Wall clock time and date at job start Mon Mar 30 2020 02:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 H 1.08004 * 119.99635 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00060 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47036 * 89.99826 * 9 7 5 11 11 H 1.48495 * 109.47049 * 209.99969 * 9 7 5 12 12 H 1.48501 * 109.46661 * 329.99884 * 9 7 5 13 13 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 14 14 C 1.46901 * 110.99793 * 85.00144 * 13 2 1 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 2 16 16 C 1.34669 * 126.58925 * 95.02181 * 15 14 13 17 17 N 1.34127 * 108.02118 * 179.97438 * 16 15 14 18 18 C 1.30500 * 109.25504 * 0.02562 * 17 16 15 19 19 N 1.35050 * 108.69866 * 359.76930 * 18 17 16 20 20 C 1.46495 * 126.39799 * 180.26529 * 19 18 17 21 21 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 22 22 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 23 23 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 25 25 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 26 26 H 0.97002 * 119.99748 * 179.97438 * 8 7 5 27 27 H 1.00898 * 110.99995 * 208.95221 * 13 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 30 30 H 1.08003 * 125.99246 * 359.96696 * 16 15 14 31 31 H 1.08000 * 125.64829 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.47603 * 270.12691 * 20 19 18 33 33 H 1.09004 * 109.46739 * 30.11871 * 20 19 18 34 34 H 1.08998 * 109.47244 * 150.11766 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5395 7 6 4.2304 -1.1935 2.3577 8 7 3.5765 -1.8386 3.2989 9 14 6.0921 -1.0612 2.4367 10 1 6.4699 0.1610 3.1909 11 1 6.6447 -2.2567 3.1226 12 1 6.6416 -0.9825 1.0593 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5884 -0.5216 -3.5558 16 6 1.8395 -1.0993 -4.5143 17 7 2.6687 -1.6550 -5.4102 18 6 3.9030 -1.4440 -5.0429 19 7 3.8975 -0.7360 -3.8929 20 6 5.0731 -0.2835 -3.1451 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7715 1.2056 26 1 4.0610 -2.2459 4.0339 27 1 2.9172 -1.1205 -1.0288 28 1 2.7588 1.0462 -2.1183 29 1 1.0870 0.6163 -2.5525 30 1 0.7603 -1.1130 -4.5546 31 1 4.7831 -1.7772 -5.5728 32 1 5.3602 -1.0473 -2.4223 33 1 5.8980 -0.1088 -3.8358 34 1 4.8360 0.6422 -2.6207 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:16 Heat of formation + Delta-G solvation = 29.689424 kcal Electronic energy + Delta-G solvation = -15289.661018 eV Core-core repulsion = 12836.294950 eV Total energy + Delta-G solvation = -2453.366069 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.95327 -38.29199 -35.09084 -34.74515 -33.02747 -29.90672 -29.26977 -27.79731 -25.91037 -24.70908 -22.31778 -21.18436 -20.78937 -18.52304 -17.92678 -16.81774 -16.74259 -16.33261 -15.73103 -15.51192 -14.85148 -14.46863 -13.98635 -13.80134 -13.55699 -13.53383 -13.45367 -13.22198 -13.08883 -12.59737 -12.49625 -12.38365 -12.04948 -11.32953 -11.03527 -10.89620 -10.59040 -10.47371 -9.39210 -9.14343 -8.19786 -6.30969 1.10421 1.38848 1.39891 1.49595 1.96179 2.23041 2.39008 3.12535 3.51536 3.82310 3.92756 3.99618 4.12756 4.31673 4.35323 4.49184 4.63052 4.65927 4.72590 4.72769 4.93140 5.02805 5.21884 5.35549 5.43318 5.50553 5.52362 5.80799 5.83559 6.18785 6.31417 6.39086 6.54739 6.84397 7.14912 7.37914 8.91996 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.008254 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.614797 B = 3391.555532 C = 4261.091715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.097 3.903 3 H 0.032 0.968 4 C 0.025 3.975 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.254 1.254 13 N -0.681 5.681 14 C 0.140 3.860 15 C -0.025 4.025 16 C -0.033 4.033 17 N -0.534 5.534 18 C 0.180 3.820 19 N -0.459 5.459 20 C 0.064 3.936 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.046 0.954 24 H -0.004 1.004 25 H -0.007 1.007 26 H 0.262 0.738 27 H 0.340 0.660 28 H 0.034 0.966 29 H 0.101 0.899 30 H 0.173 0.827 31 H 0.239 0.761 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 5.252 -12.912 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.012 4.012 3 H 0.050 0.950 4 C -0.012 4.012 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.178 1.178 13 N -0.313 5.313 14 C 0.010 3.990 15 C -0.140 4.140 16 C -0.181 4.181 17 N -0.253 5.253 18 C -0.102 4.102 19 N -0.141 5.141 20 C -0.077 4.077 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.015 0.985 25 H 0.012 0.988 26 H 0.071 0.929 27 H 0.159 0.841 28 H 0.052 0.948 29 H 0.119 0.881 30 H 0.191 0.809 31 H 0.255 0.745 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.063 4.551 -13.535 14.428 hybrid contribution 1.775 0.668 1.592 2.477 sum 3.838 5.219 -11.943 13.587 Atomic orbital electron populations 1.21730 0.94390 1.01418 1.01213 1.21450 0.95232 0.94962 0.89586 0.95001 1.19157 0.95114 0.94596 0.92351 1.21500 0.93080 1.34057 1.08359 0.92059 1.25936 1.03484 0.94812 0.95380 1.70103 1.37663 1.36661 1.12790 0.85528 0.79626 0.77389 0.79011 1.20177 1.21451 1.17813 1.60649 1.33900 1.32550 1.04241 1.20303 1.00888 0.91777 0.85996 1.21280 0.84050 1.08194 1.00486 1.22236 1.00037 1.02428 0.93430 1.70229 1.01210 1.24074 1.29747 1.25598 0.98351 0.98304 0.87992 1.45493 1.06785 1.41240 1.20616 1.22275 0.86226 1.01377 0.97841 0.92769 0.91555 0.93489 0.98537 0.98847 0.92912 0.84118 0.94752 0.88085 0.80943 0.74453 0.90799 0.85957 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.41 71.98 0.68 -3.72 16 2 C 0.10 3.85 2.59 44.91 0.12 3.96 16 3 H 0.03 1.25 7.80 -2.39 -0.02 1.23 16 4 C 0.03 1.29 4.57 29.85 0.14 1.42 16 5 C -0.53 -28.23 8.12 25.60 0.21 -28.03 16 6 H 0.06 3.03 7.49 -2.91 -0.02 3.01 16 7 C 0.00 0.11 5.46 84.65 0.46 0.57 16 8 N -0.93 -55.54 13.29 21.44 0.28 -55.26 16 9 Si 0.96 41.89 29.54 68.60 2.03 43.92 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 13 N -0.68 -25.15 6.30 -495.56 -3.12 -28.27 16 14 C 0.14 4.16 5.72 85.56 0.49 4.65 16 15 C -0.02 -0.73 6.46 40.95 0.26 -0.47 16 16 C -0.03 -1.03 11.79 83.52 0.98 -0.04 16 17 N -0.53 -16.68 11.25 -200.30 -2.25 -18.94 16 18 C 0.18 4.47 12.56 180.26 2.26 6.74 16 19 N -0.46 -11.76 3.15 -537.89 -1.70 -13.45 16 20 C 0.06 1.27 11.01 127.77 1.41 2.67 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.07 1.87 7.45 -2.39 -0.02 1.86 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.34 13.95 7.20 -89.70 -0.65 13.31 16 28 H 0.03 0.99 7.28 -2.39 -0.02 0.97 16 29 H 0.10 2.71 7.44 -2.39 -0.02 2.69 16 30 H 0.17 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.24 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.67 7.29 -2.39 -0.02 1.66 16 Total: -1.00 -66.44 287.78 2.68 -63.76 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.43 Total: 20.48 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 7.01 Total: -12.23 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -6.79 Total: -115.92 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -66.44 2.68 -63.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.445 kcal (2) G-P(sol) polarization free energy of solvation -66.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds