Wall clock time and date at job start Mon Mar 30 2020 02:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99783 * 2 1 4 4 H 1.48509 * 109.46946 * 269.99577 * 3 2 1 5 5 H 1.48500 * 109.47296 * 29.99377 * 3 2 1 6 6 H 1.48499 * 109.47398 * 149.99563 * 3 2 1 7 7 C 1.37868 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00197 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00340 * 185.21490 * 10 9 7 12 12 H 1.09005 * 109.47091 * 325.68828 * 11 10 9 13 13 C 1.53004 * 109.47141 * 85.68646 * 11 10 9 14 14 C 1.53007 * 117.49760 * 252.93139 * 13 11 10 15 15 C 1.53002 * 117.49929 * 184.27371 * 13 11 10 16 16 C 1.52998 * 109.47317 * 205.68595 * 11 10 9 17 17 C 1.54888 * 110.48510 * 308.24349 * 16 11 10 18 18 C 1.55236 * 102.58684 * 156.67585 * 17 16 11 19 19 C 1.54268 * 104.23384 * 322.08361 * 18 17 16 20 20 C 1.53880 * 106.59737 * 23.60755 * 19 18 17 21 21 H 0.96998 * 120.00252 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.47187 * 60.00233 * 9 7 2 23 23 H 1.08994 * 109.47386 * 300.00337 * 9 7 2 24 24 H 1.00902 * 110.99785 * 61.25468 * 10 9 7 25 25 H 1.09003 * 115.55081 * 38.59796 * 13 11 10 26 26 H 1.08996 * 117.49665 * 0.02562 * 14 13 11 27 27 H 1.08992 * 117.49429 * 145.02143 * 14 13 11 28 28 H 1.08999 * 117.49429 * 214.98022 * 15 13 11 29 29 H 1.09002 * 117.49839 * 359.97261 * 15 13 11 30 30 H 1.09002 * 110.43506 * 185.69773 * 16 11 10 31 31 H 1.08998 * 110.75797 * 275.06243 * 17 16 11 32 32 H 1.09000 * 110.76109 * 38.43767 * 17 16 11 33 33 H 1.09004 * 110.46999 * 203.39273 * 18 17 16 34 34 H 1.09003 * 110.58710 * 80.82643 * 18 17 16 35 35 H 1.09006 * 110.02985 * 264.33006 * 19 18 17 36 36 H 1.08991 * 110.07499 * 142.91645 * 19 18 17 37 37 H 1.08994 * 110.03788 * 240.72037 * 20 19 18 38 38 H 1.09003 * 110.06996 * 119.30889 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4644 -2.6200 0.1262 12 1 5.8975 -1.7643 -0.3919 13 6 5.8512 -2.5697 1.6057 14 6 6.4561 -1.2673 2.1339 15 6 7.3418 -2.5014 1.9442 16 6 5.9934 -3.9139 -0.4956 17 6 5.2409 -5.1392 0.0803 18 6 5.4353 -6.2076 -1.0290 19 6 5.3299 -5.4108 -2.3457 20 6 5.6846 -3.9524 -2.0066 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6799 0.8912 23 1 3.8752 -0.6802 -0.8887 24 1 3.6951 -3.0706 -0.8252 25 1 5.2075 -3.1352 2.2794 26 1 6.5780 -0.4463 1.4275 27 1 6.2107 -0.9764 3.1551 28 1 7.6785 -3.0217 2.8408 29 1 8.0468 -2.4926 1.1129 30 1 7.0654 -4.0087 -0.3228 31 1 5.6930 -5.4648 1.0172 32 1 4.1835 -4.9134 0.2183 33 1 4.6492 -6.9608 -0.9748 34 1 6.4165 -6.6748 -0.9434 35 1 4.3135 -5.4668 -2.7356 36 1 6.0331 -5.8053 -3.0790 37 1 4.8405 -3.3006 -2.2319 38 1 6.5603 -3.6386 -2.5747 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723869400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:35 Heat of formation + Delta-G solvation = 6.427149 kcal Electronic energy + Delta-G solvation = -15870.126841 eV Core-core repulsion = 13519.292388 eV Total energy + Delta-G solvation = -2350.834453 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.11191 -36.50503 -34.34297 -32.25403 -29.68600 -28.45569 -26.59207 -24.18790 -22.11049 -21.22640 -20.90922 -19.84767 -18.61376 -16.73956 -16.01991 -15.32570 -15.09310 -14.37717 -14.12208 -13.59258 -13.25622 -13.01444 -12.64792 -12.23711 -11.83678 -11.68861 -11.31288 -11.05822 -10.87879 -10.81432 -10.74138 -10.52467 -10.32988 -10.27303 -10.16666 -10.04250 -9.69065 -9.39382 -9.17821 -8.56127 -7.40817 -6.02361 -3.99242 3.29885 3.37573 3.41045 4.12736 4.44996 4.66681 4.82730 4.95501 5.02310 5.21588 5.27813 5.30871 5.47398 5.62596 5.66548 5.74121 5.80447 5.82788 5.85479 5.93923 5.99047 6.07218 6.12072 6.20456 6.27214 6.31705 6.37511 6.50870 6.53330 6.68303 6.79940 6.90344 7.06696 7.69594 7.97220 8.42107 8.70768 9.06819 9.60495 11.11122 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.008536 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.984701 B = 3279.280306 C = 3987.850550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.079 0.921 9 C 0.165 3.835 10 N -0.670 5.670 11 C 0.120 3.880 12 H 0.033 0.967 13 C -0.119 4.119 14 C -0.184 4.184 15 C -0.188 4.188 16 C -0.088 4.088 17 C -0.114 4.114 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.128 4.128 21 H 0.263 0.737 22 H 0.029 0.971 23 H -0.025 1.025 24 H 0.336 0.664 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.386 -8.057 -0.816 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.549 4.549 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.303 5.303 11 C 0.009 3.991 12 H 0.051 0.949 13 C -0.138 4.138 14 C -0.221 4.221 15 C -0.225 4.225 16 C -0.107 4.107 17 C -0.151 4.151 18 C -0.164 4.164 19 C -0.160 4.160 20 C -0.165 4.165 21 H 0.073 0.927 22 H 0.047 0.953 23 H -0.007 1.007 24 H 0.156 0.844 25 H 0.127 0.873 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.103 -8.017 -0.160 16.223 hybrid contribution 0.668 1.403 -0.882 1.787 sum 14.771 -6.614 -1.042 16.218 Atomic orbital electron populations 1.69900 1.06128 1.26750 1.51366 1.24896 0.94715 0.98856 0.94911 0.86857 0.80447 0.84045 0.78369 1.20481 1.21226 1.19097 1.21076 0.89077 0.94681 1.50053 0.90329 1.20034 0.96463 0.85128 0.94649 1.60454 1.06499 1.17852 1.45475 1.20964 0.90491 0.95206 0.92411 0.94944 1.22274 0.93894 1.00102 0.97549 1.22955 1.04840 0.92119 1.02146 1.22910 0.94154 1.02791 1.02655 1.22120 0.99436 0.95199 0.93971 1.22568 1.02352 0.93375 0.96827 1.22431 1.00790 0.97922 0.95226 1.22094 1.01320 0.95113 0.97433 1.22274 1.01250 0.96973 0.96049 0.92750 0.95314 1.00740 0.84420 0.87296 0.89412 0.89229 0.89348 0.89470 0.91086 0.92124 0.89266 0.92034 0.92441 0.91759 0.92553 0.91384 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.73 9.91 -34.44 -0.34 -15.07 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 9 C 0.17 4.04 4.28 -4.97 -0.02 4.02 16 10 N -0.67 -13.67 5.19 -107.99 -0.56 -14.23 16 11 C 0.12 2.01 1.93 -67.72 -0.13 1.88 16 12 H 0.03 0.58 7.64 -51.93 -0.40 0.19 16 13 C -0.12 -1.90 4.77 -90.61 -0.43 -2.33 16 14 C -0.18 -2.80 10.18 -26.69 -0.27 -3.07 16 15 C -0.19 -2.44 9.74 -26.69 -0.26 -2.70 16 16 C -0.09 -1.22 2.59 -88.96 -0.23 -1.45 16 17 C -0.11 -1.53 5.83 -24.55 -0.14 -1.67 16 18 C -0.13 -1.47 6.84 -24.88 -0.17 -1.64 16 19 C -0.12 -1.45 6.80 -25.61 -0.17 -1.63 16 20 C -0.13 -1.70 6.03 -25.61 -0.15 -1.86 16 21 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 22 H 0.03 0.73 7.02 -51.92 -0.36 0.36 16 23 H -0.02 -0.62 7.57 -51.93 -0.39 -1.01 16 24 H 0.34 6.68 6.14 -39.29 -0.24 6.44 16 25 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 26 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.06 7.89 -51.93 -0.41 0.65 16 30 H 0.07 0.91 7.49 -51.93 -0.39 0.52 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.40 6.79 -51.93 -0.35 1.05 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.03 6.36 -51.93 -0.33 0.70 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 296.35 15.07 4.47 4.47 Total: -1.00 -29.82 296.35 -9.11 -38.93 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.69 Total: 4.44 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.43 Total: -23.63 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.21 Total: -41.49 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.82 -9.11 -38.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723869400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.353 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds