Wall clock time and date at job start Mon Mar 30 2020 02:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99783 * 2 1 4 4 H 1.48509 * 109.46946 * 269.99577 * 3 2 1 5 5 H 1.48500 * 109.47296 * 29.99377 * 3 2 1 6 6 H 1.48499 * 109.47398 * 149.99563 * 3 2 1 7 7 C 1.37868 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00122 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00197 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00340 * 185.21490 * 10 9 7 12 12 H 1.09005 * 109.47091 * 325.68828 * 11 10 9 13 13 C 1.53004 * 109.47141 * 85.68646 * 11 10 9 14 14 C 1.53007 * 117.49760 * 252.93139 * 13 11 10 15 15 C 1.53002 * 117.49929 * 184.27371 * 13 11 10 16 16 C 1.52998 * 109.47317 * 205.68595 * 11 10 9 17 17 C 1.54888 * 110.48510 * 308.24349 * 16 11 10 18 18 C 1.55236 * 102.58684 * 156.67585 * 17 16 11 19 19 C 1.54268 * 104.23384 * 322.08361 * 18 17 16 20 20 C 1.53880 * 106.59737 * 23.60755 * 19 18 17 21 21 H 0.96998 * 120.00252 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.47187 * 60.00233 * 9 7 2 23 23 H 1.08994 * 109.47386 * 300.00337 * 9 7 2 24 24 H 1.00902 * 110.99785 * 61.25468 * 10 9 7 25 25 H 1.09003 * 115.55081 * 38.59796 * 13 11 10 26 26 H 1.08996 * 117.49665 * 0.02562 * 14 13 11 27 27 H 1.08992 * 117.49429 * 145.02143 * 14 13 11 28 28 H 1.08999 * 117.49429 * 214.98022 * 15 13 11 29 29 H 1.09002 * 117.49839 * 359.97261 * 15 13 11 30 30 H 1.09002 * 110.43506 * 185.69773 * 16 11 10 31 31 H 1.08998 * 110.75797 * 275.06243 * 17 16 11 32 32 H 1.09000 * 110.76109 * 38.43767 * 17 16 11 33 33 H 1.09004 * 110.46999 * 203.39273 * 18 17 16 34 34 H 1.09003 * 110.58710 * 80.82643 * 18 17 16 35 35 H 1.09006 * 110.02985 * 264.33006 * 19 18 17 36 36 H 1.08991 * 110.07499 * 142.91645 * 19 18 17 37 37 H 1.08994 * 110.03788 * 240.72037 * 20 19 18 38 38 H 1.09003 * 110.06996 * 119.30889 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4644 -2.6200 0.1262 12 1 5.8975 -1.7643 -0.3919 13 6 5.8512 -2.5697 1.6057 14 6 6.4561 -1.2673 2.1339 15 6 7.3418 -2.5014 1.9442 16 6 5.9934 -3.9139 -0.4956 17 6 5.2409 -5.1392 0.0803 18 6 5.4353 -6.2076 -1.0290 19 6 5.3299 -5.4108 -2.3457 20 6 5.6846 -3.9524 -2.0066 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6799 0.8912 23 1 3.8752 -0.6802 -0.8887 24 1 3.6951 -3.0706 -0.8252 25 1 5.2075 -3.1352 2.2794 26 1 6.5780 -0.4463 1.4275 27 1 6.2107 -0.9764 3.1551 28 1 7.6785 -3.0217 2.8408 29 1 8.0468 -2.4926 1.1129 30 1 7.0654 -4.0087 -0.3228 31 1 5.6930 -5.4648 1.0172 32 1 4.1835 -4.9134 0.2183 33 1 4.6492 -6.9608 -0.9748 34 1 6.4165 -6.6748 -0.9434 35 1 4.3135 -5.4668 -2.7356 36 1 6.0331 -5.8053 -3.0790 37 1 4.8405 -3.3006 -2.2319 38 1 6.5603 -3.6386 -2.5747 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723869400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:35 Heat of formation + Delta-G solvation = -11.044067 kcal Electronic energy + Delta-G solvation = -15870.884450 eV Core-core repulsion = 13519.292388 eV Total energy + Delta-G solvation = -2351.592062 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32735 -37.60898 -36.06652 -34.30549 -31.18070 -29.48756 -28.35150 -25.54472 -23.29194 -23.16361 -22.03085 -20.87566 -19.91716 -18.84343 -17.33403 -16.74038 -16.33742 -16.08161 -15.39996 -15.19303 -14.62373 -14.43493 -14.13879 -13.93953 -13.49459 -13.06497 -12.67890 -12.43298 -12.36251 -12.04822 -11.92522 -11.87094 -11.77777 -11.64847 -11.39705 -11.32303 -11.20095 -11.04675 -10.82190 -10.58573 -9.08003 -8.30800 -6.34020 1.30782 1.33249 1.44710 2.32142 2.95850 3.03226 3.39910 3.73804 3.85268 3.93025 4.06253 4.15159 4.26332 4.42971 4.59896 4.64272 4.67585 4.73231 4.79216 4.83116 4.88444 4.90890 4.99953 5.05545 5.10104 5.15552 5.18597 5.28374 5.32533 5.42429 5.44873 5.52665 5.56142 5.69363 6.01691 6.62245 6.69838 6.80558 7.30941 8.86128 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.008536 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.984701 B = 3279.280306 C = 3987.850550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.522 4.522 8 H 0.037 0.963 9 C 0.180 3.820 10 N -0.676 5.676 11 C 0.121 3.879 12 H 0.024 0.976 13 C -0.142 4.142 14 C -0.199 4.199 15 C -0.151 4.151 16 C -0.081 4.081 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.129 4.129 21 H 0.267 0.733 22 H 0.024 0.976 23 H -0.024 1.024 24 H 0.336 0.664 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.372 -8.139 -0.902 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.560 4.560 8 H 0.055 0.945 9 C 0.051 3.949 10 N -0.308 5.308 11 C 0.011 3.989 12 H 0.042 0.958 13 C -0.161 4.161 14 C -0.237 4.237 15 C -0.188 4.188 16 C -0.100 4.100 17 C -0.151 4.151 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.167 4.167 21 H 0.076 0.924 22 H 0.042 0.958 23 H -0.007 1.007 24 H 0.156 0.844 25 H 0.112 0.888 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.106 -8.121 -0.246 18.937 hybrid contribution -0.316 1.343 -0.842 1.616 sum 16.790 -6.778 -1.088 18.139 Atomic orbital electron populations 1.70050 1.08063 1.28096 1.52623 1.25840 0.95608 1.03117 0.94342 0.85714 0.79405 0.78727 0.79091 1.19241 1.20491 1.17614 1.21347 0.91490 0.93285 1.49904 0.94509 1.19714 0.93501 0.87469 0.94170 1.60369 1.09471 1.15369 1.45624 1.21040 0.87767 0.96595 0.93471 0.95796 1.22186 0.96329 1.01083 0.96489 1.23022 1.06277 0.92280 1.02078 1.22992 0.92081 1.00042 1.03683 1.22103 1.00405 0.93519 0.93959 1.22504 1.00464 0.94092 0.98066 1.22410 1.02037 0.97321 0.93968 1.22097 1.01365 0.94242 0.98139 1.22282 1.00878 0.97540 0.95992 0.92417 0.95778 1.00676 0.84446 0.88817 0.90187 0.88983 0.87263 0.87883 0.88860 0.91276 0.92316 0.91760 0.90417 0.92732 0.90508 0.93945 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.45 13.96 21.44 0.30 -60.16 16 2 C 0.01 0.49 5.47 84.65 0.46 0.95 16 3 Si 0.95 45.41 27.47 68.60 1.88 47.30 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 7 C -0.52 -31.16 9.91 25.60 0.25 -30.91 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 9 C 0.18 8.92 4.28 85.56 0.37 9.29 16 10 N -0.68 -28.15 5.19 -495.57 -2.57 -30.72 16 11 C 0.12 3.97 1.93 44.92 0.09 4.05 16 12 H 0.02 0.83 7.64 -2.38 -0.02 0.82 16 13 C -0.14 -4.33 4.77 -10.79 -0.05 -4.38 16 14 C -0.20 -5.74 10.18 30.62 0.31 -5.42 16 15 C -0.15 -3.42 9.74 30.62 0.30 -3.12 16 16 C -0.08 -2.09 2.59 -9.72 -0.03 -2.12 16 17 C -0.11 -2.91 5.83 32.01 0.19 -2.73 16 18 C -0.12 -2.51 6.84 31.79 0.22 -2.29 16 19 C -0.12 -2.64 6.80 31.32 0.21 -2.43 16 20 C -0.13 -3.25 6.03 31.32 0.19 -3.06 16 21 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 22 H 0.02 1.22 7.02 -2.38 -0.02 1.20 16 23 H -0.02 -1.19 7.57 -2.39 -0.02 -1.21 16 24 H 0.34 13.86 6.14 -89.69 -0.55 13.31 16 25 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 26 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 27 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.10 2.05 7.89 -2.39 -0.02 2.03 16 30 H 0.09 2.04 7.49 -2.39 -0.02 2.02 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.87 6.79 -2.39 -0.02 1.85 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.28 6.36 -2.39 -0.02 1.26 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.63 296.35 2.53 -63.11 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.40 Total: 22.63 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 2.51 Total: -42.16 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -2.27 Total: -90.87 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.30 kcal Total: -65.63 2.53 -63.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723869400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.062 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds