Wall clock time and date at job start Mon Mar 30 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00073 * 2 1 4 4 H 1.48503 * 109.46695 * 239.99502 * 3 2 1 5 5 H 1.48504 * 109.46963 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46969 * 119.99748 * 3 2 1 7 7 C 1.37874 * 119.99612 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84722 * 180.02562 * 7 2 1 9 9 C 1.53243 * 108.48296 * 231.36946 * 8 7 2 10 10 C 1.52955 * 109.40139 * 305.26923 * 9 8 7 11 11 H 1.09007 * 109.41277 * 303.63482 * 10 9 8 12 12 N 1.46895 * 109.41666 * 183.77628 * 10 9 8 13 13 C 1.46850 * 111.00333 * 59.85525 * 12 10 9 14 14 C 1.53036 * 109.52384 * 174.16360 * 13 12 10 15 15 C 1.53120 * 109.27700 * 59.18090 * 14 13 12 16 16 C 1.53120 * 109.15972 * 302.34018 * 15 14 13 17 17 C 1.46850 * 110.99945 * 295.64457 * 12 10 9 18 18 C 1.52958 * 109.76280 * 63.69925 * 10 9 8 19 19 C 1.51268 * 120.85336 * 0.02562 * 7 2 1 20 20 H 0.97003 * 119.99787 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.62514 * 351.03962 * 8 7 2 22 22 H 1.08991 * 109.62572 * 111.42381 * 8 7 2 23 23 H 1.08998 * 109.42904 * 185.32278 * 9 8 7 24 24 H 1.09008 * 109.54115 * 65.27945 * 9 8 7 25 25 H 1.08995 * 109.45831 * 54.14149 * 13 12 10 26 26 H 1.08998 * 109.45719 * 294.17998 * 13 12 10 27 27 H 1.08998 * 109.49982 * 179.12006 * 14 13 12 28 28 H 1.08997 * 109.50239 * 299.19542 * 14 13 12 29 29 H 1.08996 * 109.52458 * 62.25353 * 15 14 13 30 30 H 1.09005 * 109.51651 * 182.44129 * 15 14 13 31 31 H 1.09000 * 109.49976 * 177.59581 * 16 15 14 32 32 H 1.08997 * 109.50809 * 297.71813 * 16 15 14 33 33 H 1.09007 * 109.46080 * 65.82377 * 17 12 10 34 34 H 1.09001 * 109.45527 * 305.85274 * 17 12 10 35 35 H 1.09005 * 109.47955 * 56.34810 * 18 10 9 36 36 H 1.08992 * 109.48366 * 176.38904 * 18 10 9 37 37 H 1.09002 * 109.62748 * 8.95293 * 19 7 2 38 38 H 1.09002 * 109.62647 * 248.38510 * 19 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2165 0.0011 9 6 3.9897 -2.1313 -1.1339 10 6 3.3402 -3.5076 -0.9812 11 1 3.5738 -3.9112 0.0041 12 7 3.8619 -4.4112 -2.0152 13 6 5.3184 -4.5586 -1.8992 14 6 5.8064 -5.6142 -2.8940 15 6 5.4297 -5.1829 -4.3141 16 6 3.9130 -4.9897 -4.3950 17 6 3.4798 -3.9522 -3.3567 18 6 1.8232 -3.3832 -1.1329 19 6 1.2676 -2.5152 0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 3.8982 -0.2080 -0.1589 22 1 3.8771 -1.5967 0.9570 23 1 5.0739 -2.2340 -1.0890 24 1 3.7046 -1.6991 -2.0932 25 1 5.5723 -4.8694 -0.8859 26 1 5.7983 -3.6046 -2.1173 27 1 6.8893 -5.7121 -2.8185 28 1 5.3378 -6.5719 -2.6674 29 1 5.9299 -4.2449 -4.5547 30 1 5.7371 -5.9527 -5.0220 31 1 3.6432 -4.6414 -5.3920 32 1 3.4140 -5.9373 -4.1925 33 1 3.9685 -3.0010 -3.5680 34 1 2.3984 -3.8228 -3.4019 35 1 1.5905 -2.9208 -2.0922 36 1 1.3709 -4.3738 -1.0874 37 1 0.2036 -2.3409 -0.1597 38 1 1.4192 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885608836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:33 Heat of formation + Delta-G solvation = -40.794113 kcal Electronic energy + Delta-G solvation = -16324.478383 eV Core-core repulsion = 13971.596263 eV Total energy + Delta-G solvation = -2352.882121 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60860 -37.68730 -34.78412 -32.70925 -31.99394 -31.22747 -28.65055 -25.27348 -24.29397 -23.13101 -22.91874 -21.13642 -19.83870 -17.98653 -17.10953 -16.45948 -15.76068 -15.42071 -15.11249 -15.00268 -14.71707 -14.51675 -14.08657 -13.90101 -13.70293 -13.26180 -12.95108 -12.76243 -12.61161 -12.25659 -12.15673 -11.92881 -11.71504 -11.60238 -11.47580 -11.21682 -11.11599 -10.73365 -10.56217 -10.51940 -9.03653 -8.18759 -6.12263 1.35587 1.36118 1.44739 2.37695 3.00897 3.16235 3.95196 3.96802 4.07479 4.14192 4.25903 4.42408 4.49210 4.55474 4.63928 4.72025 4.74996 4.88634 4.93885 5.01650 5.02755 5.08033 5.10293 5.15571 5.18161 5.25048 5.27462 5.30307 5.47870 5.53529 5.55987 5.61622 5.76258 5.82008 6.27175 6.36130 6.39942 6.94053 7.45083 8.92481 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.042845 B = 0.007764 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.361654 B = 3605.541585 C = 3763.182139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.020 3.980 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.499 4.499 8 C -0.010 4.010 9 C -0.127 4.127 10 C 0.106 3.894 11 H 0.068 0.932 12 N -0.536 5.536 13 C 0.048 3.952 14 C -0.110 4.110 15 C -0.118 4.118 16 C -0.111 4.111 17 C 0.048 3.952 18 C -0.087 4.087 19 C 0.007 3.993 20 H 0.263 0.737 21 H 0.022 0.978 22 H 0.023 0.977 23 H 0.055 0.945 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.029 0.971 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.025 0.975 38 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.285 -8.807 -7.242 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.178 4.178 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.518 4.518 8 C -0.049 4.049 9 C -0.166 4.166 10 C -0.002 4.002 11 H 0.086 0.914 12 N -0.260 5.260 13 C -0.080 4.080 14 C -0.147 4.147 15 C -0.155 4.155 16 C -0.149 4.149 17 C -0.080 4.080 18 C -0.125 4.125 19 C -0.031 4.031 20 H 0.072 0.928 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 10.927 -9.177 -7.178 15.972 hybrid contribution 0.108 2.052 0.137 2.059 sum 11.035 -7.125 -7.040 14.903 Atomic orbital electron populations 1.69967 1.07580 1.27463 1.52146 1.25606 0.95391 1.01697 0.95070 0.85812 0.78353 0.79609 0.79310 1.19391 1.21867 1.19156 1.20665 0.91189 0.91941 1.48030 1.19607 0.94760 0.95331 0.95158 1.22061 0.98253 0.97330 0.99005 1.21380 0.94540 0.89870 0.94410 0.91431 1.62298 1.12307 1.48266 1.03116 1.22178 0.87204 0.98225 1.00355 1.21564 1.00894 0.98278 0.94011 1.21572 0.95279 1.01517 0.97154 1.21577 0.96763 0.98961 0.97614 1.22151 1.00270 0.96440 0.89116 1.21493 0.94472 0.97699 0.98875 1.19333 0.96892 0.93552 0.93304 0.92812 0.95985 0.95883 0.92599 0.94254 0.91032 0.95323 0.90053 0.91386 0.92642 0.90159 0.90787 0.91392 0.96041 0.91909 0.94344 0.93425 0.95670 0.98189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 12.73 21.45 0.27 -55.62 16 2 C 0.02 1.14 5.46 84.65 0.46 1.61 16 3 Si 0.94 44.52 26.80 68.60 1.84 46.36 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.50 -26.91 5.51 -16.17 -0.09 -27.00 16 8 C -0.01 -0.48 5.60 30.11 0.17 -0.32 16 9 C -0.13 -5.10 4.53 30.66 0.14 -4.97 16 10 C 0.11 4.08 2.19 44.89 0.10 4.17 16 11 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 12 N -0.54 -17.31 4.68 -871.28 -4.08 -21.39 16 13 C 0.05 1.29 4.89 86.32 0.42 1.72 16 14 C -0.11 -2.29 6.09 30.65 0.19 -2.10 16 15 C -0.12 -2.35 6.00 30.67 0.18 -2.17 16 16 C -0.11 -2.61 6.09 30.65 0.19 -2.43 16 17 C 0.05 1.49 4.68 86.32 0.40 1.89 16 18 C -0.09 -3.81 4.73 30.65 0.15 -3.66 16 19 C 0.01 0.37 5.97 30.10 0.18 0.55 16 20 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 21 H 0.02 1.00 5.17 -2.39 -0.01 0.99 16 22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.98 6.33 -2.39 -0.02 1.96 16 24 H 0.04 1.66 6.82 -2.38 -0.02 1.65 16 25 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 26 H 0.03 0.80 6.54 -2.39 -0.02 0.79 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.02 0.70 6.79 -2.38 -0.02 0.69 16 34 H 0.06 2.14 5.98 -2.39 -0.01 2.12 16 35 H 0.04 1.74 6.43 -2.38 -0.02 1.73 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.02 1.43 7.07 -2.39 -0.02 1.42 16 38 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -59.58 276.27 1.54 -58.04 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.01 Total: 5.31 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 2.49 Total: -32.70 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -3.80 Total: -77.01 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.84 Total: 46.36 kcal Total: -59.58 1.54 -58.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885608836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.250 kcal (2) G-P(sol) polarization free energy of solvation -59.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds