Wall clock time and date at job start Mon Mar 30 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00003 * 2 1 4 4 N 1.46901 * 109.47433 * 125.00279 * 3 2 1 5 5 C 1.46847 * 110.99777 * 293.95960 * 4 3 2 6 6 C 1.53041 * 109.52014 * 185.83623 * 5 4 3 7 7 C 1.53117 * 109.27891 * 300.81827 * 6 5 4 8 8 C 1.53007 * 109.52136 * 297.74740 * 7 6 5 9 9 C 1.52997 * 109.57420 * 177.59374 * 7 6 5 10 10 C 1.53116 * 109.16193 * 57.65579 * 7 6 5 11 11 H 1.08990 * 109.50277 * 62.32655 * 10 7 6 12 12 C 1.50709 * 109.50222 * 182.40687 * 10 7 6 13 13 H 1.07995 * 120.00200 * 26.06809 * 12 10 7 14 14 C 1.37876 * 119.99707 * 206.06653 * 12 10 7 15 15 N 1.31516 * 120.00043 * 353.95391 * 14 12 10 16 16 Si 1.86797 * 119.99979 * 173.95148 * 14 12 10 17 17 H 1.48500 * 109.47037 * 89.99957 * 16 14 12 18 18 H 1.48501 * 109.46973 * 329.99777 * 16 14 12 19 19 H 1.48500 * 109.47067 * 210.00193 * 16 14 12 20 20 C 1.46859 * 110.99325 * 58.20291 * 4 3 2 21 21 H 1.07997 * 120.00325 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00177 * 180.02562 * 1 2 3 23 23 H 1.08001 * 120.00247 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47250 * 5.00325 * 3 2 1 25 25 H 1.09003 * 109.47493 * 245.00321 * 3 2 1 26 26 H 1.08998 * 109.46492 * 65.82394 * 5 4 3 27 27 H 1.08997 * 109.45165 * 305.84110 * 5 4 3 28 28 H 1.08997 * 109.50388 * 180.87463 * 6 5 4 29 29 H 1.09001 * 109.50518 * 60.76214 * 6 5 4 30 30 H 1.08998 * 109.47163 * 179.67955 * 8 7 6 31 31 H 1.08996 * 109.47232 * 299.68171 * 8 7 6 32 32 H 1.08999 * 109.46787 * 59.68594 * 8 7 6 33 33 H 1.08999 * 109.47248 * 300.28218 * 9 7 6 34 34 H 1.09001 * 109.47585 * 60.28841 * 9 7 6 35 35 H 1.09004 * 109.47130 * 180.28287 * 9 7 6 36 36 H 0.96998 * 120.00334 * 359.89773 * 15 14 12 37 37 H 1.09001 * 109.49567 * 54.16679 * 20 4 3 38 38 H 1.08994 * 109.43122 * 294.19920 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2715 1.3470 2.4115 6 6 3.2658 1.5214 3.5618 7 6 4.2729 0.3683 3.5387 8 6 3.5386 -0.9564 3.7556 9 6 5.3062 0.5679 4.6492 10 6 4.9795 0.3453 2.1805 11 1 5.5348 1.2731 2.0435 12 6 5.9303 -0.8228 2.1277 13 1 5.7479 -1.6955 2.7371 14 6 7.0330 -0.7772 1.3013 15 7 7.1922 0.2313 0.4723 16 14 8.3007 -2.1479 1.3591 17 1 7.9273 -3.2088 0.3894 18 1 8.3468 -2.7221 2.7278 19 1 9.6360 -1.6023 1.0061 20 6 3.9362 0.2054 1.0696 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3585 2.1316 0.0896 25 1 2.6212 1.4027 -0.9314 26 1 1.7343 0.4067 2.5353 27 1 1.5618 2.1742 2.4164 28 1 2.7291 1.5169 4.5105 29 1 3.7936 2.4680 3.4462 30 1 4.2555 -1.7771 3.7333 31 1 3.0361 -0.9391 4.7227 32 1 2.8012 -1.0966 2.9653 33 1 5.8272 1.5128 4.4952 34 1 4.8024 0.5841 5.6157 35 1 6.0252 -0.2511 4.6281 36 1 6.5332 0.9423 0.4412 37 1 4.4354 0.2035 0.1007 38 1 3.3910 -0.7295 1.1989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259103025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:04 Heat of formation + Delta-G solvation = -11.357833 kcal Electronic energy + Delta-G solvation = -16548.788314 eV Core-core repulsion = 14197.182646 eV Total energy + Delta-G solvation = -2351.605668 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80952 -37.26463 -34.96998 -33.66513 -31.31856 -29.29134 -28.06754 -26.69206 -25.53709 -23.44943 -22.53965 -20.72724 -19.42016 -18.14626 -16.74355 -16.25270 -16.01974 -15.74790 -15.54465 -15.35749 -14.91743 -14.35986 -13.64934 -13.44774 -13.36447 -12.97681 -12.73658 -12.67369 -12.53764 -12.38819 -12.26629 -12.21715 -11.95130 -11.89193 -11.42234 -11.24869 -10.73071 -10.45848 -10.35938 -10.13573 -9.06080 -8.49080 -6.17836 1.30251 1.52981 1.61103 1.77651 2.61071 3.15411 3.36898 3.93298 4.01724 4.10571 4.12004 4.18857 4.43842 4.50460 4.54904 4.68167 4.76631 4.80622 4.86202 4.89252 4.93834 5.00486 5.02895 5.09357 5.17808 5.21451 5.38261 5.46039 5.56403 5.63611 5.68095 5.73929 5.88926 6.08908 6.37234 6.37808 6.41904 6.80659 7.61148 8.89680 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026513 B = 0.010212 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.839291 B = 2741.223702 C = 3270.912461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.205 4.205 3 C 0.080 3.920 4 N -0.550 5.550 5 C 0.064 3.936 6 C -0.103 4.103 7 C -0.058 4.058 8 C -0.123 4.123 9 C -0.119 4.119 10 C 0.049 3.951 11 H -0.006 1.006 12 C -0.585 4.585 13 H 0.051 0.949 14 C -0.034 4.034 15 N -0.943 5.943 16 Si 1.106 2.894 17 H -0.280 1.280 18 H -0.271 1.271 19 H -0.289 1.289 20 C 0.087 3.913 21 H 0.115 0.885 22 H 0.106 0.894 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.259 0.741 37 H 0.023 0.977 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.057 0.331 4.240 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.225 4.225 3 C -0.047 4.047 4 N -0.273 5.273 5 C -0.064 4.064 6 C -0.141 4.141 7 C -0.059 4.059 8 C -0.179 4.179 9 C -0.176 4.176 10 C 0.030 3.970 11 H 0.012 0.988 12 C -0.623 4.623 13 H 0.069 0.931 14 C -0.232 4.232 15 N -0.581 5.581 16 Si 0.930 3.070 17 H -0.206 1.206 18 H -0.196 1.196 19 H -0.215 1.215 20 C -0.041 4.041 21 H 0.133 0.867 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.113 0.887 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.346 0.268 3.569 10.947 hybrid contribution -1.411 -0.244 0.185 1.443 sum -11.757 0.024 3.754 12.341 Atomic orbital electron populations 1.23985 0.94766 1.02970 0.98538 1.23587 0.97445 0.99333 1.02144 1.21398 0.94270 0.94966 0.94114 1.62278 1.17598 1.44479 1.02947 1.22048 0.95328 1.00327 0.88691 1.21667 0.96714 0.97808 0.97919 1.20524 0.94810 0.94832 0.95695 1.21768 0.99025 0.97007 1.00148 1.21619 0.98414 1.00262 0.97345 1.18796 0.92158 0.94966 0.91064 0.98761 1.22290 1.10033 1.03455 1.26559 0.93063 1.27018 1.01015 1.02431 0.92730 1.70853 1.39234 1.11481 1.36542 0.83066 0.74066 0.73054 0.76822 1.20590 1.19561 1.21452 1.22057 0.93082 0.89929 0.99049 0.86729 0.87586 0.89686 0.88675 0.91762 0.94808 0.89848 0.89925 0.93117 0.93900 0.92066 0.94087 0.94975 0.91810 0.93896 0.93102 0.95863 0.96216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 14.32 67.79 0.97 -2.77 16 2 C -0.21 -6.07 7.84 25.65 0.20 -5.87 16 3 C 0.08 2.55 5.82 85.56 0.50 3.05 16 4 N -0.55 -21.06 4.86 -900.90 -4.38 -25.43 16 5 C 0.06 2.06 4.89 86.33 0.42 2.48 16 6 C -0.10 -3.50 4.89 30.65 0.15 -3.35 16 7 C -0.06 -2.33 0.55 -52.10 -0.03 -2.35 16 8 C -0.12 -4.50 7.62 71.98 0.55 -3.95 16 9 C -0.12 -4.60 8.27 71.98 0.60 -4.01 16 10 C 0.05 2.44 1.18 -11.49 -0.01 2.42 16 11 H -0.01 -0.34 6.98 -2.39 -0.02 -0.35 16 12 C -0.58 -31.85 6.82 25.60 0.17 -31.68 16 13 H 0.05 2.76 5.96 -2.91 -0.02 2.74 16 14 C -0.03 -1.94 5.45 84.65 0.46 -1.47 16 15 N -0.94 -58.36 13.61 21.45 0.29 -58.07 16 16 Si 1.11 50.99 29.91 68.60 2.05 53.04 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 20 C 0.09 4.01 3.90 86.32 0.34 4.34 16 21 H 0.11 2.14 7.84 -2.91 -0.02 2.12 16 22 H 0.11 2.11 8.06 -2.91 -0.02 2.09 16 23 H 0.08 2.90 6.87 -2.91 -0.02 2.88 16 24 H 0.10 2.51 7.71 -2.39 -0.02 2.49 16 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.03 1.09 5.84 -2.39 -0.01 1.08 16 27 H 0.08 2.28 8.06 -2.39 -0.02 2.26 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.72 6.19 -2.39 -0.01 1.71 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.51 4.92 -2.39 -0.01 1.50 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.04 1.81 7.30 -2.38 -0.02 1.79 16 36 H 0.26 16.38 6.29 -92.71 -0.58 15.79 16 37 H 0.02 1.22 7.66 -2.39 -0.02 1.20 16 38 H 0.02 0.91 5.03 -2.39 -0.01 0.90 16 Total: -1.00 -62.67 284.78 3.48 -59.19 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.20 Total: 14.42 kcal Atomic # 6 Polarization: -47.47 SS G_CDS: 4.32 Total: -43.15 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -4.08 Total: -83.50 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Total: -62.67 3.48 -59.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259103025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.833 kcal (2) G-P(sol) polarization free energy of solvation -62.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds