Wall clock time and date at job start Mon Mar 30 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48502 * 109.46693 * 269.99935 * 3 2 1 5 5 H 1.48495 * 109.47317 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47236 * 150.00338 * 3 2 1 7 7 C 1.37867 * 120.00018 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85172 * 359.97438 * 7 2 1 9 9 C 1.53232 * 108.69741 * 231.22989 * 8 7 2 10 10 C 1.53005 * 109.37855 * 305.66359 * 9 8 7 11 11 H 1.09005 * 109.26030 * 303.19288 * 10 9 8 12 12 N 1.46902 * 109.33712 * 183.47542 * 10 9 8 13 13 C 1.46904 * 110.99874 * 84.48654 * 12 10 9 14 14 C 1.54270 * 110.03195 * 272.90530 * 13 12 10 15 15 C 1.54965 * 104.15798 * 217.14015 * 14 13 12 16 16 C 1.54888 * 102.78063 * 37.89037 * 15 14 13 17 17 C 1.53882 * 110.03129 * 155.69164 * 13 12 10 18 18 C 1.52953 * 109.98742 * 63.31008 * 10 9 8 19 19 C 1.51271 * 120.84882 * 179.97438 * 7 2 1 20 20 H 0.97001 * 120.00180 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.62532 * 351.04191 * 8 7 2 22 22 H 1.09001 * 109.62715 * 111.41878 * 8 7 2 23 23 H 1.09003 * 109.48094 * 65.44635 * 9 8 7 24 24 H 1.08998 * 109.48540 * 185.48862 * 9 8 7 25 25 H 1.00898 * 111.00053 * 320.53358 * 12 10 9 26 26 H 1.08998 * 110.01776 * 34.29839 * 13 12 10 27 27 H 1.09001 * 110.48540 * 335.78338 * 14 13 12 28 28 H 1.08997 * 110.48222 * 98.43199 * 14 13 12 29 29 H 1.08997 * 110.71967 * 279.57290 * 15 14 13 30 30 H 1.09002 * 110.92059 * 156.29904 * 15 14 13 31 31 H 1.08992 * 110.48618 * 203.40569 * 16 15 14 32 32 H 1.09001 * 110.60079 * 80.81746 * 16 15 14 33 33 H 1.09000 * 110.02917 * 238.57048 * 17 13 12 34 34 H 1.09003 * 110.02911 * 359.97438 * 17 13 12 35 35 H 1.08997 * 109.48509 * 176.50033 * 18 10 9 36 36 H 1.09004 * 109.49182 * 56.46944 * 18 10 9 37 37 H 1.08996 * 109.62720 * 248.38384 * 19 7 2 38 38 H 1.08998 * 109.62860 * 8.76774 * 19 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0017 9 6 1.8227 -3.3861 1.1337 10 6 3.3406 -3.5064 0.9842 11 1 3.5739 -3.9122 -0.0003 12 7 3.8615 -4.4085 2.0200 13 6 3.7589 -5.8114 1.5965 14 6 2.3735 -6.3768 1.9719 15 6 2.6628 -7.8396 2.3937 16 6 4.0113 -7.7190 3.1461 17 6 4.7999 -6.6646 2.3423 18 6 3.9915 -2.1304 1.1341 19 6 3.5170 -1.2164 0.0000 20 1 -0.4850 0.8400 0.0004 21 1 0.2037 -2.3408 0.1619 22 1 1.4164 -3.0181 -0.9538 23 1 1.5900 -2.9257 2.0940 24 1 1.3699 -4.3764 1.0859 25 1 3.3889 -4.2607 2.8991 26 1 3.9146 -5.8886 0.5204 27 1 1.9460 -5.8175 2.8041 28 1 1.7054 -6.3521 1.1111 29 1 2.7650 -8.4804 1.5180 30 1 1.8830 -8.2151 3.0563 31 1 4.5372 -8.6737 3.1417 32 1 3.8508 -7.3776 4.1687 33 1 5.4603 -7.1565 1.6281 34 1 5.3815 -6.0376 3.0181 35 1 5.0755 -2.2340 1.0883 36 1 3.7080 -1.6965 2.0931 37 1 3.8771 -1.6006 -0.9543 38 1 3.8982 -0.2072 0.1556 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885608928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:11 Heat of formation + Delta-G solvation = -47.810622 kcal Electronic energy + Delta-G solvation = -15945.738760 eV Core-core repulsion = 13592.552381 eV Total energy + Delta-G solvation = -2353.186379 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05032 -38.08908 -35.05403 -32.98528 -31.38274 -29.53927 -29.17056 -26.71646 -23.49289 -23.14847 -21.72378 -21.15798 -20.42477 -18.14244 -16.96536 -16.60940 -16.32059 -15.59374 -14.93203 -14.65896 -14.44178 -14.22464 -14.07328 -13.87214 -13.50641 -13.09395 -12.78986 -12.68105 -12.37464 -11.95083 -11.90671 -11.88090 -11.81026 -11.70426 -11.52368 -11.34549 -11.26825 -10.73133 -10.60617 -10.44650 -9.12575 -8.16333 -6.10436 1.38747 1.40928 1.49813 2.41262 3.07867 3.36505 3.76739 3.83420 4.04141 4.17362 4.34893 4.54693 4.58962 4.63576 4.69285 4.74275 4.78260 4.89069 4.97252 5.00874 5.05895 5.10466 5.13513 5.19107 5.25903 5.32612 5.34006 5.42145 5.46634 5.52154 5.61179 5.64403 5.77893 5.84805 6.34193 6.36310 6.62335 6.96259 7.47442 8.94686 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054802 B = 0.006619 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.803584 B = 4229.463119 C = 4576.806268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.016 3.984 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.248 1.248 7 C -0.496 4.496 8 C 0.008 3.992 9 C -0.123 4.123 10 C 0.111 3.889 11 H 0.057 0.943 12 N -0.679 5.679 13 C 0.080 3.920 14 C -0.152 4.152 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.087 4.087 19 C -0.025 4.025 20 H 0.261 0.739 21 H 0.019 0.981 22 H -0.006 1.006 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.339 0.661 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.018 0.982 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.161 -12.705 5.437 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.172 1.172 7 C -0.515 4.515 8 C -0.030 4.030 9 C -0.162 4.162 10 C 0.002 3.998 11 H 0.075 0.925 12 N -0.308 5.308 13 C -0.030 4.030 14 C -0.191 4.191 15 C -0.157 4.157 16 C -0.157 4.157 17 C -0.149 4.149 18 C -0.125 4.125 19 C -0.063 4.063 20 H 0.070 0.930 21 H 0.038 0.962 22 H 0.012 0.988 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.158 0.842 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.700 -12.527 5.239 16.127 hybrid contribution -1.318 1.057 -0.197 1.700 sum 7.383 -11.470 5.042 14.543 Atomic orbital electron populations 1.69992 1.07760 1.27358 1.52539 1.25667 0.95398 1.02004 0.95028 0.85780 0.79377 0.79365 0.78641 1.20038 1.21963 1.17212 1.20690 0.91420 0.91728 1.47660 1.19302 0.96740 0.93878 0.93109 1.22203 0.97060 0.97933 0.98992 1.21272 0.91756 0.92888 0.93931 0.92522 1.60858 1.60692 1.03763 1.05491 1.22345 0.94116 0.87598 0.98940 1.23175 0.97636 0.97839 1.00466 1.22456 0.97747 0.95206 1.00296 1.22345 0.95513 0.99049 0.98785 1.22149 0.97210 0.96473 0.99093 1.21384 0.98160 0.94456 0.98498 1.19856 0.94484 0.96602 0.95324 0.92950 0.96211 0.98755 0.94610 0.93234 0.84218 0.91705 0.92132 0.92858 0.91081 0.91072 0.90375 0.91645 0.91246 0.91194 0.92463 0.94072 0.96334 0.94633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.38 12.73 21.44 0.27 -56.11 16 2 C 0.02 0.92 5.46 84.65 0.46 1.39 16 3 Si 0.94 43.97 27.53 68.60 1.89 45.86 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.25 -10.82 6.11 99.48 0.61 -10.21 16 7 C -0.50 -26.71 5.52 -16.17 -0.09 -26.80 16 8 C 0.01 0.41 5.96 30.11 0.18 0.58 16 9 C -0.12 -5.18 5.04 30.67 0.15 -5.02 16 10 C 0.11 4.18 2.36 44.90 0.11 4.29 16 11 H 0.06 2.22 7.44 -2.38 -0.02 2.20 16 12 N -0.68 -20.92 5.95 -465.80 -2.77 -23.69 16 13 C 0.08 2.12 3.22 45.64 0.15 2.26 16 14 C -0.15 -3.78 4.81 31.70 0.15 -3.63 16 15 C -0.12 -2.29 6.91 31.91 0.22 -2.07 16 16 C -0.12 -2.12 6.83 31.67 0.22 -1.90 16 17 C -0.11 -2.37 6.60 31.32 0.21 -2.16 16 18 C -0.09 -3.49 5.55 30.64 0.17 -3.32 16 19 C -0.02 -1.14 5.59 30.09 0.17 -0.98 16 20 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 21 H 0.02 1.12 7.07 -2.39 -0.02 1.11 16 22 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 1.90 5.68 -2.39 -0.01 1.89 16 25 H 0.34 10.21 7.87 -89.70 -0.71 9.51 16 26 H 0.06 1.85 7.45 -2.39 -0.02 1.83 16 27 H 0.06 1.58 7.57 -2.39 -0.02 1.56 16 28 H 0.05 1.45 7.35 -2.39 -0.02 1.43 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.57 7.92 -2.39 -0.02 1.55 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.04 1.62 4.59 -2.39 -0.01 1.60 16 Total: -1.00 -59.24 283.05 1.70 -57.54 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.22 Total: 13.77 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 2.09 Total: -37.36 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -2.50 Total: -79.80 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.89 Total: 45.86 kcal Total: -59.24 1.70 -57.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885608928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.725 kcal (2) G-P(sol) polarization free energy of solvation -59.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds