Wall clock time and date at job start Mon Mar 30 2020 02:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 H 1.08004 * 119.99635 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00060 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47036 * 89.99826 * 9 7 5 11 11 H 1.48495 * 109.47049 * 209.99969 * 9 7 5 12 12 H 1.48501 * 109.46661 * 329.99884 * 9 7 5 13 13 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 14 14 C 1.46901 * 110.99793 * 85.00144 * 13 2 1 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 2 16 16 C 1.34669 * 126.58925 * 95.02181 * 15 14 13 17 17 N 1.34127 * 108.02118 * 179.97438 * 16 15 14 18 18 C 1.30500 * 109.25504 * 0.02562 * 17 16 15 19 19 N 1.35050 * 108.69866 * 359.76930 * 18 17 16 20 20 C 1.46495 * 126.39799 * 180.26529 * 19 18 17 21 21 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 22 22 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 23 23 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 25 25 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 26 26 H 0.97002 * 119.99748 * 179.97438 * 8 7 5 27 27 H 1.00898 * 110.99995 * 208.95221 * 13 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 30 30 H 1.08003 * 125.99246 * 359.96696 * 16 15 14 31 31 H 1.08000 * 125.64829 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.47603 * 270.12691 * 20 19 18 33 33 H 1.09004 * 109.46739 * 30.11871 * 20 19 18 34 34 H 1.08998 * 109.47244 * 150.11766 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5395 7 6 4.2304 -1.1935 2.3577 8 7 3.5765 -1.8386 3.2989 9 14 6.0921 -1.0612 2.4367 10 1 6.4699 0.1610 3.1909 11 1 6.6447 -2.2567 3.1226 12 1 6.6416 -0.9825 1.0593 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5884 -0.5216 -3.5558 16 6 1.8395 -1.0993 -4.5143 17 7 2.6687 -1.6550 -5.4102 18 6 3.9030 -1.4440 -5.0429 19 7 3.8975 -0.7360 -3.8929 20 6 5.0731 -0.2835 -3.1451 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7715 1.2056 26 1 4.0610 -2.2459 4.0339 27 1 2.9172 -1.1205 -1.0288 28 1 2.7588 1.0462 -2.1183 29 1 1.0870 0.6163 -2.5525 30 1 0.7603 -1.1130 -4.5546 31 1 4.7831 -1.7772 -5.5728 32 1 5.3602 -1.0473 -2.4223 33 1 5.8980 -0.1088 -3.8358 34 1 4.8360 0.6422 -2.6207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829188754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:16 Heat of formation + Delta-G solvation = 48.860070 kcal Electronic energy + Delta-G solvation = -15288.829717 eV Core-core repulsion = 12836.294950 eV Total energy + Delta-G solvation = -2452.534767 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.85142 -36.71576 -33.85496 -32.99733 -31.49285 -28.54128 -27.45109 -26.83814 -24.49631 -22.86373 -21.22003 -19.77298 -19.41989 -16.85452 -16.43434 -15.63031 -15.18445 -14.67806 -14.37317 -14.18557 -13.51995 -13.10836 -12.77274 -12.71361 -12.42598 -12.06465 -11.84570 -11.61045 -11.30072 -11.06254 -10.75156 -10.62498 -10.30800 -9.79794 -9.41882 -9.30130 -9.15204 -8.48424 -8.16360 -7.71956 -6.10533 -4.14364 2.22619 2.96010 3.20902 3.26912 3.29042 3.37825 4.33816 4.78696 4.81943 4.86466 5.09701 5.20078 5.29949 5.32984 5.51423 5.66580 5.83076 5.94540 6.04112 6.16978 6.25798 6.48217 6.57799 6.87899 6.89363 6.95535 7.35201 7.44732 7.54609 7.88689 7.96728 8.15601 8.26311 8.28227 8.91353 9.49551 11.00386 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.008254 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.614797 B = 3391.555532 C = 4261.091715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.029 0.971 4 C 0.020 3.980 5 C -0.525 4.525 6 H 0.049 0.951 7 C 0.061 3.939 8 N -0.888 5.888 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.676 5.676 14 C 0.133 3.867 15 C -0.008 4.008 16 C -0.019 4.019 17 N -0.499 5.499 18 C 0.170 3.830 19 N -0.456 5.456 20 C 0.068 3.932 21 H 0.049 0.951 22 H 0.037 0.963 23 H 0.056 0.944 24 H 0.023 0.977 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.353 0.647 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.167 0.833 31 H 0.200 0.800 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 4.330 -11.402 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.018 4.018 5 C -0.564 4.564 6 H 0.067 0.933 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.310 5.310 14 C 0.003 3.997 15 C -0.123 4.123 16 C -0.167 4.167 17 N -0.217 5.217 18 C -0.111 4.111 19 N -0.140 5.140 20 C -0.074 4.074 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.173 0.827 28 H 0.046 0.954 29 H 0.106 0.894 30 H 0.184 0.816 31 H 0.217 0.783 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.559 3.604 -12.009 12.550 hybrid contribution 2.256 0.971 1.156 2.715 sum 2.815 4.575 -10.853 12.110 Atomic orbital electron populations 1.21798 0.96452 1.01538 0.99593 1.21652 0.93617 0.95767 0.91149 0.95263 1.19288 0.95367 0.96315 0.90798 1.21118 0.92231 1.34664 1.08355 0.93288 1.24990 0.98192 0.95164 0.95729 1.69950 1.35537 1.35283 1.11910 0.86650 0.85913 0.77655 0.78038 1.20693 1.21118 1.20094 1.60631 1.34703 1.31702 1.03971 1.20322 0.99850 0.92321 0.87228 1.21324 0.83061 1.07430 1.00533 1.21981 0.99352 1.02288 0.93104 1.70232 0.99959 1.22704 1.28792 1.24804 0.97873 1.00026 0.88441 1.45299 1.06674 1.41524 1.20466 1.22081 0.86145 1.02029 0.97189 0.93231 0.94345 0.92491 0.95883 0.95505 0.92841 0.82664 0.95379 0.89428 0.81585 0.78293 0.89840 0.89658 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.41 37.16 0.35 -2.02 16 2 C 0.09 1.75 2.59 -67.71 -0.18 1.57 16 3 H 0.03 0.59 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.49 4.57 -27.88 -0.13 0.36 16 5 C -0.53 -13.90 8.12 -34.44 -0.28 -14.18 16 6 H 0.05 1.24 7.49 -52.48 -0.39 0.84 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.68 -12.74 6.30 -107.99 -0.68 -13.42 16 14 C 0.13 2.09 5.72 -4.97 -0.03 2.06 16 15 C -0.01 -0.13 6.46 -81.60 -0.53 -0.66 16 16 C -0.02 -0.30 11.79 -17.81 -0.21 -0.51 16 17 N -0.50 -8.18 11.25 -14.66 -0.16 -8.34 16 18 C 0.17 2.34 12.56 -90.37 -1.14 1.21 16 19 N -0.46 -6.38 3.15 -121.37 -0.38 -6.76 16 20 C 0.07 0.77 11.01 59.84 0.66 1.43 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.58 7.45 -51.93 -0.39 0.20 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.35 7.31 7.20 -39.29 -0.28 7.02 16 28 H 0.03 0.43 7.28 -51.93 -0.38 0.06 16 29 H 0.09 1.27 7.44 -51.93 -0.39 0.89 16 30 H 0.17 2.38 8.06 -52.48 -0.42 1.95 16 31 H 0.20 1.92 8.06 -52.49 -0.42 1.49 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.97 7.29 -51.93 -0.38 0.59 16 LS Contribution 287.78 15.07 4.34 4.34 Total: -1.00 -30.60 287.78 -7.88 -38.48 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.13 Total: 4.44 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.57 Total: -9.16 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.49 Total: -53.68 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.60 -7.88 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.340 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds