04274 5.12122 5.17523 5.21597 5.27686 5.38642 5.41926 5.49395 5.50720 5.60390 5.63437 5.64710 6.21182 6.28060 6.57299 6.73534 7.29376 8.85878 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.044951 B = 0.005801 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.745254 B = 4825.513771 C = 5193.464987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.003 4.003 10 C 0.087 3.913 11 N -0.681 5.681 12 C 0.085 3.915 13 H 0.062 0.938 14 C -0.151 4.151 15 C -0.108 4.108 16 C -0.090 4.090 17 H 0.087 0.913 18 C -0.113 4.113 19 C -0.125 4.125 20 C -0.099 4.099 21 C -0.080 4.080 22 H 0.076 0.924 23 H 0.267 0.733 24 H 0.018 0.982 25 H 0.021 0.979 26 H 0.051 0.949 27 H 0.013 0.987 28 H 0.340 0.660 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.648 -8.254 1.838 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.041 4.041 10 C -0.042 4.042 11 N -0.312 5.312 12 C -0.025 4.025 13 H 0.080 0.920 14 C -0.190 4.190 15 C -0.146 4.146 16 C -0.108 4.108 17 H 0.106 0.894 18 C -0.151 4.151 19 C -0.163 4.163 20 C -0.137 4.137 21 C -0.099 4.099 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.037 0.963 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.160 0.840 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 21.538 -8.075 1.163 23.031 hybrid contribution -0.921 0.390 0.840 1.306 sum 20.617 -7.685 2.003 22.094 Atomic orbital electron populations 1.70067 1.08325 1.28255 1.52560 1.26008 0.95620 1.03572 0.93924 0.85586 0.79394 0.77985 0.79202 1.19263 1.20853 1.17039 1.21422 0.92023 0.93160 1.50710 0.95172 1.19424 0.93461 0.94547 0.96633 1.21623 0.86962 0.97107 0.98477 1.60716 1.06736 1.13828 1.49939 1.21960 0.96563 0.88792 0.95175 0.91954 1.22679 0.98410 1.01066 0.96856 1.22170 0.93515 1.01823 0.97084 1.22472 0.94805 0.99025 0.94542 0.89419 1.22245 0.96039 0.96369 1.00437 1.22423 0.96089 0.97553 1.00229 1.22180 0.94293 0.95947 1.01297 1.22383 0.92375 0.96410 0.98708 0.90606 0.92413 0.96346 0.96096 0.93061 0.96845 0.84021 0.91980 0.92839 0.91512 0.90957 0.91147 0.91322 0.91562 0.91484 0.92676 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 2 C 0.01 0.33 5.47 84.65 0.46 0.80 16 3 Si 0.96 45.36 27.47 68.60 1.88 47.25 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 7 C -0.53 -31.79 9.66 25.60 0.25 -31.54 16 8 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 9 C 0.00 -0.14 4.30 29.85 0.13 -0.01 16 10 C 0.09 3.60 5.44 86.30 0.47 4.07 16 11 N -0.68 -22.40 5.09 -490.46 -2.50 -24.90 16 12 C 0.09 2.33 3.06 45.13 0.14 2.46 16 13 H 0.06 1.83 7.81 -2.39 -0.02 1.82 16 14 C -0.15 -3.64 6.32 30.93 0.20 -3.44 16 15 C -0.11 -2.04 6.10 31.14 0.19 -1.85 16 16 C -0.09 -1.62 3.91 -9.35 -0.04 -1.66 16 17 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 18 C -0.11 -1.78 6.34 31.36 0.20 -1.58 16 19 C -0.13 -2.20 6.82 31.67 0.22 -1.99 16 20 C -0.10 -2.25 5.31 31.79 0.17 -2.08 16 21 C -0.08 -1.81 3.62 -9.49 -0.03 -1.84 16 22 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 25 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 26 H 0.05 2.20 8.06 -2.39 -0.02 2.19 16 27 H 0.01 0.56 8.09 -2.39 -0.02 0.54 16 28 H 0.34 10.66 6.90 -89.70 -0.62 10.04 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.41 7.58 -2.39 -0.02 1.39 16 31 H 0.07 1.23 7.28 -2.39 -0.02 1.22 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.02 7.19 -2.38 -0.02 1.00 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.43 6.61 -2.39 -0.02 1.41 16 Total: -1.00 -64.69 289.34 2.37 -62.32 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.34 Total: 14.48 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 2.34 Total: -38.66 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -2.20 Total: -85.39 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -64.69 2.37 -62.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722095888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.227 kcal (2) G-P(sol) polarization free energy of solvation -64.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds