Wall clock time and date at job start Mon Mar 30 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99978 * 2 1 4 4 H 1.48501 * 109.47143 * 239.99662 * 3 2 1 5 5 H 1.48502 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47104 * 119.99224 * 3 2 1 7 7 C 1.37872 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47049 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.46875 * 180.02562 * 11 10 9 13 13 C 1.48914 * 111.01694 * 67.41584 * 12 11 10 14 14 C 1.54445 * 104.70528 * 157.65451 * 13 12 11 15 15 C 1.54484 * 105.15223 * 336.53361 * 14 13 12 16 16 C 1.47508 * 110.99851 * 182.83033 * 12 11 10 17 17 C 1.52763 * 115.63618 * 331.86290 * 16 12 11 18 18 C 1.53965 * 86.77319 * 92.82525 * 17 16 12 19 19 C 1.52754 * 115.64602 * 72.83510 * 16 12 11 20 20 H 0.97000 * 119.99779 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47306 * 60.00036 * 9 7 2 22 22 H 1.08997 * 109.47502 * 299.99506 * 9 7 2 23 23 H 1.09000 * 109.46709 * 60.00130 * 10 9 7 24 24 H 1.08997 * 109.46989 * 300.00280 * 10 9 7 25 25 H 1.09000 * 109.47250 * 60.00472 * 11 10 9 26 26 H 1.08998 * 109.46944 * 300.00054 * 11 10 9 27 27 H 1.09004 * 110.35715 * 38.88211 * 13 12 11 28 28 H 1.09001 * 110.46930 * 276.48360 * 13 12 11 29 29 H 1.09001 * 110.32578 * 217.58490 * 14 13 12 30 30 H 1.09002 * 110.32640 * 95.48618 * 14 13 12 31 31 H 1.08999 * 110.38749 * 119.50138 * 15 14 13 32 32 H 1.09008 * 110.38507 * 241.86178 * 15 14 13 33 33 H 1.08997 * 113.66375 * 207.30112 * 17 16 12 34 34 H 1.09001 * 113.66480 * 338.35768 * 17 16 12 35 35 H 1.09000 * 113.58490 * 270.07552 * 18 17 16 36 36 H 1.08999 * 113.65475 * 139.27682 * 18 17 16 37 37 H 1.09000 * 113.66936 * 21.65674 * 19 16 12 38 38 H 1.09004 * 113.66070 * 152.71471 * 19 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0018 13 6 3.1876 -6.1619 1.2853 14 6 3.6808 -7.6222 1.3846 15 6 2.7108 -8.4369 0.5005 16 6 1.7330 -7.3992 -0.0656 17 6 0.3269 -7.4210 0.5311 18 6 -0.1852 -7.1049 -0.8861 19 6 1.1107 -7.7445 -1.4172 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8719 -3.6043 0.8906 24 1 2.8719 -3.6043 -0.8894 25 1 0.8534 -5.0451 -0.8886 26 1 0.8539 -5.0445 0.8914 27 1 2.5298 -5.9258 2.1218 28 1 4.0345 -5.4761 1.2621 29 1 3.6335 -7.9684 2.4171 30 1 4.6992 -7.7045 1.0048 31 1 3.2540 -8.9270 -0.3074 32 1 2.1769 -9.1733 1.1013 33 1 0.0224 -8.4011 0.8979 34 1 0.1444 -6.6225 1.2504 35 1 -0.2619 -6.0377 -1.0942 36 1 -1.0862 -7.6547 -1.1582 37 1 1.5541 -7.2046 -2.2538 38 1 1.0270 -8.8160 -1.5993 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769985757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:07 Heat of formation + Delta-G solvation = -4.429964 kcal Electronic energy + Delta-G solvation = -15763.057932 eV Core-core repulsion = 13411.752679 eV Total energy + Delta-G solvation = -2351.305253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.71752 -36.71341 -35.87424 -34.30928 -31.70901 -28.22986 -27.96369 -26.67640 -25.00752 -23.17257 -22.08426 -21.12025 -19.52159 -18.47390 -17.00062 -16.52764 -16.45652 -16.23683 -15.90171 -14.82909 -14.43611 -14.31654 -13.79051 -13.77044 -13.27121 -13.18175 -13.06485 -12.83473 -12.60343 -12.39929 -12.30402 -12.12534 -11.77222 -11.67596 -11.39171 -11.22763 -11.15219 -10.95188 -10.87827 -10.56586 -9.35017 -8.21782 -6.33444 1.38428 1.42104 1.50126 2.39679 2.96456 3.10933 3.58994 3.65839 3.78465 3.92992 4.01766 4.17950 4.22222 4.33315 4.41540 4.63291 4.69831 4.73603 4.78148 4.84816 4.87374 4.96129 4.98715 5.04004 5.11251 5.13568 5.17361 5.24822 5.32825 5.35497 5.48559 5.51833 5.71062 5.82549 6.05887 6.15756 6.27489 6.82577 7.35824 8.90079 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.043162 B = 0.005830 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.565101 B = 4801.873217 C = 5220.469676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.089 4.089 11 C 0.051 3.949 12 N -0.498 5.498 13 C 0.028 3.972 14 C -0.118 4.118 15 C -0.104 4.104 16 C 0.061 3.939 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.117 4.117 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.011 1.011 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -18.239 1.268 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.127 4.127 11 C -0.076 4.076 12 N -0.220 5.220 13 C -0.100 4.100 14 C -0.156 4.156 15 C -0.142 4.142 16 C -0.029 4.029 17 C -0.198 4.198 18 C -0.193 4.193 19 C -0.154 4.154 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.007 0.993 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.117 -18.034 0.805 18.515 hybrid contribution -0.575 1.325 0.693 1.602 sum 3.542 -16.709 1.498 17.146 Atomic orbital electron populations 1.70095 1.07825 1.27904 1.51541 1.26002 0.95808 1.03418 0.94567 0.85478 0.78291 0.77929 0.79224 1.19154 1.20567 1.19132 1.21648 0.93466 0.92422 1.50827 0.92401 1.18943 0.94308 0.93094 0.94574 1.21378 0.97969 0.93076 1.00284 1.22429 0.94192 0.90663 1.00364 1.65135 1.22564 1.01236 1.33104 1.23209 0.97859 0.98850 0.90073 1.22329 0.99885 0.92618 1.00759 1.22138 0.96208 0.96478 0.99349 1.22635 0.92459 0.90401 0.97448 1.23396 0.97079 1.02467 0.96857 1.23159 0.98627 1.00890 0.96637 1.22811 0.95032 1.01697 0.95903 0.92692 0.99082 0.99308 0.93601 0.93288 0.90647 0.95418 0.94761 0.90932 0.90005 0.90535 0.90101 0.89542 0.87623 0.93185 0.91455 0.90121 0.92150 0.87287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.23 13.29 21.45 0.28 -57.94 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -32.41 9.11 25.60 0.23 -32.18 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.09 -3.99 5.17 30.60 0.16 -3.83 16 11 C 0.05 1.92 3.68 86.30 0.32 2.24 16 12 N -0.50 -15.61 5.28 -837.07 -4.42 -20.03 16 13 C 0.03 0.78 5.66 86.40 0.49 1.27 16 14 C -0.12 -2.41 7.01 31.59 0.22 -2.19 16 15 C -0.10 -1.99 6.41 31.23 0.20 -1.79 16 16 C 0.06 1.51 1.09 3.38 0.00 1.51 16 17 C -0.16 -3.82 6.94 30.84 0.21 -3.61 16 18 C -0.16 -3.87 7.47 31.24 0.23 -3.64 16 19 C -0.12 -2.66 7.46 30.84 0.23 -2.43 16 20 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 21 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 22 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 23 H 0.05 2.01 7.20 -2.39 -0.02 1.99 16 24 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.08 2.88 5.21 -2.39 -0.01 2.87 16 26 H 0.03 1.07 6.08 -2.39 -0.01 1.05 16 27 H 0.03 1.01 7.84 -2.39 -0.02 0.99 16 28 H 0.07 2.14 7.80 -2.39 -0.02 2.12 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.09 1.33 7.84 -2.38 -0.02 1.31 16 33 H 0.11 1.99 7.98 -2.39 -0.02 1.97 16 34 H 0.05 1.42 6.26 -2.39 -0.01 1.40 16 35 H 0.07 2.04 5.28 -2.39 -0.01 2.02 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -65.59 290.64 1.81 -63.78 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.01 Total: 9.32 kcal Atomic # 6 Polarization: -45.39 SS G_CDS: 2.91 Total: -42.48 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -4.13 Total: -77.97 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -65.59 1.81 -63.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769985757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.355 kcal (2) G-P(sol) polarization free energy of solvation -65.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds