Wall clock time and date at job start Mon Mar 30 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48502 * 109.46693 * 269.99935 * 3 2 1 5 5 H 1.48495 * 109.47317 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47236 * 150.00338 * 3 2 1 7 7 C 1.37867 * 120.00018 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85172 * 359.97438 * 7 2 1 9 9 C 1.53232 * 108.69741 * 231.22989 * 8 7 2 10 10 C 1.53005 * 109.37855 * 305.66359 * 9 8 7 11 11 H 1.09005 * 109.26030 * 303.19288 * 10 9 8 12 12 N 1.46902 * 109.33712 * 183.47542 * 10 9 8 13 13 C 1.46904 * 110.99874 * 84.48654 * 12 10 9 14 14 C 1.54270 * 110.03195 * 272.90530 * 13 12 10 15 15 C 1.54965 * 104.15798 * 217.14015 * 14 13 12 16 16 C 1.54888 * 102.78063 * 37.89037 * 15 14 13 17 17 C 1.53882 * 110.03129 * 155.69164 * 13 12 10 18 18 C 1.52953 * 109.98742 * 63.31008 * 10 9 8 19 19 C 1.51271 * 120.84882 * 179.97438 * 7 2 1 20 20 H 0.97001 * 120.00180 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.62532 * 351.04191 * 8 7 2 22 22 H 1.09001 * 109.62715 * 111.41878 * 8 7 2 23 23 H 1.09003 * 109.48094 * 65.44635 * 9 8 7 24 24 H 1.08998 * 109.48540 * 185.48862 * 9 8 7 25 25 H 1.00898 * 111.00053 * 320.53358 * 12 10 9 26 26 H 1.08998 * 110.01776 * 34.29839 * 13 12 10 27 27 H 1.09001 * 110.48540 * 335.78338 * 14 13 12 28 28 H 1.08997 * 110.48222 * 98.43199 * 14 13 12 29 29 H 1.08997 * 110.71967 * 279.57290 * 15 14 13 30 30 H 1.09002 * 110.92059 * 156.29904 * 15 14 13 31 31 H 1.08992 * 110.48618 * 203.40569 * 16 15 14 32 32 H 1.09001 * 110.60079 * 80.81746 * 16 15 14 33 33 H 1.09000 * 110.02917 * 238.57048 * 17 13 12 34 34 H 1.09003 * 110.02911 * 359.97438 * 17 13 12 35 35 H 1.08997 * 109.48509 * 176.50033 * 18 10 9 36 36 H 1.09004 * 109.49182 * 56.46944 * 18 10 9 37 37 H 1.08996 * 109.62720 * 248.38384 * 19 7 2 38 38 H 1.08998 * 109.62860 * 8.76774 * 19 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0017 9 6 1.8227 -3.3861 1.1337 10 6 3.3406 -3.5064 0.9842 11 1 3.5739 -3.9122 -0.0003 12 7 3.8615 -4.4085 2.0200 13 6 3.7589 -5.8114 1.5965 14 6 2.3735 -6.3768 1.9719 15 6 2.6628 -7.8396 2.3937 16 6 4.0113 -7.7190 3.1461 17 6 4.7999 -6.6646 2.3423 18 6 3.9915 -2.1304 1.1341 19 6 3.5170 -1.2164 0.0000 20 1 -0.4850 0.8400 0.0004 21 1 0.2037 -2.3408 0.1619 22 1 1.4164 -3.0181 -0.9538 23 1 1.5900 -2.9257 2.0940 24 1 1.3699 -4.3764 1.0859 25 1 3.3889 -4.2607 2.8991 26 1 3.9146 -5.8886 0.5204 27 1 1.9460 -5.8175 2.8041 28 1 1.7054 -6.3521 1.1111 29 1 2.7650 -8.4804 1.5180 30 1 1.8830 -8.2151 3.0563 31 1 4.5372 -8.6737 3.1417 32 1 3.8508 -7.3776 4.1687 33 1 5.4603 -7.1565 1.6281 34 1 5.3815 -6.0376 3.0181 35 1 5.0755 -2.2340 1.0883 36 1 3.7080 -1.6965 2.0931 37 1 3.8771 -1.6006 -0.9543 38 1 3.8982 -0.2072 0.1556 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885608928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:12 Heat of formation + Delta-G solvation = -31.942076 kcal Electronic energy + Delta-G solvation = -15945.050648 eV Core-core repulsion = 13592.552381 eV Total energy + Delta-G solvation = -2352.498267 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.76558 -36.57381 -33.35668 -31.23779 -29.55172 -28.49686 -27.65507 -25.29449 -21.62184 -21.35231 -20.56127 -19.97796 -18.92951 -16.31265 -15.80275 -15.29053 -14.37845 -14.20866 -13.41320 -13.23133 -12.96023 -12.82549 -12.40439 -12.09303 -11.96336 -11.59779 -11.19273 -11.00513 -10.86719 -10.73003 -10.67299 -10.62037 -10.42853 -10.35588 -10.00619 -9.84225 -9.38796 -8.87860 -8.66248 -8.41473 -7.69291 -6.05425 -3.95577 3.30209 3.38305 3.39743 4.42220 4.58199 4.75617 4.80672 5.07869 5.23567 5.52978 5.56060 5.66290 5.71571 5.77480 5.87994 5.95527 6.00139 6.07809 6.15053 6.30110 6.36793 6.39592 6.41595 6.60598 6.76128 6.85795 6.91019 7.09500 7.10914 7.19717 7.49340 7.68839 7.74879 7.77622 7.86202 8.00115 8.45047 9.02324 9.59599 11.04285 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054802 B = 0.006619 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.803584 B = 4229.463119 C = 4576.806268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.483 4.483 8 C 0.012 3.988 9 C -0.137 4.137 10 C 0.099 3.901 11 H 0.062 0.938 12 N -0.686 5.686 13 C 0.085 3.915 14 C -0.151 4.151 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.091 4.091 19 C -0.022 4.022 20 H 0.263 0.737 21 H 0.053 0.947 22 H 0.000 1.000 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.336 0.664 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.014 0.986 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.223 -11.536 4.622 13.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.502 4.502 8 C -0.026 4.026 9 C -0.176 4.176 10 C -0.010 4.010 11 H 0.080 0.920 12 N -0.315 5.315 13 C -0.026 4.026 14 C -0.190 4.190 15 C -0.162 4.162 16 C -0.163 4.163 17 C -0.154 4.154 18 C -0.130 4.130 19 C -0.060 4.060 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.019 0.981 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.154 0.846 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.738 -11.337 4.418 13.908 hybrid contribution -0.682 0.771 0.094 1.033 sum 6.056 -10.566 4.512 12.988 Atomic orbital electron populations 1.69846 1.06158 1.26772 1.50412 1.24857 0.94714 0.98572 0.94740 0.86680 0.80037 0.83324 0.78441 1.20493 1.21747 1.18893 1.20075 0.89503 0.91415 1.49254 1.19319 0.98494 0.92984 0.91788 1.22373 0.95439 0.98190 1.01612 1.21528 0.93525 0.92763 0.93150 0.91985 1.60884 1.61330 1.02933 1.06308 1.22224 0.92678 0.88613 0.99055 1.23228 0.98541 0.96012 1.01229 1.22471 0.97075 0.96969 0.99709 1.22363 0.96094 0.98705 0.99105 1.22200 0.97707 0.96506 0.99028 1.21478 0.96945 0.94387 1.00176 1.19831 0.96586 0.95643 0.93988 0.92730 0.92798 0.98137 0.93420 0.94926 0.84638 0.90792 0.91477 0.91574 0.91807 0.92084 0.92228 0.91922 0.92209 0.90786 0.94463 0.93385 0.96728 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 12.73 55.43 0.71 -25.45 16 2 C 0.07 2.03 5.46 -17.82 -0.10 1.94 16 3 Si 0.89 21.42 27.53 -169.99 -4.68 16.74 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.17 6.11 56.52 0.35 -5.82 16 7 C -0.48 -12.95 5.52 -98.92 -0.55 -13.49 16 8 C 0.01 0.31 5.96 -27.48 -0.16 0.14 16 9 C -0.14 -2.90 5.04 -26.61 -0.13 -3.03 16 10 C 0.10 1.93 2.36 -67.73 -0.16 1.77 16 11 H 0.06 1.26 7.44 -51.93 -0.39 0.87 16 12 N -0.69 -11.23 5.95 -98.58 -0.59 -11.81 16 13 C 0.09 1.21 3.22 -66.59 -0.21 0.99 16 14 C -0.15 -2.00 4.81 -25.03 -0.12 -2.13 16 15 C -0.12 -1.37 6.91 -24.70 -0.17 -1.54 16 16 C -0.12 -1.32 6.83 -25.07 -0.17 -1.49 16 17 C -0.12 -1.41 6.60 -25.61 -0.17 -1.57 16 18 C -0.09 -1.93 5.55 -26.65 -0.15 -2.07 16 19 C -0.02 -0.54 5.59 -27.50 -0.15 -0.69 16 20 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 21 H 0.05 1.50 7.07 -51.93 -0.37 1.13 16 22 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.03 0.63 5.68 -51.93 -0.29 0.33 16 25 H 0.34 5.37 7.87 -39.29 -0.31 5.06 16 26 H 0.07 1.12 7.45 -51.93 -0.39 0.73 16 27 H 0.07 0.93 7.57 -51.93 -0.39 0.54 16 28 H 0.07 0.93 7.35 -51.93 -0.38 0.55 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.03 0.80 4.59 -51.93 -0.24 0.56 16 LS Contribution 283.05 15.07 4.27 4.27 Total: -1.00 -27.64 283.05 -9.13 -36.77 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.59 Total: 0.66 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.25 Total: -21.17 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.12 Total: -37.26 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.68 Total: 16.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.64 -9.13 -36.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885608928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.831 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds