Wall clock time and date at job start Mon Mar 30 2020 02:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00050 * 2 1 4 4 H 1.48505 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47100 * 300.00260 * 3 2 1 6 6 H 1.48498 * 109.47136 * 60.00701 * 3 2 1 7 7 C 1.37882 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99599 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47180 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47124 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47208 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00398 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47444 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47445 * 179.97438 * 14 13 12 16 16 C 1.54639 * 111.03467 * 72.97178 * 15 14 13 17 17 C 1.51102 * 104.72213 * 142.67029 * 16 15 14 18 18 C 1.30534 * 111.10436 * 343.56216 * 17 16 15 19 19 C 1.51096 * 111.10422 * 0.02562 * 18 17 16 20 20 H 0.96995 * 119.99605 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47091 * 60.00278 * 9 7 2 22 22 H 1.09001 * 109.46698 * 300.00345 * 9 7 2 23 23 H 1.08992 * 109.47085 * 59.99446 * 10 9 7 24 24 H 1.09001 * 109.46615 * 299.99797 * 10 9 7 25 25 H 1.09001 * 109.47658 * 59.99417 * 11 10 9 26 26 H 1.09001 * 109.46983 * 299.99294 * 11 10 9 27 27 H 1.00907 * 111.00154 * 56.04274 * 12 11 10 28 28 H 1.08998 * 109.47059 * 59.99300 * 13 12 11 29 29 H 1.09000 * 109.46710 * 300.00120 * 13 12 11 30 30 H 1.09000 * 109.47345 * 60.00115 * 14 13 12 31 31 H 1.09000 * 109.47269 * 299.99782 * 14 13 12 32 32 H 1.09007 * 110.94289 * 308.99201 * 15 14 13 33 33 H 1.08992 * 110.38567 * 23.86009 * 16 15 14 34 34 H 1.08997 * 110.38675 * 261.47791 * 16 15 14 35 35 H 1.07997 * 124.44898 * 163.82826 * 17 16 15 36 36 H 1.07996 * 124.44503 * 179.97438 * 18 17 16 37 37 H 1.08994 * 110.38987 * 135.24587 * 19 18 17 38 38 H 1.09002 * 110.38585 * 257.51121 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7345 -7.3950 -0.0018 14 6 2.7593 -8.5310 -0.0031 15 6 2.0300 -9.8760 -0.0025 16 6 1.3923 -10.1622 -1.3819 17 6 1.5693 -11.6489 -1.5857 18 6 2.4621 -12.1327 -0.7655 19 6 3.0289 -11.0495 0.1224 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.8719 -3.6044 0.8893 24 1 2.8718 -3.6044 -0.8906 25 1 0.8537 -5.0446 -0.8913 26 1 0.8534 -5.0451 0.8887 27 1 3.0697 -6.0370 0.7796 28 1 1.1091 -7.4692 -0.8915 29 1 1.1099 -7.4696 0.8884 30 1 3.3849 -8.4570 0.8864 31 1 3.3835 -8.4562 -0.8936 32 1 1.2820 -9.9132 0.7896 33 1 1.9120 -9.6074 -2.1629 34 1 0.3334 -9.9038 -1.3717 35 1 1.0312 -12.2336 -2.3170 36 1 2.7564 -13.1711 -0.7262 37 1 3.0830 -11.3944 1.1549 38 1 4.0159 -10.7484 -0.2288 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724202119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:25 Heat of formation + Delta-G solvation = -15.857981 kcal Electronic energy + Delta-G solvation = -14425.613255 eV Core-core repulsion = 12073.812446 eV Total energy + Delta-G solvation = -2351.800809 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.13576 -36.49083 -33.83897 -32.30979 -30.50723 -28.39881 -27.28408 -25.31239 -22.60562 -21.85861 -20.28167 -19.86164 -18.91820 -16.42062 -16.28655 -15.75155 -15.12145 -14.51334 -13.99499 -13.97144 -13.67430 -12.88693 -12.44478 -12.37040 -12.26622 -11.88455 -11.64399 -11.41242 -11.35239 -11.12560 -10.97559 -10.79546 -10.56551 -10.52997 -10.39694 -9.65929 -9.29783 -9.09678 -9.00808 -8.32030 -8.12489 -5.97021 -3.98891 2.04584 3.33228 3.40418 3.45192 4.25762 4.43433 4.47844 4.51817 4.90110 5.02838 5.20536 5.20896 5.28588 5.38815 5.52918 5.58144 5.61228 5.70716 5.78667 5.81760 5.87564 5.90841 6.00931 6.12090 6.29122 6.32420 6.36236 6.67779 6.75874 6.81253 7.17531 7.39420 7.67926 7.72370 7.87332 8.03889 8.47332 9.08702 9.64996 11.14561 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.090577 B = 0.003275 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.055709 B = 8548.867699 C = 8697.046725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.693 5.693 13 C 0.057 3.943 14 C -0.107 4.107 15 C -0.092 4.092 16 C -0.099 4.099 17 C -0.166 4.166 18 C -0.173 4.173 19 C -0.097 4.097 20 H 0.259 0.741 21 H 0.016 0.984 22 H 0.013 0.987 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.336 0.664 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 -21.956 -0.197 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.324 5.324 13 C -0.072 4.072 14 C -0.145 4.145 15 C -0.111 4.111 16 C -0.136 4.136 17 C -0.184 4.184 18 C -0.191 4.191 19 C -0.134 4.134 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.032 0.968 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.153 0.847 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.711 -21.815 -0.882 22.146 hybrid contribution -0.014 0.817 0.884 1.204 sum 3.697 -20.997 0.002 21.320 Atomic orbital electron populations 1.69981 1.06068 1.26422 1.51198 1.25043 0.94856 0.99290 0.95427 0.86535 0.80148 0.83791 0.77535 1.19715 1.21019 1.21061 1.21308 0.93107 0.91063 1.50107 0.92608 1.19076 0.94044 0.91421 0.97104 1.21622 0.99169 0.93026 1.00692 1.22121 0.94137 0.90878 0.99837 1.60568 1.20490 1.01595 1.49723 1.21958 0.95739 0.89164 1.00338 1.21583 0.97935 0.92316 1.02644 1.22037 0.97384 0.94222 0.97434 1.21502 1.01257 0.93588 0.97278 1.23343 0.99004 0.96613 0.99456 1.23282 0.98467 0.98873 0.98433 1.21432 0.99160 0.93601 0.99228 0.93110 0.96575 0.96828 0.93682 0.92578 0.91560 0.95860 0.84686 0.91194 0.95759 0.92003 0.90905 0.90412 0.90230 0.91228 0.86171 0.86215 0.91417 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 11 C 0.06 1.06 5.68 -3.83 -0.02 1.03 16 12 N -0.69 -10.46 6.50 -113.79 -0.74 -11.20 16 13 C 0.06 0.72 5.59 -3.83 -0.02 0.70 16 14 C -0.11 -1.09 4.84 -26.73 -0.13 -1.22 16 15 C -0.09 -0.84 3.12 -88.91 -0.28 -1.12 16 16 C -0.10 -0.91 5.87 -26.82 -0.16 -1.07 16 17 C -0.17 -1.44 10.78 -35.70 -0.38 -1.82 16 18 C -0.17 -1.44 10.78 -35.70 -0.38 -1.83 16 19 C -0.10 -0.82 6.38 -26.84 -0.17 -0.99 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.34 4.72 8.73 -39.29 -0.34 4.38 16 28 H 0.07 0.89 7.76 -51.93 -0.40 0.49 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.77 7.74 -51.93 -0.40 0.36 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -30.34 310.41 -9.60 -39.94 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.01 Total: -1.51 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -2.24 Total: -22.17 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.00 Total: -37.93 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.34 -9.60 -39.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724202119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.082 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds