Wall clock time and date at job start Mon Mar 30 2020 02:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99914 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99803 * 3 2 1 6 6 H 1.48500 * 109.47209 * 149.99768 * 3 2 1 7 7 C 1.37875 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47327 * 180.02562 * 12 11 10 14 14 C 1.46893 * 111.00197 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47105 * 179.97438 * 14 13 12 16 16 H 1.08996 * 115.54824 * 29.28306 * 15 14 13 17 17 C 1.53005 * 117.50007 * 243.60509 * 15 14 13 18 18 C 1.52995 * 59.99884 * 252.51466 * 17 15 14 19 19 C 1.52997 * 138.58464 * 130.89771 * 18 17 15 20 20 C 1.52998 * 138.58726 * 229.10572 * 18 17 15 21 21 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 23 23 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 26 26 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 27 27 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 28 28 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 29 29 H 1.08992 * 109.47534 * 59.99520 * 12 11 10 30 30 H 1.00904 * 110.99414 * 303.94866 * 13 12 11 31 31 H 1.08997 * 109.47397 * 299.99701 * 14 13 12 32 32 H 1.09007 * 109.47353 * 59.99777 * 14 13 12 33 33 H 1.09003 * 117.49828 * 0.02562 * 17 15 14 34 34 H 1.09000 * 117.49871 * 144.99733 * 17 15 14 35 35 H 1.09005 * 117.49632 * 238.37182 * 19 18 17 36 36 H 1.08998 * 117.50347 * 23.40024 * 19 18 17 37 37 H 1.08997 * 117.49788 * 336.60237 * 20 18 17 38 38 H 1.08996 * 117.49516 * 121.61694 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5514 -2.6366 0.0022 12 6 6.0614 -4.0791 0.0028 13 7 7.5305 -4.0792 0.0033 14 6 8.0569 -5.4505 0.0044 15 6 9.5864 -5.4097 0.0044 16 1 10.0334 -4.5394 0.4846 17 6 10.3087 -5.9950 -1.2109 18 6 10.3285 -6.7423 0.1240 19 6 10.0721 -8.1552 0.6520 20 6 11.3471 -7.4092 1.0506 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6805 -0.8889 24 1 3.6579 -3.1498 0.8925 25 1 3.6585 -3.1510 -0.8874 26 1 5.9148 -2.1236 -0.8882 27 1 5.9149 -2.1220 0.8918 28 1 5.6982 -4.5926 0.8930 29 1 5.6980 -4.5933 -0.8869 30 1 7.8923 -3.5533 -0.7781 31 1 7.7071 -5.9733 0.8946 32 1 7.7077 -5.9746 -0.8853 33 1 9.6942 -6.4088 -2.0105 34 1 11.2309 -5.5096 -1.5302 35 1 9.3010 -8.2759 1.4129 36 1 10.1716 -8.9814 -0.0520 37 1 12.2854 -7.7445 0.6088 38 1 11.4148 -7.0391 2.0736 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829290269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:34 Heat of formation + Delta-G solvation = 14.975492 kcal Electronic energy + Delta-G solvation = -14274.154733 eV Core-core repulsion = 11923.690964 eV Total energy + Delta-G solvation = -2350.463769 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56860 -37.72362 -35.91228 -34.36275 -33.21918 -30.57071 -27.30440 -25.05060 -23.31192 -22.70070 -22.06181 -21.56499 -19.82438 -18.85163 -17.22521 -16.39824 -16.30059 -16.02395 -15.84548 -15.21402 -14.96559 -14.70731 -14.31900 -13.96600 -13.64775 -13.22288 -12.89275 -12.49858 -12.36484 -12.29295 -12.12822 -12.08509 -11.74322 -11.39321 -11.34510 -11.25185 -10.87263 -10.82787 -10.76180 -10.67578 -9.40656 -8.29612 -6.33847 1.36163 1.38534 1.51252 2.36991 2.65363 2.76236 3.05739 3.14112 3.48697 3.91214 3.95626 4.08410 4.20148 4.35120 4.47200 4.50277 4.56897 4.63514 4.74481 4.74711 4.80591 4.82109 4.85602 4.92167 4.96678 4.99864 5.13900 5.19891 5.24736 5.26019 5.30521 5.57711 5.65614 5.68641 6.05404 6.29372 6.46831 6.74512 7.31045 8.87437 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.072993 B = 0.003351 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.504901 B = 8354.079596 C = 8549.499451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.536 4.536 8 H 0.029 0.971 9 C -0.012 4.012 10 C -0.096 4.096 11 C -0.106 4.106 12 C 0.067 3.933 13 N -0.693 5.693 14 C 0.094 3.906 15 C -0.102 4.102 16 H 0.108 0.892 17 C -0.123 4.123 18 C -0.248 4.248 19 C -0.132 4.132 20 C -0.126 4.126 21 H 0.266 0.734 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.347 0.653 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.363 -12.801 -0.880 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.574 4.574 8 H 0.047 0.953 9 C -0.050 4.050 10 C -0.134 4.134 11 C -0.144 4.144 12 C -0.062 4.062 13 N -0.325 5.325 14 C -0.035 4.035 15 C -0.121 4.121 16 H 0.126 0.874 17 C -0.160 4.160 18 C -0.249 4.249 19 C -0.169 4.169 20 C -0.163 4.163 21 H 0.075 0.925 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.165 0.835 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 24.264 -12.640 -0.193 27.360 hybrid contribution -0.701 0.396 -0.859 1.178 sum 23.563 -12.244 -1.053 26.575 Atomic orbital electron populations 1.70082 1.08380 1.28195 1.52818 1.26097 0.95688 1.03785 0.94085 0.85584 0.79457 0.77874 0.79283 1.19001 1.20936 1.16950 1.21580 0.92461 0.93044 1.50296 0.95251 1.19546 0.93579 0.95423 0.96443 1.21297 0.94720 0.96920 1.00452 1.21491 0.94291 0.96298 1.02330 1.21861 0.87187 0.96757 1.00368 1.60427 1.07294 1.14259 1.50507 1.21418 0.92447 0.89367 1.00254 1.22008 0.92952 0.94997 1.02104 0.87377 1.22905 1.02342 1.00833 0.89895 1.21686 1.07042 0.94343 1.01824 1.22723 0.99723 0.92041 1.02422 1.22752 0.93737 1.01025 0.98766 0.92498 0.96325 0.96297 0.93546 0.93483 0.91740 0.91774 0.91538 0.95114 0.83463 0.91566 0.94944 0.88454 0.87650 0.88634 0.87797 0.87531 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 2 C 0.00 -0.02 5.47 84.65 0.46 0.45 16 3 Si 0.96 45.24 27.47 68.60 1.88 47.12 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 7 C -0.54 -31.98 9.66 25.60 0.25 -31.73 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.79 5.15 30.60 0.16 -3.63 16 11 C -0.11 -3.27 5.47 30.59 0.17 -3.10 16 12 C 0.07 1.77 5.69 86.30 0.49 2.26 16 13 N -0.69 -15.85 6.50 -513.90 -3.34 -19.19 16 14 C 0.09 1.91 5.97 86.31 0.52 2.42 16 15 C -0.10 -1.83 5.95 -10.79 -0.06 -1.90 16 16 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 17 C -0.12 -1.87 10.18 30.59 0.31 -1.56 16 18 C -0.25 -4.09 5.39 -52.19 -0.28 -4.37 16 19 C -0.13 -1.87 10.53 30.59 0.32 -1.55 16 20 C -0.13 -1.70 10.53 30.60 0.32 -1.37 16 21 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 22 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 23 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.35 7.15 8.73 -89.69 -0.78 6.37 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 0.65 7.87 -2.38 -0.02 0.63 16 33 H 0.10 1.41 8.03 -2.39 -0.02 1.39 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -66.33 314.26 1.78 -64.56 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.16 Total: 13.08 kcal Atomic # 6 Polarization: -47.34 SS G_CDS: 2.77 Total: -44.57 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -3.04 Total: -80.18 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.12 kcal Total: -66.33 1.78 -64.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829290269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.531 kcal (2) G-P(sol) polarization free energy of solvation -66.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds