Wall clock time and date at job start Mon Mar 30 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99978 * 2 1 4 4 H 1.48501 * 109.47143 * 239.99662 * 3 2 1 5 5 H 1.48502 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47104 * 119.99224 * 3 2 1 7 7 C 1.37872 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47049 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46875 * 180.02562 * 11 10 9 13 13 C 1.48914 * 111.01694 * 67.41584 * 12 11 10 14 14 C 1.54445 * 104.70528 * 157.65451 * 13 12 11 15 15 C 1.54484 * 105.15223 * 336.53361 * 14 13 12 16 16 C 1.47508 * 110.99851 * 182.83033 * 12 11 10 17 17 C 1.52763 * 115.63618 * 331.86290 * 16 12 11 18 18 C 1.53965 * 86.77319 * 92.82525 * 17 16 12 19 19 C 1.52754 * 115.64602 * 72.83510 * 16 12 11 20 20 H 0.97000 * 119.99779 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47306 * 60.00036 * 9 7 2 22 22 H 1.08997 * 109.47502 * 299.99506 * 9 7 2 23 23 H 1.09000 * 109.46709 * 60.00130 * 10 9 7 24 24 H 1.08997 * 109.46989 * 300.00280 * 10 9 7 25 25 H 1.09000 * 109.47250 * 60.00472 * 11 10 9 26 26 H 1.08998 * 109.46944 * 300.00054 * 11 10 9 27 27 H 1.09004 * 110.35715 * 38.88211 * 13 12 11 28 28 H 1.09001 * 110.46930 * 276.48360 * 13 12 11 29 29 H 1.09001 * 110.32578 * 217.58490 * 14 13 12 30 30 H 1.09002 * 110.32640 * 95.48618 * 14 13 12 31 31 H 1.08999 * 110.38749 * 119.50138 * 15 14 13 32 32 H 1.09008 * 110.38507 * 241.86178 * 15 14 13 33 33 H 1.08997 * 113.66375 * 207.30112 * 17 16 12 34 34 H 1.09001 * 113.66480 * 338.35768 * 17 16 12 35 35 H 1.09000 * 113.58490 * 270.07552 * 18 17 16 36 36 H 1.08999 * 113.65475 * 139.27682 * 18 17 16 37 37 H 1.09000 * 113.66936 * 21.65674 * 19 16 12 38 38 H 1.09004 * 113.66070 * 152.71471 * 19 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 3.1876 -6.1619 1.2853 14 6 3.6808 -7.6222 1.3846 15 6 2.7108 -8.4369 0.5005 16 6 1.7330 -7.3992 -0.0656 17 6 0.3269 -7.4210 0.5311 18 6 -0.1852 -7.1049 -0.8861 19 6 1.1107 -7.7445 -1.4172 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8719 -3.6043 0.8906 24 1 2.8719 -3.6043 -0.8894 25 1 0.8534 -5.0451 -0.8886 26 1 0.8539 -5.0445 0.8914 27 1 2.5298 -5.9258 2.1218 28 1 4.0345 -5.4761 1.2621 29 1 3.6335 -7.9684 2.4171 30 1 4.6992 -7.7045 1.0048 31 1 3.2540 -8.9270 -0.3074 32 1 2.1769 -9.1733 1.1013 33 1 0.0224 -8.4011 0.8979 34 1 0.1444 -6.6225 1.2504 35 1 -0.2619 -6.0377 -1.0942 36 1 -1.0862 -7.6547 -1.1582 37 1 1.5541 -7.2046 -2.2538 38 1 1.0270 -8.8160 -1.5993 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769985757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:07 Heat of formation + Delta-G solvation = 13.693248 kcal Electronic energy + Delta-G solvation = -15762.272051 eV Core-core repulsion = 13411.752679 eV Total energy + Delta-G solvation = -2350.519371 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62379 -35.38901 -34.26379 -32.45493 -30.03963 -27.19604 -26.13482 -25.65248 -23.37418 -21.61033 -20.97100 -19.59522 -18.40360 -16.30421 -15.78656 -15.40993 -15.06477 -14.49441 -14.40630 -13.66929 -13.05810 -12.71040 -12.36424 -12.22045 -12.13310 -11.83125 -11.65998 -11.26856 -11.10224 -10.88032 -10.73266 -10.60978 -10.50278 -10.21782 -10.05637 -9.97384 -9.48387 -9.27953 -9.01473 -8.30831 -8.10130 -5.96335 -3.98293 3.35970 3.39852 3.42806 4.11575 4.49221 4.61108 4.67711 4.81927 4.94622 5.04449 5.22961 5.32252 5.39322 5.60850 5.62653 5.72092 5.75599 5.84816 5.88371 5.93869 5.99345 6.03087 6.08756 6.25278 6.27595 6.31355 6.40102 6.50144 6.75377 6.89520 7.12385 7.30933 7.48021 7.71977 7.87536 8.04266 8.47982 9.08673 9.65465 11.15128 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.043162 B = 0.005830 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.565101 B = 4801.873217 C = 5220.469676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.035 3.965 12 N -0.486 5.486 13 C 0.035 3.965 14 C -0.125 4.125 15 C -0.109 4.109 16 C 0.071 3.929 17 C -0.164 4.164 18 C -0.151 4.151 19 C -0.124 4.124 20 H 0.260 0.740 21 H 0.015 0.985 22 H 0.013 0.987 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -16.893 1.082 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.092 4.092 12 N -0.209 5.209 13 C -0.093 4.093 14 C -0.163 4.163 15 C -0.147 4.147 16 C -0.020 4.020 17 C -0.203 4.203 18 C -0.188 4.188 19 C -0.162 4.162 20 H 0.070 0.930 21 H 0.033 0.967 22 H 0.031 0.969 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.023 -16.669 0.620 16.953 hybrid contribution -0.197 0.921 0.753 1.206 sum 2.826 -15.748 1.373 16.058 Atomic orbital electron populations 1.69959 1.06052 1.26626 1.51030 1.25023 0.94843 0.99215 0.95400 0.86661 0.79580 0.83161 0.78617 1.20226 1.21310 1.20285 1.21222 0.93009 0.91082 1.50357 0.92765 1.19063 0.94016 0.91410 0.96995 1.21633 0.99135 0.92819 1.00674 1.22751 0.94423 0.91172 1.00818 1.65193 1.22801 1.00757 1.32117 1.23135 0.98515 0.96584 0.91072 1.22341 0.99515 0.95026 0.99394 1.22111 0.96736 0.96922 0.98924 1.22457 0.91725 0.91329 0.96480 1.23386 0.97414 1.01892 0.97601 1.23196 0.97278 1.02200 0.96133 1.22778 0.96055 1.00299 0.97021 0.93011 0.96669 0.96901 0.93665 0.92717 0.90226 0.94701 0.93865 0.89940 0.91804 0.91318 0.91137 0.91654 0.90209 0.91041 0.88757 0.91874 0.90655 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.10 -2.26 5.17 -26.73 -0.14 -2.40 16 11 C 0.04 0.64 3.68 -3.82 -0.01 0.63 16 12 N -0.49 -7.70 5.28 -215.93 -1.14 -8.84 16 13 C 0.03 0.50 5.66 -1.95 -0.01 0.49 16 14 C -0.12 -1.44 7.01 -25.19 -0.18 -1.61 16 15 C -0.11 -1.23 6.41 -25.74 -0.17 -1.39 16 16 C 0.07 0.94 1.09 -131.32 -0.14 0.79 16 17 C -0.16 -2.09 6.94 -26.35 -0.18 -2.27 16 18 C -0.15 -1.94 7.47 -25.73 -0.19 -2.13 16 19 C -0.12 -1.53 7.46 -26.35 -0.20 -1.72 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 24 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.08 1.45 5.21 -51.93 -0.27 1.18 16 26 H 0.03 0.64 6.08 -51.93 -0.32 0.33 16 27 H 0.04 0.64 7.84 -51.93 -0.41 0.23 16 28 H 0.08 1.22 7.80 -51.93 -0.41 0.82 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 32 H 0.06 0.65 7.84 -51.92 -0.41 0.24 16 33 H 0.08 0.88 7.98 -51.93 -0.41 0.47 16 34 H 0.07 1.02 6.26 -51.93 -0.33 0.69 16 35 H 0.09 1.38 5.28 -51.93 -0.27 1.10 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 290.64 15.07 4.38 4.38 Total: -1.00 -30.16 290.64 -9.35 -39.51 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.54 Total: -2.40 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -1.77 Total: -22.98 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.40 Total: -35.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.16 -9.35 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769985757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.205 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds