Wall clock time and date at job start Mon Mar 30 2020 02:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99799 * 2 1 4 4 H 1.48498 * 109.46902 * 270.00350 * 3 2 1 5 5 H 1.48498 * 109.47117 * 30.00423 * 3 2 1 6 6 H 1.48501 * 109.46747 * 150.00641 * 3 2 1 7 7 C 1.37874 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00056 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47509 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00010 * 174.72429 * 10 9 7 12 12 H 1.08998 * 109.47455 * 7.99348 * 11 10 9 13 13 C 1.53004 * 109.47263 * 247.99467 * 11 10 9 14 14 C 1.52996 * 117.49679 * 128.98165 * 13 11 10 15 15 C 1.52999 * 117.49807 * 60.35762 * 13 11 10 16 16 C 1.52998 * 109.47046 * 127.99755 * 11 10 9 17 17 C 1.54268 * 110.03288 * 57.16421 * 16 11 10 18 18 C 1.54894 * 104.19498 * 217.11060 * 17 16 11 19 19 C 1.54890 * 102.74845 * 37.93964 * 18 17 16 20 20 C 1.53877 * 110.03057 * 300.00000 * 16 11 10 21 21 H 0.97000 * 120.00020 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.47121 * 59.99567 * 9 7 2 23 23 H 1.09001 * 109.47044 * 300.00415 * 9 7 2 24 24 H 1.00899 * 111.00418 * 298.68349 * 10 9 7 25 25 H 1.09001 * 115.54563 * 274.69070 * 13 11 10 26 26 H 1.08999 * 117.50339 * 0.02562 * 14 13 11 27 27 H 1.09005 * 117.49597 * 145.02210 * 14 13 11 28 28 H 1.09000 * 117.50320 * 214.97824 * 15 13 11 29 29 H 1.08997 * 117.49948 * 359.97438 * 15 13 11 30 30 H 1.08997 * 110.01916 * 178.61204 * 16 11 10 31 31 H 1.09004 * 110.48647 * 335.78147 * 17 16 11 32 32 H 1.09001 * 110.48398 * 98.43280 * 17 16 11 33 33 H 1.09005 * 110.75106 * 279.62672 * 18 17 16 34 34 H 1.08993 * 110.91451 * 156.33636 * 18 17 16 35 35 H 1.09000 * 110.48345 * 203.37865 * 19 18 17 36 36 H 1.08997 * 110.59469 * 80.79960 * 19 18 17 37 37 H 1.08997 * 110.03368 * 238.56877 * 20 16 11 38 38 H 1.09008 * 110.03132 * 359.97438 * 20 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5099 -4.9033 0.1243 12 1 0.4343 -4.7442 0.0476 13 6 1.8373 -5.5293 1.4815 14 6 0.6642 -5.9978 2.3447 15 6 1.4477 -4.7427 2.7346 16 6 1.9676 -5.8419 -0.9939 17 6 3.4991 -6.0199 -0.9407 18 6 3.9257 -6.0857 -2.4282 19 6 2.9904 -5.0487 -3.0983 20 6 1.6443 -5.2245 -2.3657 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.7837 -3.5965 -0.8286 25 1 2.7562 -6.1143 1.5199 26 1 -0.3407 -5.8605 1.9457 27 1 0.8112 -6.8915 2.9513 28 1 2.1099 -4.8106 3.5977 29 1 0.9585 -3.7791 2.5922 30 1 1.4748 -6.8091 -0.8943 31 1 3.9654 -5.1670 -0.4475 32 1 3.7578 -6.9465 -0.4282 33 1 3.7530 -7.0819 -2.8359 34 1 4.9701 -5.7974 -2.5466 35 1 2.8781 -5.2665 -4.1604 36 1 3.3735 -4.0383 -2.9555 37 1 0.9954 -5.8923 -2.9322 38 1 1.1609 -4.2562 -2.2348 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723869401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:37 Heat of formation + Delta-G solvation = -14.794836 kcal Electronic energy + Delta-G solvation = -15952.866318 eV Core-core repulsion = 13601.111611 eV Total energy + Delta-G solvation = -2351.754707 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.44498 -37.62167 -35.91457 -34.14255 -31.01358 -29.54567 -28.09426 -25.55302 -23.61993 -23.10747 -22.01633 -20.96628 -20.02001 -18.41419 -17.39764 -16.58035 -16.35233 -16.15504 -15.44719 -14.99842 -14.59764 -14.33478 -14.08906 -13.71900 -13.27852 -12.99442 -12.70577 -12.58004 -12.31154 -12.05225 -11.97793 -11.87787 -11.78220 -11.67118 -11.45757 -11.37872 -11.14312 -10.91695 -10.73041 -10.62870 -8.97858 -8.21652 -6.32574 1.38719 1.40593 1.52415 2.39042 2.97820 3.10802 3.56081 3.74459 3.79555 3.89338 4.08836 4.22094 4.34958 4.41271 4.57311 4.60927 4.63740 4.77575 4.80051 4.83439 4.93374 4.97856 5.05363 5.08996 5.12280 5.21745 5.28715 5.30648 5.34906 5.42014 5.47609 5.49984 5.62417 5.64869 6.07377 6.54726 6.80002 6.95919 7.38524 8.89358 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.008696 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.077374 B = 3219.207459 C = 4000.988607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.218 3.782 10 N -0.674 5.674 11 C 0.117 3.883 12 H 0.020 0.980 13 C -0.128 4.128 14 C -0.170 4.170 15 C -0.182 4.182 16 C -0.093 4.093 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.125 4.125 20 C -0.129 4.129 21 H 0.264 0.736 22 H -0.048 1.048 23 H -0.006 1.006 24 H 0.335 0.665 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 -14.034 -2.143 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.090 3.910 10 N -0.306 5.306 11 C 0.007 3.993 12 H 0.038 0.962 13 C -0.147 4.147 14 C -0.208 4.208 15 C -0.220 4.220 16 C -0.112 4.112 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.163 4.163 20 C -0.167 4.167 21 H 0.072 0.928 22 H -0.031 1.031 23 H 0.013 0.987 24 H 0.154 0.846 25 H 0.135 0.865 26 H 0.098 0.902 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.786 -13.860 -1.477 15.092 hybrid contribution -0.725 1.319 -0.769 1.690 sum 5.062 -12.542 -2.245 13.710 Atomic orbital electron populations 1.70099 1.07793 1.27824 1.51849 1.25943 0.95754 1.03308 0.94761 0.85372 0.78560 0.78148 0.78469 1.19682 1.20744 1.18874 1.21534 0.93675 0.91483 1.50030 0.92015 1.19195 0.90310 0.89182 0.92300 1.60570 1.23678 1.01186 1.45119 1.21153 0.94759 0.89585 0.93813 0.96177 1.22289 0.99270 1.02275 0.90893 1.23053 0.95721 0.98376 1.03619 1.22678 1.04471 0.95214 0.99589 1.22094 0.97780 0.98540 0.92786 1.22409 0.93515 1.02212 0.97235 1.22467 0.99006 0.99139 0.94637 1.22369 0.94772 0.99325 0.99790 1.22263 0.98468 0.99642 0.96341 0.92758 1.03087 0.98748 0.84605 0.86452 0.90216 0.86361 0.88126 0.92421 0.89417 0.91888 0.90085 0.90105 0.90857 0.90588 0.93202 0.90736 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.53 -31.06 9.36 25.60 0.24 -30.82 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.22 12.08 4.99 85.56 0.43 12.51 16 10 N -0.67 -29.63 5.35 -495.56 -2.65 -32.28 16 11 C 0.12 4.25 1.92 44.92 0.09 4.34 16 12 H 0.02 0.84 7.32 -2.39 -0.02 0.82 16 13 C -0.13 -4.07 5.17 -10.79 -0.06 -4.13 16 14 C -0.17 -4.82 10.18 30.59 0.31 -4.51 16 15 C -0.18 -6.31 10.13 30.60 0.31 -6.00 16 16 C -0.09 -2.64 2.76 -10.07 -0.03 -2.66 16 17 C -0.12 -2.86 4.87 31.67 0.15 -2.70 16 18 C -0.12 -2.46 6.91 31.89 0.22 -2.24 16 19 C -0.12 -3.24 6.45 31.67 0.20 -3.03 16 20 C -0.13 -3.86 5.76 31.32 0.18 -3.68 16 21 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 22 H -0.05 -2.92 7.54 -2.38 -0.02 -2.94 16 23 H -0.01 -0.34 7.08 -2.39 -0.02 -0.36 16 24 H 0.33 14.16 5.55 -89.69 -0.50 13.66 16 25 H 0.12 3.24 7.24 -2.39 -0.02 3.22 16 26 H 0.08 2.37 8.05 -2.39 -0.02 2.35 16 27 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.06 2.49 7.09 -2.39 -0.02 2.48 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 1.84 6.64 -2.39 -0.02 1.82 16 32 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 33 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.48 7.75 -2.39 -0.02 1.46 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.03 1.13 6.58 -2.38 -0.02 1.12 16 Total: -1.00 -65.01 295.52 2.69 -62.32 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.52 Total: 22.69 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 2.51 Total: -42.46 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -2.37 Total: -89.99 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -65.01 2.69 -62.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723869401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.526 kcal (2) G-P(sol) polarization free energy of solvation -65.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds