Wall clock time and date at job start Mon Mar 30 2020 02:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00008 * 2 1 4 4 H 1.48492 * 109.47412 * 240.00553 * 3 2 1 5 5 H 1.48498 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46851 * 120.00277 * 3 2 1 7 7 C 1.37878 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46891 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 H 1.09001 * 115.54826 * 330.72564 * 15 14 13 17 17 C 1.52997 * 117.50030 * 116.38831 * 15 14 13 18 18 C 1.52986 * 117.50165 * 185.01147 * 15 14 13 19 19 C 1.52994 * 138.59051 * 121.61791 * 18 15 14 20 20 C 1.52994 * 60.00003 * 229.10880 * 19 18 15 21 21 H 0.96999 * 120.00205 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 23 23 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 24 24 H 1.09001 * 109.47142 * 59.99807 * 10 9 7 25 25 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 26 26 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 27 27 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 28 28 H 1.08992 * 109.47056 * 59.99654 * 12 11 10 29 29 H 1.09004 * 109.47006 * 299.99770 * 12 11 10 30 30 H 1.00899 * 110.99484 * 303.95475 * 13 12 11 31 31 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 32 32 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 33 33 H 1.08999 * 117.50280 * 214.98289 * 17 15 14 34 34 H 1.08998 * 117.49777 * 0.02562 * 17 15 14 35 35 H 1.09005 * 117.49410 * 336.59725 * 19 18 15 36 36 H 1.08998 * 117.50139 * 121.61530 * 19 18 15 37 37 H 1.09005 * 117.50167 * 252.50706 * 20 19 18 38 38 H 1.09002 * 117.50231 * 107.49169 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 7 1.7401 -7.4222 0.0007 14 6 2.6646 -8.5638 -0.0005 15 6 1.8645 -9.8680 0.0015 16 1 0.8884 -9.8199 0.4841 17 6 2.0071 -10.7861 -1.2141 18 6 2.6476 -11.1769 0.1192 19 6 2.7182 -12.3925 1.0455 20 6 4.0007 -11.6614 0.6438 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6247 -2.5570 0.8897 24 1 2.8720 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 0.8533 -5.0451 -0.8896 27 1 0.8540 -5.0446 0.8904 28 1 3.1019 -6.0921 0.8889 29 1 3.1006 -6.0923 -0.8910 30 1 1.1045 -7.4720 0.7828 31 1 3.2912 -8.5229 -0.8914 32 1 3.2939 -8.5227 0.8886 33 1 1.1249 -11.3423 -1.5309 34 1 2.6711 -10.4612 -2.0150 35 1 2.3665 -12.2660 2.0695 36 1 2.5384 -13.3728 0.6042 37 1 4.6648 -12.1606 -0.0619 38 1 4.4928 -11.0539 1.4034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829290268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:31 Heat of formation + Delta-G solvation = 12.837457 kcal Electronic energy + Delta-G solvation = -14228.810558 eV Core-core repulsion = 11878.254077 eV Total energy + Delta-G solvation = -2350.556481 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.55635 -37.71072 -35.91356 -34.32544 -33.12184 -30.22258 -27.20995 -25.19599 -23.32712 -22.85158 -22.17124 -21.56214 -19.80930 -18.42662 -17.02175 -16.55357 -16.33244 -15.95686 -15.88450 -15.49909 -14.98339 -14.50814 -14.06368 -13.77901 -13.53815 -13.02907 -12.82907 -12.48693 -12.43080 -12.33074 -12.21640 -12.15435 -12.07077 -11.38320 -11.31850 -11.09650 -10.88297 -10.81169 -10.66609 -10.54965 -9.37053 -8.19728 -6.31489 1.39459 1.43096 1.51065 2.41035 2.64597 2.77482 3.12800 3.17639 3.52411 3.86108 3.97082 4.10717 4.20712 4.39179 4.47552 4.53221 4.60154 4.65376 4.70889 4.74751 4.81460 4.84922 4.89471 4.92295 4.97450 5.00210 5.23764 5.24529 5.26676 5.31280 5.35696 5.54905 5.78019 5.86856 6.06398 6.25828 6.44286 6.86006 7.37806 8.92077 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.086119 B = 0.003144 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.055206 B = 8904.386123 C = 9049.376119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.071 3.929 13 N -0.695 5.695 14 C 0.095 3.905 15 C -0.101 4.101 16 H 0.106 0.894 17 C -0.120 4.120 18 C -0.250 4.250 19 C -0.126 4.126 20 C -0.131 4.131 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.010 1.010 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.344 0.656 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.615 -23.096 1.141 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.058 4.058 13 N -0.326 5.326 14 C -0.034 4.034 15 C -0.120 4.120 16 H 0.124 0.876 17 C -0.157 4.157 18 C -0.250 4.250 19 C -0.162 4.162 20 C -0.168 4.168 21 H 0.073 0.927 22 H 0.007 0.993 23 H 0.008 0.992 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.393 -22.997 0.456 23.874 hybrid contribution 0.295 1.121 0.877 1.454 sum 6.689 -21.876 1.333 22.915 Atomic orbital electron populations 1.70096 1.07880 1.27870 1.51673 1.26033 0.95812 1.03520 0.94707 0.85477 0.78265 0.77928 0.79240 1.19100 1.20753 1.19083 1.21730 0.93589 0.92555 1.50600 0.92166 1.19022 0.94513 0.93277 0.94623 1.21401 0.97995 0.93672 1.00466 1.21466 0.98036 0.93301 1.01551 1.21848 0.95315 0.88133 1.00518 1.60433 1.20337 1.01440 1.50439 1.21437 0.93473 0.88148 1.00364 1.21970 0.99135 0.88476 1.02405 0.87600 1.22833 1.01719 1.01118 0.90033 1.21734 1.02842 0.98564 1.01875 1.22758 1.00256 0.94508 0.98728 1.22721 0.89563 1.02090 1.02397 0.92740 0.99255 0.99198 0.93097 0.93067 0.92605 0.92750 0.94936 0.91146 0.83730 0.91148 0.95050 0.87964 0.88499 0.88269 0.87579 0.87782 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.25 4.97 29.85 0.15 1.39 16 10 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 11 C -0.11 -3.67 5.47 30.59 0.17 -3.50 16 12 C 0.07 1.99 5.69 86.30 0.49 2.48 16 13 N -0.70 -17.28 6.50 -513.88 -3.34 -20.63 16 14 C 0.09 2.02 5.97 86.31 0.51 2.53 16 15 C -0.10 -1.94 5.95 -10.80 -0.06 -2.01 16 16 H 0.11 2.03 8.13 -2.39 -0.02 2.01 16 17 C -0.12 -2.09 10.18 30.59 0.31 -1.78 16 18 C -0.25 -4.28 5.39 -52.19 -0.28 -4.56 16 19 C -0.13 -1.71 10.53 30.59 0.32 -1.39 16 20 C -0.13 -1.87 10.53 30.59 0.32 -1.55 16 21 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 22 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 23 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.34 7.97 8.72 -89.69 -0.78 7.19 16 31 H 0.07 1.54 7.88 -2.39 -0.02 1.52 16 32 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.65 8.03 -2.39 -0.02 1.63 16 35 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -64.86 317.85 1.97 -62.89 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.22 Total: 12.67 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 2.78 Total: -43.91 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -3.06 Total: -78.69 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.86 1.97 -62.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829290268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.730 kcal (2) G-P(sol) polarization free energy of solvation -64.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds