Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00230 * 2 1 4 4 N 1.46898 * 109.47600 * 124.99663 * 3 2 1 5 5 C 1.46846 * 111.00013 * 45.79035 * 4 3 2 6 6 C 1.53030 * 109.52481 * 185.84162 * 5 4 3 7 7 C 1.53115 * 109.28045 * 300.82165 * 6 5 4 8 8 H 1.09002 * 109.57402 * 297.71711 * 7 6 5 9 9 C 1.50695 * 109.52677 * 177.56183 * 7 6 5 10 10 H 1.08004 * 120.00027 * 245.98234 * 9 7 6 11 11 C 1.37871 * 120.00367 * 65.98187 * 9 7 6 12 12 N 1.31517 * 120.00462 * 197.76440 * 11 9 7 13 13 Si 1.86800 * 119.99955 * 17.76464 * 11 9 7 14 14 H 1.48498 * 109.47393 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47086 * 60.00153 * 13 11 9 16 16 H 1.48495 * 109.47303 * 300.00191 * 13 11 9 17 17 C 1.53121 * 109.16131 * 57.64948 * 7 6 5 18 18 C 1.46848 * 110.99959 * 170.00151 * 4 3 2 19 19 C 1.52998 * 109.46442 * 54.14808 * 18 4 3 20 20 C 1.52999 * 109.46008 * 294.17308 * 18 4 3 21 21 H 1.08004 * 119.99670 * 180.02562 * 1 2 3 22 22 H 1.08001 * 119.99900 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.99900 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47033 * 4.99084 * 3 2 1 25 25 H 1.09000 * 109.46898 * 244.99822 * 3 2 1 26 26 H 1.09011 * 109.46116 * 305.85875 * 5 4 3 27 27 H 1.09000 * 109.46103 * 65.83263 * 5 4 3 28 28 H 1.09004 * 109.50779 * 180.87862 * 6 5 4 29 29 H 1.09009 * 109.50507 * 60.75943 * 6 5 4 30 30 H 0.97004 * 119.99665 * 354.63053 * 12 11 9 31 31 H 1.09007 * 109.49896 * 62.29427 * 17 7 6 32 32 H 1.09006 * 109.50351 * 182.36530 * 17 7 6 33 33 H 1.08994 * 109.47056 * 180.02562 * 19 18 4 34 34 H 1.09008 * 109.46474 * 300.04775 * 19 18 4 35 35 H 1.08997 * 109.47179 * 60.04921 * 19 18 4 36 36 H 1.08993 * 109.47499 * 299.94659 * 20 18 4 37 37 H 1.08997 * 109.47229 * 59.95334 * 20 18 4 38 38 H 1.09006 * 109.46875 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.7352 0.0673 1.2384 6 6 4.5865 0.0753 2.5101 7 6 5.5615 1.2548 2.4583 8 1 6.2356 1.1345 1.6103 9 6 6.3614 1.3034 3.7345 10 1 6.2412 2.1327 4.4159 11 6 7.2467 0.2893 4.0323 12 7 7.6790 0.1345 5.2647 13 14 7.8323 -0.8648 2.6853 14 1 8.7727 -1.8600 3.2602 15 1 8.5246 -0.0826 1.6297 16 1 6.6658 -1.5688 2.0949 17 6 4.7688 2.5555 2.3013 18 6 3.9122 2.4756 1.0357 19 6 3.1030 3.7653 0.8855 20 6 4.8194 2.2981 -0.1835 21 1 -0.5400 -0.9354 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0894 25 1 2.6213 1.4024 -0.9314 26 1 3.0301 -0.7631 1.2786 27 1 4.3824 -0.0477 0.3690 28 1 5.1468 -0.8572 2.5789 29 1 3.9389 0.1765 3.3810 30 1 7.4372 0.7791 5.9481 31 1 4.1241 2.6957 3.1690 32 1 5.4594 3.3951 2.2217 33 1 3.7828 4.6142 0.8117 34 1 2.4928 3.7085 -0.0160 35 1 2.4570 3.8922 1.7542 36 1 5.3963 1.3797 -0.0766 37 1 4.2094 2.2412 -1.0850 38 1 5.4990 3.1472 -0.2573 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259176012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = 17.167980 kcal Electronic energy + Delta-G solvation = -16408.564995 eV Core-core repulsion = 14058.196299 eV Total energy + Delta-G solvation = -2350.368696 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.63527 -35.09327 -33.57113 -31.93588 -31.08341 -27.41586 -26.82809 -25.81651 -23.87402 -22.15972 -19.89634 -19.24988 -17.70376 -17.36607 -15.75356 -15.43023 -14.64935 -14.08313 -13.75136 -13.45012 -13.37987 -12.80488 -12.49845 -12.21128 -11.99112 -11.77745 -11.55793 -11.44420 -11.18057 -10.94977 -10.78935 -10.40329 -10.29015 -10.01719 -9.73329 -9.49703 -9.44394 -9.08680 -8.67355 -8.11414 -7.73430 -6.36967 -3.97169 2.31423 3.39658 3.44512 3.63055 4.37307 4.53710 4.93679 5.19115 5.27243 5.32991 5.37016 5.52110 5.56106 5.71310 5.83468 5.89373 5.90651 5.94906 6.06456 6.09893 6.26287 6.37484 6.40794 6.42111 6.52641 6.64012 6.67129 6.81234 6.85821 6.97125 7.11443 7.34771 7.55341 7.68415 7.75605 8.27396 8.45383 8.99181 9.70591 11.01930 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032632 B = 0.009066 C = 0.008164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.836070 B = 3087.744202 C = 3428.774536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.073 3.927 4 N -0.518 5.518 5 C 0.047 3.953 6 C -0.118 4.118 7 C 0.021 3.979 8 H 0.017 0.983 9 C -0.594 4.594 10 H 0.053 0.947 11 C 0.028 3.972 12 N -0.912 5.912 13 Si 1.046 2.954 14 H -0.288 1.288 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.082 4.082 18 C 0.103 3.897 19 C -0.138 4.138 20 C -0.181 4.181 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.266 0.734 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.435 1.964 -12.092 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.164 4.164 3 C -0.054 4.054 4 N -0.242 5.242 5 C -0.081 4.081 6 C -0.156 4.156 7 C 0.002 3.998 8 H 0.035 0.965 9 C -0.631 4.631 10 H 0.071 0.929 11 C -0.176 4.176 12 N -0.546 5.546 13 Si 0.875 3.125 14 H -0.214 1.214 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.120 4.120 18 C 0.014 3.986 19 C -0.196 4.196 20 C -0.239 4.239 21 H 0.113 0.887 22 H 0.112 0.888 23 H 0.128 0.872 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.775 0.678 -11.920 15.430 hybrid contribution -0.463 1.255 -0.421 1.402 sum -10.237 1.933 -12.341 16.151 Atomic orbital electron populations 1.23734 0.95783 1.01503 1.02106 1.23053 0.96050 0.98557 0.98694 1.21348 0.95491 0.95425 0.93126 1.62321 1.18686 1.03200 1.40002 1.22359 0.95845 0.90801 0.99050 1.22106 0.97636 1.00764 0.95117 1.19033 0.92944 0.90652 0.97208 0.96461 1.22002 1.24813 1.10471 1.05862 0.92863 1.25735 0.94322 0.98077 0.99486 1.70853 1.48222 1.34705 1.00860 0.84028 0.76688 0.76382 0.75369 1.21384 1.21229 1.20048 1.21512 0.96693 0.99409 0.94348 1.21188 0.91456 0.90022 0.95968 1.21901 0.99813 0.96515 1.01328 1.22501 1.00350 1.03042 0.98040 0.88716 0.88751 0.87242 0.90606 0.94048 0.91662 0.95422 0.92053 0.92130 0.92381 0.92303 0.92875 0.92525 0.93351 0.92087 0.91534 0.93521 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 14.32 29.01 0.42 -1.76 16 2 C -0.15 -1.87 8.56 -36.03 -0.31 -2.18 16 3 C 0.07 1.02 4.68 -4.98 -0.02 1.00 16 4 N -0.52 -8.79 4.58 -220.44 -1.01 -9.80 16 5 C 0.05 0.85 4.70 -3.84 -0.02 0.83 16 6 C -0.12 -2.62 5.06 -26.66 -0.13 -2.75 16 7 C 0.02 0.49 1.44 -91.65 -0.13 0.36 16 8 H 0.02 0.42 5.20 -51.93 -0.27 0.15 16 9 C -0.59 -16.82 8.82 -34.45 -0.30 -17.12 16 10 H 0.05 1.63 7.99 -52.48 -0.42 1.21 16 11 C 0.03 0.82 5.34 -17.82 -0.10 0.72 16 12 N -0.91 -28.38 13.70 55.43 0.76 -27.62 16 13 Si 1.05 25.52 26.41 -169.99 -4.49 21.03 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.13 5.57 56.52 0.32 -5.82 16 17 C -0.08 -1.69 4.12 -26.65 -0.11 -1.80 16 18 C 0.10 1.75 0.68 -131.61 -0.09 1.66 16 19 C -0.14 -1.97 8.06 37.16 0.30 -1.67 16 20 C -0.18 -2.88 7.48 37.16 0.28 -2.61 16 21 H 0.09 0.93 8.06 -52.48 -0.42 0.51 16 22 H 0.09 0.98 7.84 -52.49 -0.41 0.57 16 23 H 0.11 1.41 6.47 -52.49 -0.34 1.07 16 24 H 0.08 0.99 6.49 -51.93 -0.34 0.66 16 25 H 0.04 0.57 6.07 -51.93 -0.32 0.25 16 26 H 0.07 1.09 5.79 -51.92 -0.30 0.79 16 27 H 0.03 0.50 6.19 -51.93 -0.32 0.17 16 28 H 0.06 1.41 4.87 -51.93 -0.25 1.16 16 29 H 0.06 1.42 8.14 -51.92 -0.42 1.00 16 30 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.61 6.55 -51.92 -0.34 0.27 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.17 4.80 -51.93 -0.25 0.92 16 37 H 0.05 0.65 6.35 -51.93 -0.33 0.32 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 278.03 15.07 4.19 4.19 Total: -1.00 -29.68 278.03 -6.86 -36.54 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.09 Total: 0.98 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -0.22 Total: -25.32 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.25 Total: -37.42 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.49 Total: 21.03 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.68 -6.86 -36.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259176012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.711 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds