Wall clock time and date at job start Mon Mar 30 2020 02:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00050 * 2 1 4 4 H 1.48505 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47100 * 300.00260 * 3 2 1 6 6 H 1.48498 * 109.47136 * 60.00701 * 3 2 1 7 7 C 1.37882 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99599 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47180 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47124 * 180.02562 * 10 9 7 12 12 N 1.46896 * 109.47208 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00398 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47444 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47445 * 179.97438 * 14 13 12 16 16 C 1.54639 * 111.03467 * 72.97178 * 15 14 13 17 17 C 1.51102 * 104.72213 * 142.67029 * 16 15 14 18 18 C 1.30534 * 111.10436 * 343.56216 * 17 16 15 19 19 C 1.51096 * 111.10422 * 0.02562 * 18 17 16 20 20 H 0.96995 * 119.99605 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47091 * 60.00278 * 9 7 2 22 22 H 1.09001 * 109.46698 * 300.00345 * 9 7 2 23 23 H 1.08992 * 109.47085 * 59.99446 * 10 9 7 24 24 H 1.09001 * 109.46615 * 299.99797 * 10 9 7 25 25 H 1.09001 * 109.47658 * 59.99417 * 11 10 9 26 26 H 1.09001 * 109.46983 * 299.99294 * 11 10 9 27 27 H 1.00907 * 111.00154 * 56.04274 * 12 11 10 28 28 H 1.08998 * 109.47059 * 59.99300 * 13 12 11 29 29 H 1.09000 * 109.46710 * 300.00120 * 13 12 11 30 30 H 1.09000 * 109.47345 * 60.00115 * 14 13 12 31 31 H 1.09000 * 109.47269 * 299.99782 * 14 13 12 32 32 H 1.09007 * 110.94289 * 308.99201 * 15 14 13 33 33 H 1.08992 * 110.38567 * 23.86009 * 16 15 14 34 34 H 1.08997 * 110.38675 * 261.47791 * 16 15 14 35 35 H 1.07997 * 124.44898 * 163.82826 * 17 16 15 36 36 H 1.07996 * 124.44503 * 179.97438 * 18 17 16 37 37 H 1.08994 * 110.38987 * 135.24587 * 19 18 17 38 38 H 1.09002 * 110.38585 * 257.51121 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7345 -7.3950 -0.0018 14 6 2.7593 -8.5310 -0.0031 15 6 2.0300 -9.8760 -0.0025 16 6 1.3923 -10.1622 -1.3819 17 6 1.5693 -11.6489 -1.5857 18 6 2.4621 -12.1327 -0.7655 19 6 3.0289 -11.0495 0.1224 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.8719 -3.6044 0.8893 24 1 2.8718 -3.6044 -0.8906 25 1 0.8537 -5.0446 -0.8913 26 1 0.8534 -5.0451 0.8887 27 1 3.0697 -6.0370 0.7796 28 1 1.1091 -7.4692 -0.8915 29 1 1.1099 -7.4696 0.8884 30 1 3.3849 -8.4570 0.8864 31 1 3.3835 -8.4562 -0.8936 32 1 1.2820 -9.9132 0.7896 33 1 1.9120 -9.6074 -2.1629 34 1 0.3334 -9.9038 -1.3717 35 1 1.0312 -12.2336 -2.3170 36 1 2.7564 -13.1711 -0.7262 37 1 3.0830 -11.3944 1.1549 38 1 4.0159 -10.7484 -0.2288 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724202119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:25 Heat of formation + Delta-G solvation = -33.192510 kcal Electronic energy + Delta-G solvation = -14426.364936 eV Core-core repulsion = 12073.812446 eV Total energy + Delta-G solvation = -2352.552490 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85959 -37.80649 -35.65459 -33.88363 -31.96625 -29.10571 -28.67089 -26.79836 -24.24571 -23.00331 -21.87811 -20.81139 -19.57029 -18.49278 -17.26555 -16.80245 -16.54065 -16.09053 -15.41602 -15.11503 -15.01502 -14.26575 -13.69395 -13.58205 -13.49989 -13.04570 -12.98312 -12.76373 -12.57745 -12.44897 -12.31114 -11.99773 -11.95929 -11.83844 -11.54025 -11.38636 -11.31010 -11.02039 -10.56469 -9.74650 -9.37038 -8.20779 -6.31951 1.40048 1.40581 1.40759 1.54321 2.40956 3.12295 3.19803 3.69016 3.79204 4.04367 4.16675 4.26520 4.38825 4.41898 4.49659 4.53907 4.68310 4.71336 4.88461 4.90523 4.93595 4.95293 5.06368 5.07929 5.14625 5.18555 5.23179 5.28439 5.50817 5.52222 5.67799 5.74251 5.85280 6.04631 6.07286 6.26824 6.50690 6.85291 7.37429 8.91538 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.090577 B = 0.003275 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.055709 B = 8548.867699 C = 8697.046725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.071 3.929 12 N -0.695 5.695 13 C 0.058 3.942 14 C -0.097 4.097 15 C -0.090 4.090 16 C -0.103 4.103 17 C -0.178 4.178 18 C -0.174 4.174 19 C -0.098 4.098 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.009 1.009 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.022 0.978 27 H 0.344 0.656 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -22.576 0.089 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.058 4.058 12 N -0.326 5.326 13 C -0.071 4.071 14 C -0.134 4.134 15 C -0.109 4.109 16 C -0.140 4.140 17 C -0.196 4.196 18 C -0.192 4.192 19 C -0.135 4.135 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.009 0.991 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.162 0.838 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.095 0.905 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.977 -22.457 -0.594 23.010 hybrid contribution -0.433 0.973 0.794 1.329 sum 4.544 -21.484 0.200 21.960 Atomic orbital electron populations 1.70109 1.07846 1.27750 1.51823 1.26026 0.95817 1.03505 0.94705 0.85361 0.79058 0.78563 0.77839 1.18556 1.20307 1.20238 1.21738 0.93575 0.92398 1.50369 0.92196 1.18984 0.94450 0.93187 0.94727 1.21378 0.98017 0.92903 1.00764 1.21828 0.94042 0.90413 0.99517 1.60493 1.20068 1.01729 1.50289 1.22013 0.96289 0.88475 1.00279 1.21480 0.97292 0.91904 1.02759 1.22003 0.97573 0.93936 0.97417 1.21516 1.01094 0.94226 0.97125 1.23476 0.99664 0.96291 1.00185 1.23493 0.98061 0.99643 0.97972 1.21449 0.98898 0.93240 0.99900 0.92740 0.99088 0.99086 0.92993 0.92919 0.92227 0.95984 0.83784 0.91641 0.95414 0.91184 0.91434 0.90370 0.90945 0.91397 0.85079 0.84655 0.90483 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.96 5.41 30.59 0.17 -3.79 16 11 C 0.07 2.54 5.68 86.30 0.49 3.03 16 12 N -0.69 -20.15 6.50 -513.92 -3.34 -23.49 16 13 C 0.06 1.39 5.59 86.30 0.48 1.87 16 14 C -0.10 -1.83 4.84 30.59 0.15 -1.68 16 15 C -0.09 -1.53 3.12 -9.68 -0.03 -1.56 16 16 C -0.10 -1.79 5.87 30.53 0.18 -1.61 16 17 C -0.18 -2.83 10.78 26.25 0.28 -2.54 16 18 C -0.17 -2.57 10.78 26.25 0.28 -2.29 16 19 C -0.10 -1.46 6.38 30.52 0.19 -1.26 16 20 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 21 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 22 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 23 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.34 9.11 8.73 -89.69 -0.78 8.32 16 28 H 0.07 1.62 7.76 -2.39 -0.02 1.60 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.37 7.92 -2.39 -0.02 1.35 16 32 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.07 1.35 7.74 -2.39 -0.02 1.33 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.15 7.89 -2.39 -0.02 1.13 16 Total: -1.00 -64.20 310.41 2.22 -61.98 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.21 Total: 11.80 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 3.04 Total: -39.62 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -3.06 Total: -81.16 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.20 2.22 -61.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724202119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.787 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds