Wall clock time and date at job start Mon Mar 30 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00008 * 2 1 4 4 H 1.48492 * 109.47412 * 240.00553 * 3 2 1 5 5 H 1.48498 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46851 * 120.00277 * 3 2 1 7 7 C 1.37878 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46891 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 H 1.09001 * 115.54826 * 330.72564 * 15 14 13 17 17 C 1.52997 * 117.50030 * 116.38831 * 15 14 13 18 18 C 1.52986 * 117.50165 * 185.01147 * 15 14 13 19 19 C 1.52994 * 138.59051 * 121.61791 * 18 15 14 20 20 C 1.52994 * 60.00003 * 229.10880 * 19 18 15 21 21 H 0.96999 * 120.00205 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 23 23 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 24 24 H 1.09001 * 109.47142 * 59.99807 * 10 9 7 25 25 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 26 26 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 27 27 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 28 28 H 1.08992 * 109.47056 * 59.99654 * 12 11 10 29 29 H 1.09004 * 109.47006 * 299.99770 * 12 11 10 30 30 H 1.00899 * 110.99484 * 303.95475 * 13 12 11 31 31 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 32 32 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 33 33 H 1.08999 * 117.50280 * 214.98289 * 17 15 14 34 34 H 1.08998 * 117.49777 * 0.02562 * 17 15 14 35 35 H 1.09005 * 117.49410 * 336.59725 * 19 18 15 36 36 H 1.08998 * 117.50139 * 121.61530 * 19 18 15 37 37 H 1.09005 * 117.50167 * 252.50706 * 20 19 18 38 38 H 1.09002 * 117.50231 * 107.49169 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 7 1.7401 -7.4222 0.0007 14 6 2.6646 -8.5638 -0.0005 15 6 1.8645 -9.8680 0.0015 16 1 0.8884 -9.8199 0.4841 17 6 2.0071 -10.7861 -1.2141 18 6 2.6476 -11.1769 0.1192 19 6 2.7182 -12.3925 1.0455 20 6 4.0007 -11.6614 0.6438 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8897 24 1 2.8720 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 0.8533 -5.0451 -0.8896 27 1 0.8540 -5.0446 0.8904 28 1 3.1019 -6.0921 0.8889 29 1 3.1006 -6.0923 -0.8910 30 1 1.1045 -7.4720 0.7828 31 1 3.2912 -8.5229 -0.8914 32 1 3.2939 -8.5227 0.8886 33 1 1.1249 -11.3423 -1.5309 34 1 2.6711 -10.4612 -2.0150 35 1 2.3665 -12.2660 2.0695 36 1 2.5384 -13.3728 0.6042 37 1 4.6648 -12.1606 -0.0619 38 1 4.4928 -11.0539 1.4034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829290268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:32 Heat of formation + Delta-G solvation = 29.895867 kcal Electronic energy + Delta-G solvation = -14228.070850 eV Core-core repulsion = 11878.254077 eV Total energy + Delta-G solvation = -2349.816773 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.81900 -36.50526 -34.27021 -32.88157 -31.73607 -28.58012 -25.72254 -23.64367 -22.70549 -21.49922 -21.12130 -19.95263 -19.07656 -16.21596 -15.83464 -15.55819 -15.28224 -14.93519 -14.45127 -14.24026 -13.89720 -12.97343 -12.55423 -12.34435 -11.84316 -11.72992 -11.65640 -11.47994 -11.26985 -10.96625 -10.55511 -10.52885 -10.39700 -10.20932 -10.13949 -9.98688 -9.59360 -9.22247 -8.97978 -8.34473 -8.29638 -5.95220 -3.97480 3.35863 3.37635 3.39937 3.42606 3.44292 3.96587 4.35932 4.49901 4.62880 4.64541 5.17652 5.23321 5.28222 5.31254 5.40035 5.42452 5.48292 5.49389 5.56489 5.61428 5.64987 5.73112 5.83009 5.93885 6.06459 6.19099 6.29444 6.54872 6.86126 6.99671 7.07551 7.26423 7.44417 7.73734 7.90204 8.06068 8.48827 9.09914 9.66150 11.16159 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.086119 B = 0.003144 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.055206 B = 8904.386123 C = 9049.376119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.690 5.690 14 C 0.089 3.911 15 C -0.092 4.092 16 H 0.108 0.892 17 C -0.120 4.120 18 C -0.235 4.235 19 C -0.132 4.132 20 C -0.132 4.132 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.014 0.986 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.339 0.661 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -22.440 0.958 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.069 4.069 13 N -0.320 5.320 14 C -0.040 4.040 15 C -0.110 4.110 16 H 0.125 0.875 17 C -0.157 4.157 18 C -0.236 4.236 19 C -0.169 4.169 20 C -0.168 4.168 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.016 -22.319 0.270 22.878 hybrid contribution 0.759 0.956 0.929 1.534 sum 5.775 -21.363 1.200 22.162 Atomic orbital electron populations 1.69956 1.06049 1.26626 1.50969 1.25033 0.94848 0.99217 0.95435 0.86667 0.79586 0.83216 0.78579 1.20254 1.21299 1.20298 1.21263 0.92983 0.91252 1.50421 0.92831 1.19090 0.94028 0.91317 0.97157 1.21591 0.99088 0.93981 1.00062 1.21639 0.97877 0.93813 1.02019 1.22075 0.96243 0.88500 1.00100 1.60487 1.19957 1.01629 1.49966 1.21478 0.93703 0.88339 1.00489 1.22052 0.99061 0.88598 1.01291 0.87450 1.22790 1.01355 1.01403 0.90107 1.21588 1.01581 0.98559 1.01842 1.22635 1.00859 0.94604 0.98766 1.22609 0.89652 1.02229 1.02335 0.92992 0.96584 0.96745 0.93705 0.93440 0.91610 0.92742 0.95625 0.91288 0.84311 0.90865 0.95192 0.88681 0.88525 0.88747 0.88733 0.88712 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.12 -2.03 5.47 -26.73 -0.15 -2.17 16 12 C 0.06 0.87 5.69 -3.82 -0.02 0.85 16 13 N -0.69 -8.97 6.50 -113.78 -0.74 -9.71 16 14 C 0.09 1.01 5.97 -3.82 -0.02 0.98 16 15 C -0.09 -0.93 5.95 -90.63 -0.54 -1.47 16 16 H 0.11 1.08 8.13 -51.93 -0.42 0.66 16 17 C -0.12 -1.12 10.18 -26.74 -0.27 -1.39 16 18 C -0.24 -2.20 5.39 -154.53 -0.83 -3.03 16 19 C -0.13 -1.03 10.53 -26.74 -0.28 -1.31 16 20 C -0.13 -1.06 10.53 -26.74 -0.28 -1.34 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.34 4.11 8.72 -39.29 -0.34 3.76 16 31 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 317.85 15.07 4.79 4.79 Total: -1.00 -30.57 317.85 -10.37 -40.94 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.05 Total: -1.36 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -3.09 Total: -24.86 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.00 Total: -36.54 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.57 -10.37 -40.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829290268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.833 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds