Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00003 * 2 1 4 4 N 1.46901 * 109.47433 * 125.00279 * 3 2 1 5 5 C 1.46847 * 110.99777 * 293.95960 * 4 3 2 6 6 C 1.53041 * 109.52014 * 185.83623 * 5 4 3 7 7 C 1.53117 * 109.27891 * 300.81827 * 6 5 4 8 8 C 1.53007 * 109.52136 * 297.74740 * 7 6 5 9 9 C 1.52997 * 109.57420 * 177.59374 * 7 6 5 10 10 C 1.53116 * 109.16193 * 57.65579 * 7 6 5 11 11 H 1.08990 * 109.50277 * 62.32655 * 10 7 6 12 12 C 1.50709 * 109.50222 * 182.40687 * 10 7 6 13 13 H 1.07995 * 120.00200 * 26.06809 * 12 10 7 14 14 C 1.37876 * 119.99707 * 206.06653 * 12 10 7 15 15 N 1.31516 * 120.00043 * 353.95391 * 14 12 10 16 16 Si 1.86797 * 119.99979 * 173.95148 * 14 12 10 17 17 H 1.48500 * 109.47037 * 89.99957 * 16 14 12 18 18 H 1.48501 * 109.46973 * 329.99777 * 16 14 12 19 19 H 1.48500 * 109.47067 * 210.00193 * 16 14 12 20 20 C 1.46859 * 110.99325 * 58.20291 * 4 3 2 21 21 H 1.07997 * 120.00325 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00177 * 180.02562 * 1 2 3 23 23 H 1.08001 * 120.00247 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47250 * 5.00325 * 3 2 1 25 25 H 1.09003 * 109.47493 * 245.00321 * 3 2 1 26 26 H 1.08998 * 109.46492 * 65.82394 * 5 4 3 27 27 H 1.08997 * 109.45165 * 305.84110 * 5 4 3 28 28 H 1.08997 * 109.50388 * 180.87463 * 6 5 4 29 29 H 1.09001 * 109.50518 * 60.76214 * 6 5 4 30 30 H 1.08998 * 109.47163 * 179.67955 * 8 7 6 31 31 H 1.08996 * 109.47232 * 299.68171 * 8 7 6 32 32 H 1.08999 * 109.46787 * 59.68594 * 8 7 6 33 33 H 1.08999 * 109.47248 * 300.28218 * 9 7 6 34 34 H 1.09001 * 109.47585 * 60.28841 * 9 7 6 35 35 H 1.09004 * 109.47130 * 180.28287 * 9 7 6 36 36 H 0.96998 * 120.00334 * 359.89773 * 15 14 12 37 37 H 1.09001 * 109.49567 * 54.16679 * 20 4 3 38 38 H 1.08994 * 109.43122 * 294.19920 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2715 1.3470 2.4115 6 6 3.2658 1.5214 3.5618 7 6 4.2729 0.3683 3.5387 8 6 3.5386 -0.9564 3.7556 9 6 5.3062 0.5679 4.6492 10 6 4.9795 0.3453 2.1805 11 1 5.5348 1.2731 2.0435 12 6 5.9303 -0.8228 2.1277 13 1 5.7479 -1.6955 2.7371 14 6 7.0330 -0.7772 1.3013 15 7 7.1922 0.2313 0.4723 16 14 8.3007 -2.1479 1.3591 17 1 7.9273 -3.2088 0.3894 18 1 8.3468 -2.7221 2.7278 19 1 9.6360 -1.6023 1.0061 20 6 3.9362 0.2054 1.0696 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3585 2.1316 0.0896 25 1 2.6212 1.4027 -0.9314 26 1 1.7343 0.4067 2.5353 27 1 1.5618 2.1742 2.4164 28 1 2.7291 1.5169 4.5105 29 1 3.7936 2.4680 3.4462 30 1 4.2555 -1.7771 3.7333 31 1 3.0361 -0.9391 4.7227 32 1 2.8012 -1.0966 2.9653 33 1 5.8272 1.5128 4.4952 34 1 4.8024 0.5841 5.6157 35 1 6.0252 -0.2511 4.6281 36 1 6.5332 0.9423 0.4412 37 1 4.4354 0.2035 0.1007 38 1 3.3910 -0.7295 1.1989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259103025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = 5.188330 kcal Electronic energy + Delta-G solvation = -16548.070818 eV Core-core repulsion = 14197.182646 eV Total energy + Delta-G solvation = -2350.888172 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.20984 -35.79520 -32.99517 -32.33218 -29.59158 -27.75772 -26.48138 -24.76769 -24.06638 -21.63301 -21.07445 -19.40513 -17.66463 -16.30777 -15.34274 -14.52861 -14.49972 -14.19287 -13.93858 -13.64821 -13.32349 -12.97370 -12.15596 -11.80260 -11.61276 -11.33708 -11.24261 -11.06030 -10.99550 -10.82593 -10.72107 -10.63688 -10.22886 -10.09201 -9.77239 -9.57069 -9.24350 -8.88363 -8.37575 -8.18757 -7.53854 -6.27884 -3.98069 2.42467 3.44923 3.48407 3.63710 4.54586 4.69117 5.11803 5.33015 5.43313 5.50894 5.62063 5.71835 5.75494 6.00063 6.02611 6.08613 6.15017 6.18540 6.31875 6.40370 6.47257 6.56413 6.67027 6.70868 6.71910 6.76250 6.79710 6.88145 7.09477 7.19483 7.22201 7.48161 7.65388 7.83428 7.85541 8.38766 8.54734 8.97299 9.73633 11.11053 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.010212 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.839291 B = 2741.223702 C = 3270.912461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.078 3.922 4 N -0.535 5.535 5 C 0.061 3.939 6 C -0.107 4.107 7 C -0.055 4.055 8 C -0.131 4.131 9 C -0.123 4.123 10 C 0.051 3.949 11 H 0.036 0.964 12 C -0.587 4.587 13 H 0.052 0.948 14 C 0.020 3.980 15 N -0.912 5.912 16 Si 1.063 2.937 17 H -0.291 1.291 18 H -0.289 1.289 19 H -0.285 1.285 20 C 0.063 3.937 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.109 0.891 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.029 0.971 35 H 0.064 0.936 36 H 0.274 0.726 37 H 0.063 0.937 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.672 0.607 2.840 10.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.195 4.195 3 C -0.050 4.050 4 N -0.258 5.258 5 C -0.067 4.067 6 C -0.145 4.145 7 C -0.055 4.055 8 C -0.188 4.188 9 C -0.180 4.180 10 C 0.032 3.968 11 H 0.054 0.946 12 C -0.626 4.626 13 H 0.070 0.930 14 C -0.184 4.184 15 N -0.548 5.548 16 Si 0.893 3.107 17 H -0.218 1.218 18 H -0.216 1.216 19 H -0.211 1.211 20 C -0.063 4.063 21 H 0.111 0.889 22 H 0.109 0.891 23 H 0.127 0.873 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.933 0.546 2.156 8.239 hybrid contribution -2.043 -0.361 0.612 2.163 sum -9.977 0.185 2.768 10.355 Atomic orbital electron populations 1.23728 0.95874 1.01202 1.02974 1.23881 0.96595 1.00962 0.98046 1.21396 0.94469 0.93284 0.95887 1.62396 1.16372 1.46196 1.00814 1.21986 0.95393 0.99087 0.90193 1.21690 0.97105 0.99721 0.95960 1.20529 0.94099 0.92808 0.98066 1.21874 0.99657 0.98730 0.98555 1.21667 0.98779 1.01809 0.95752 1.18861 0.92015 0.98060 0.87893 0.94578 1.21960 1.09777 1.02960 1.27911 0.92965 1.25718 0.98636 1.01130 0.92966 1.70735 1.39064 1.10546 1.34496 0.83624 0.76367 0.75077 0.75662 1.21765 1.21571 1.21104 1.22589 0.92964 0.88772 1.02022 0.88924 0.89129 0.87308 0.91330 0.90240 0.95158 0.92617 0.93144 0.92001 0.91896 0.95183 0.93796 0.93873 0.95238 0.91686 0.91465 0.91863 0.95825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.62 14.32 29.02 0.42 -2.20 16 2 C -0.18 -2.70 7.84 -36.02 -0.28 -2.99 16 3 C 0.08 1.27 5.82 -4.98 -0.03 1.24 16 4 N -0.53 -10.31 4.86 -236.10 -1.15 -11.45 16 5 C 0.06 1.08 4.89 -3.83 -0.02 1.06 16 6 C -0.11 -1.94 4.89 -26.65 -0.13 -2.07 16 7 C -0.05 -1.12 0.55 -154.39 -0.08 -1.20 16 8 C -0.13 -2.53 7.62 37.16 0.28 -2.25 16 9 C -0.12 -2.43 8.27 37.16 0.31 -2.12 16 10 C 0.05 1.22 1.18 -91.69 -0.11 1.11 16 11 H 0.04 0.98 6.98 -51.93 -0.36 0.62 16 12 C -0.59 -15.54 6.82 -34.44 -0.23 -15.77 16 13 H 0.05 1.38 5.96 -52.49 -0.31 1.07 16 14 C 0.02 0.56 5.45 -17.82 -0.10 0.47 16 15 N -0.91 -26.94 13.61 55.43 0.75 -26.19 16 16 Si 1.06 24.88 29.91 -169.99 -5.08 19.80 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.06 1.41 3.90 -3.83 -0.01 1.40 16 21 H 0.09 1.09 7.84 -52.49 -0.41 0.68 16 22 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 23 H 0.11 1.83 6.87 -52.49 -0.36 1.47 16 24 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 25 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.03 0.54 5.84 -51.93 -0.30 0.24 16 27 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.30 6.19 -51.93 -0.32 0.98 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.85 4.92 -51.93 -0.26 0.59 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 1.38 7.30 -51.93 -0.38 1.00 16 36 H 0.27 8.12 6.29 -40.82 -0.26 7.87 16 37 H 0.06 1.57 7.66 -51.93 -0.40 1.17 16 38 H 0.02 0.53 5.03 -51.93 -0.26 0.27 16 LS Contribution 284.78 15.07 4.29 4.29 Total: -1.00 -27.83 284.78 -7.37 -35.20 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.20 Total: 1.68 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 0.01 Total: -23.33 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.39 Total: -37.64 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.83 -7.37 -35.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259103025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.389 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds