Wall clock time and date at job start Mon Mar 30 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00073 * 2 1 4 4 H 1.48503 * 109.46695 * 239.99502 * 3 2 1 5 5 H 1.48504 * 109.46963 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46969 * 119.99748 * 3 2 1 7 7 C 1.37874 * 119.99612 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84722 * 180.02562 * 7 2 1 9 9 C 1.53243 * 108.48296 * 231.36946 * 8 7 2 10 10 C 1.52955 * 109.40139 * 305.26923 * 9 8 7 11 11 H 1.09007 * 109.41277 * 303.63482 * 10 9 8 12 12 N 1.46895 * 109.41666 * 183.77628 * 10 9 8 13 13 C 1.46850 * 111.00333 * 59.85525 * 12 10 9 14 14 C 1.53036 * 109.52384 * 174.16360 * 13 12 10 15 15 C 1.53120 * 109.27700 * 59.18090 * 14 13 12 16 16 C 1.53120 * 109.15972 * 302.34018 * 15 14 13 17 17 C 1.46850 * 110.99945 * 295.64457 * 12 10 9 18 18 C 1.52958 * 109.76280 * 63.69925 * 10 9 8 19 19 C 1.51268 * 120.85336 * 0.02562 * 7 2 1 20 20 H 0.97003 * 119.99787 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.62514 * 351.03962 * 8 7 2 22 22 H 1.08991 * 109.62572 * 111.42381 * 8 7 2 23 23 H 1.08998 * 109.42904 * 185.32278 * 9 8 7 24 24 H 1.09008 * 109.54115 * 65.27945 * 9 8 7 25 25 H 1.08995 * 109.45831 * 54.14149 * 13 12 10 26 26 H 1.08998 * 109.45719 * 294.17998 * 13 12 10 27 27 H 1.08998 * 109.49982 * 179.12006 * 14 13 12 28 28 H 1.08997 * 109.50239 * 299.19542 * 14 13 12 29 29 H 1.08996 * 109.52458 * 62.25353 * 15 14 13 30 30 H 1.09005 * 109.51651 * 182.44129 * 15 14 13 31 31 H 1.09000 * 109.49976 * 177.59581 * 16 15 14 32 32 H 1.08997 * 109.50809 * 297.71813 * 16 15 14 33 33 H 1.09007 * 109.46080 * 65.82377 * 17 12 10 34 34 H 1.09001 * 109.45527 * 305.85274 * 17 12 10 35 35 H 1.09005 * 109.47955 * 56.34810 * 18 10 9 36 36 H 1.08992 * 109.48366 * 176.38904 * 18 10 9 37 37 H 1.09002 * 109.62748 * 8.95293 * 19 7 2 38 38 H 1.09002 * 109.62647 * 248.38510 * 19 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2165 0.0011 9 6 3.9897 -2.1313 -1.1339 10 6 3.3402 -3.5076 -0.9812 11 1 3.5738 -3.9112 0.0041 12 7 3.8619 -4.4112 -2.0152 13 6 5.3184 -4.5586 -1.8992 14 6 5.8064 -5.6142 -2.8940 15 6 5.4297 -5.1829 -4.3141 16 6 3.9130 -4.9897 -4.3950 17 6 3.4798 -3.9522 -3.3567 18 6 1.8232 -3.3832 -1.1329 19 6 1.2676 -2.5152 0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 3.8982 -0.2080 -0.1589 22 1 3.8771 -1.5967 0.9570 23 1 5.0739 -2.2340 -1.0890 24 1 3.7046 -1.6991 -2.0932 25 1 5.5723 -4.8694 -0.8859 26 1 5.7983 -3.6046 -2.1173 27 1 6.8893 -5.7121 -2.8185 28 1 5.3378 -6.5719 -2.6674 29 1 5.9299 -4.2449 -4.5547 30 1 5.7371 -5.9527 -5.0220 31 1 3.6432 -4.6414 -5.3920 32 1 3.4140 -5.9373 -4.1925 33 1 3.9685 -3.0010 -3.5680 34 1 2.3984 -3.8228 -3.4019 35 1 1.5905 -2.9208 -2.0922 36 1 1.3709 -4.3738 -1.0874 37 1 0.2036 -2.3409 -0.1597 38 1 1.4192 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885608836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:33 Heat of formation + Delta-G solvation = -24.571693 kcal Electronic energy + Delta-G solvation = -16323.774926 eV Core-core repulsion = 13971.596263 eV Total energy + Delta-G solvation = -2352.178664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21572 -36.11590 -33.09000 -31.01298 -30.70347 -29.51903 -26.90253 -23.85411 -23.00315 -21.52906 -21.07597 -19.75945 -18.38102 -16.05125 -15.74847 -14.52321 -14.47112 -14.22378 -13.69932 -13.43553 -13.29918 -12.91942 -12.56507 -12.11505 -12.04145 -11.84555 -11.40923 -11.11381 -10.83832 -10.74585 -10.59215 -10.44621 -10.31272 -10.16961 -9.91116 -9.71542 -9.58562 -8.86240 -8.63087 -8.44740 -7.62035 -6.07466 -3.97597 3.28876 3.35621 3.37054 4.39880 4.41202 5.00304 5.05865 5.10778 5.19677 5.45706 5.66609 5.75017 5.78712 5.81106 5.88781 6.03570 6.04709 6.07206 6.18546 6.28696 6.31858 6.38264 6.52525 6.56227 6.69548 6.83813 6.90090 7.00744 7.04281 7.23356 7.40188 7.61077 7.66181 7.72651 7.87705 7.91225 8.43444 9.00357 9.57444 11.02341 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.042845 B = 0.007764 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.361654 B = 3605.541585 C = 3763.182139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.487 4.487 8 C -0.007 4.007 9 C -0.137 4.137 10 C 0.098 3.902 11 H 0.070 0.930 12 N -0.536 5.536 13 C 0.052 3.948 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.116 4.116 17 C 0.050 3.950 18 C -0.100 4.100 19 C 0.010 3.990 20 H 0.264 0.736 21 H 0.021 0.979 22 H 0.017 0.983 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.057 0.943 38 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 -7.923 -6.303 13.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.506 4.506 8 C -0.045 4.045 9 C -0.176 4.176 10 C -0.010 4.010 11 H 0.088 0.912 12 N -0.260 5.260 13 C -0.076 4.076 14 C -0.153 4.153 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.078 4.078 18 C -0.138 4.138 19 C -0.028 4.028 20 H 0.074 0.926 21 H 0.039 0.961 22 H 0.035 0.965 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 8.472 -8.279 -6.233 13.385 hybrid contribution 0.887 1.843 -0.176 2.053 sum 9.359 -6.436 -6.409 13.042 Atomic orbital electron populations 1.69827 1.06083 1.26922 1.50036 1.24833 0.94722 0.98431 0.94724 0.86682 0.79398 0.83242 0.78868 1.20184 1.21843 1.20099 1.20055 0.89246 0.91643 1.49657 1.19570 0.96832 0.94397 0.93722 1.22185 0.96790 0.97610 1.01007 1.21613 0.96233 0.89716 0.93411 0.91166 1.62313 1.10531 1.49650 1.03479 1.22040 0.89054 0.97413 0.99077 1.21576 0.99578 0.99432 0.94699 1.21563 0.96592 1.00734 0.96842 1.21599 0.95572 1.00116 0.98129 1.22115 1.01370 0.95659 0.88654 1.21707 0.92634 0.98236 1.01205 1.19372 0.98565 0.92780 0.92076 0.92595 0.96091 0.96461 0.95005 0.93051 0.91359 0.94884 0.92291 0.91451 0.92591 0.92460 0.92184 0.91458 0.95003 0.90114 0.93224 0.94425 0.92423 0.97823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 12.73 55.43 0.71 -25.25 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.67 26.80 -169.99 -4.56 17.11 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.49 -13.02 5.51 -98.92 -0.55 -13.56 16 8 C -0.01 -0.17 5.60 -27.48 -0.15 -0.32 16 9 C -0.14 -2.84 4.53 -26.63 -0.12 -2.97 16 10 C 0.10 1.93 2.19 -67.76 -0.15 1.78 16 11 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 12 N -0.54 -9.15 4.68 -226.74 -1.06 -10.21 16 13 C 0.05 0.78 4.89 -3.83 -0.02 0.76 16 14 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 15 C -0.12 -1.42 6.00 -26.61 -0.16 -1.58 16 16 C -0.12 -1.52 6.09 -26.65 -0.16 -1.68 16 17 C 0.05 0.81 4.68 -3.83 -0.02 0.79 16 18 C -0.10 -2.16 4.73 -26.65 -0.13 -2.29 16 19 C 0.01 0.25 5.97 -27.50 -0.16 0.09 16 20 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 21 H 0.02 0.49 5.17 -51.93 -0.27 0.22 16 22 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.03 0.60 6.33 -51.93 -0.33 0.27 16 24 H 0.05 1.12 6.82 -51.92 -0.35 0.76 16 25 H 0.07 1.00 8.12 -51.93 -0.42 0.57 16 26 H 0.03 0.51 6.54 -51.93 -0.34 0.17 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.54 6.79 -51.92 -0.35 0.19 16 34 H 0.08 1.39 5.98 -51.93 -0.31 1.08 16 35 H 0.05 1.11 6.43 -51.93 -0.33 0.78 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.59 7.07 -51.93 -0.37 1.23 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 LS Contribution 276.27 15.07 4.16 4.16 Total: -1.00 -27.76 276.27 -9.06 -36.82 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -6.44 Total: -4.07 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.88 Total: -18.56 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.36 Total: -35.46 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.56 Total: 17.11 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.76 -9.06 -36.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885608836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.250 kcal (2) G-P(sol) polarization free energy of solvation -27.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds