Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50694 * 120.00230 * 2 1 4 4 N 1.46898 * 109.47600 * 124.99663 * 3 2 1 5 5 C 1.46846 * 111.00013 * 45.79035 * 4 3 2 6 6 C 1.53030 * 109.52481 * 185.84162 * 5 4 3 7 7 C 1.53115 * 109.28045 * 300.82165 * 6 5 4 8 8 H 1.09002 * 109.57402 * 297.71711 * 7 6 5 9 9 C 1.50695 * 109.52677 * 177.56183 * 7 6 5 10 10 H 1.08004 * 120.00027 * 245.98234 * 9 7 6 11 11 C 1.37871 * 120.00367 * 65.98187 * 9 7 6 12 12 N 1.31517 * 120.00462 * 197.76440 * 11 9 7 13 13 Si 1.86800 * 119.99955 * 17.76464 * 11 9 7 14 14 H 1.48498 * 109.47393 * 179.97438 * 13 11 9 15 15 H 1.48503 * 109.47086 * 60.00153 * 13 11 9 16 16 H 1.48495 * 109.47303 * 300.00191 * 13 11 9 17 17 C 1.53121 * 109.16131 * 57.64948 * 7 6 5 18 18 C 1.46848 * 110.99959 * 170.00151 * 4 3 2 19 19 C 1.52998 * 109.46442 * 54.14808 * 18 4 3 20 20 C 1.52999 * 109.46008 * 294.17308 * 18 4 3 21 21 H 1.08004 * 119.99670 * 180.02562 * 1 2 3 22 22 H 1.08001 * 119.99900 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.99900 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47033 * 4.99084 * 3 2 1 25 25 H 1.09000 * 109.46898 * 244.99822 * 3 2 1 26 26 H 1.09011 * 109.46116 * 305.85875 * 5 4 3 27 27 H 1.09000 * 109.46103 * 65.83263 * 5 4 3 28 28 H 1.09004 * 109.50779 * 180.87862 * 6 5 4 29 29 H 1.09009 * 109.50507 * 60.75943 * 6 5 4 30 30 H 0.97004 * 119.99665 * 354.63053 * 12 11 9 31 31 H 1.09007 * 109.49896 * 62.29427 * 17 7 6 32 32 H 1.09006 * 109.50351 * 182.36530 * 17 7 6 33 33 H 1.08994 * 109.47056 * 180.02562 * 19 18 4 34 34 H 1.09008 * 109.46474 * 300.04775 * 19 18 4 35 35 H 1.08997 * 109.47179 * 60.04921 * 19 18 4 36 36 H 1.08993 * 109.47499 * 299.94659 * 20 18 4 37 37 H 1.08997 * 109.47229 * 59.95334 * 20 18 4 38 38 H 1.09006 * 109.46875 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.7352 0.0673 1.2384 6 6 4.5865 0.0753 2.5101 7 6 5.5615 1.2548 2.4583 8 1 6.2356 1.1345 1.6103 9 6 6.3614 1.3034 3.7345 10 1 6.2412 2.1327 4.4159 11 6 7.2467 0.2893 4.0323 12 7 7.6790 0.1345 5.2647 13 14 7.8323 -0.8648 2.6853 14 1 8.7727 -1.8600 3.2602 15 1 8.5246 -0.0826 1.6297 16 1 6.6658 -1.5688 2.0949 17 6 4.7688 2.5555 2.3013 18 6 3.9122 2.4756 1.0357 19 6 3.1030 3.7653 0.8855 20 6 4.8194 2.2981 -0.1835 21 1 -0.5400 -0.9354 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0894 25 1 2.6213 1.4024 -0.9314 26 1 3.0301 -0.7631 1.2786 27 1 4.3824 -0.0477 0.3690 28 1 5.1468 -0.8572 2.5789 29 1 3.9389 0.1765 3.3810 30 1 7.4372 0.7791 5.9481 31 1 4.1241 2.6957 3.1690 32 1 5.4594 3.3951 2.2217 33 1 3.7828 4.6142 0.8117 34 1 2.4928 3.7085 -0.0160 35 1 2.4570 3.8922 1.7542 36 1 5.3963 1.3797 -0.0766 37 1 4.2094 2.2412 -1.0850 38 1 5.4990 3.1472 -0.2573 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259176012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -2.149286 kcal Electronic energy + Delta-G solvation = -16409.402654 eV Core-core repulsion = 14058.196299 eV Total energy + Delta-G solvation = -2351.206355 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03463 -36.53423 -35.14390 -33.69453 -32.58461 -28.85847 -28.11353 -27.37290 -25.42229 -23.71045 -21.61995 -20.34402 -19.64057 -19.06270 -17.03317 -16.69493 -16.03482 -15.62472 -15.43144 -14.83083 -14.76175 -14.41618 -13.93792 -13.81693 -13.50816 -13.23645 -12.80956 -12.74256 -12.64382 -12.39847 -12.15373 -12.01908 -11.80041 -11.73713 -11.47775 -11.26240 -10.87634 -10.63780 -10.35638 -10.32153 -9.00222 -8.70532 -6.32890 1.41108 1.42968 1.50879 1.70512 2.48934 3.07928 3.11141 3.90378 3.95312 4.05969 4.24372 4.26291 4.33770 4.37234 4.58509 4.62652 4.71130 4.75497 4.80072 4.84150 4.91967 4.95582 4.97228 5.07958 5.15184 5.23028 5.25810 5.31099 5.42593 5.54704 5.75731 5.80866 5.91741 6.04272 6.18789 6.29731 6.38764 6.61335 7.44442 8.65646 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032632 B = 0.009066 C = 0.008164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.836070 B = 3087.744202 C = 3428.774536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.170 4.170 3 C 0.077 3.923 4 N -0.533 5.533 5 C 0.056 3.944 6 C -0.114 4.114 7 C 0.020 3.980 8 H 0.024 0.976 9 C -0.599 4.599 10 H 0.010 0.990 11 C -0.024 4.024 12 N -0.944 5.944 13 Si 1.083 2.917 14 H -0.291 1.291 15 H -0.265 1.265 16 H -0.240 1.240 17 C -0.078 4.078 18 C 0.105 3.895 19 C -0.132 4.132 20 C -0.178 4.178 21 H 0.109 0.891 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.249 0.751 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.094 1.570 -15.387 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.188 4.188 3 C -0.049 4.049 4 N -0.257 5.257 5 C -0.071 4.071 6 C -0.152 4.152 7 C 0.001 3.999 8 H 0.042 0.958 9 C -0.637 4.637 10 H 0.028 0.972 11 C -0.221 4.221 12 N -0.581 5.581 13 Si 0.905 3.095 14 H -0.217 1.217 15 H -0.190 1.190 16 H -0.164 1.164 17 C -0.117 4.117 18 C 0.016 3.984 19 C -0.190 4.190 20 C -0.236 4.236 21 H 0.127 0.873 22 H 0.122 0.878 23 H 0.126 0.874 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.468 0.313 -15.225 19.063 hybrid contribution -0.016 1.467 0.701 1.625 sum -11.484 1.779 -14.524 18.601 Atomic orbital electron populations 1.23964 0.95362 1.02721 0.99407 1.23023 0.96646 0.98016 1.01134 1.21392 0.94934 0.96561 0.92023 1.62244 1.18778 1.02369 1.42342 1.22189 0.95895 0.92347 0.96690 1.21930 0.97385 0.99217 0.96694 1.19002 0.93221 0.93119 0.94556 0.95774 1.22306 1.25366 1.08903 1.07142 0.97157 1.27241 0.94135 1.00150 1.00559 1.70993 1.50105 1.35192 1.01788 0.83597 0.77575 0.75064 0.73290 1.21748 1.19020 1.16419 1.21408 0.96617 0.97588 0.96039 1.21101 0.91668 0.91617 0.94040 1.21848 0.99791 0.95116 1.02217 1.22454 1.00383 1.02399 0.98365 0.87308 0.87773 0.87400 0.89495 0.93161 0.89893 0.94465 0.93033 0.94619 0.94213 0.94694 0.93450 0.91699 0.90816 0.92813 0.93183 0.90905 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 14.32 67.78 0.97 -2.32 16 2 C -0.17 -3.77 8.56 25.65 0.22 -3.55 16 3 C 0.08 1.85 4.68 85.56 0.40 2.25 16 4 N -0.53 -16.72 4.58 -851.35 -3.90 -20.63 16 5 C 0.06 1.91 4.70 86.32 0.41 2.32 16 6 C -0.11 -5.00 5.06 30.64 0.16 -4.84 16 7 C 0.02 0.95 1.44 -11.46 -0.02 0.93 16 8 H 0.02 1.13 5.20 -2.39 -0.01 1.12 16 9 C -0.60 -35.31 8.82 25.60 0.23 -35.08 16 10 H 0.01 0.66 7.99 -2.91 -0.02 0.64 16 11 C -0.02 -1.43 5.34 84.65 0.45 -0.98 16 12 N -0.94 -61.14 13.70 21.45 0.29 -60.85 16 13 Si 1.08 50.95 26.41 68.60 1.81 52.77 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.24 -9.93 5.57 99.48 0.55 -9.37 16 17 C -0.08 -3.26 4.12 30.65 0.13 -3.14 16 18 C 0.11 3.33 0.68 3.55 0.00 3.34 16 19 C -0.13 -3.39 8.06 71.98 0.58 -2.81 16 20 C -0.18 -5.08 7.48 71.98 0.54 -4.54 16 21 H 0.11 1.71 8.06 -2.91 -0.02 1.69 16 22 H 0.10 1.73 7.84 -2.91 -0.02 1.71 16 23 H 0.11 2.41 6.47 -2.91 -0.02 2.39 16 24 H 0.09 1.90 6.49 -2.38 -0.02 1.88 16 25 H 0.05 1.13 6.07 -2.39 -0.01 1.11 16 26 H 0.08 2.54 5.79 -2.38 -0.01 2.53 16 27 H 0.04 1.21 6.19 -2.39 -0.01 1.20 16 28 H 0.05 2.31 4.87 -2.38 -0.01 2.30 16 29 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 31 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.05 1.96 8.14 -2.38 -0.02 1.95 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.53 6.55 -2.38 -0.02 1.51 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.60 4.80 -2.39 -0.01 1.59 16 37 H 0.07 1.71 6.35 -2.39 -0.02 1.69 16 38 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -66.70 278.03 3.09 -63.60 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.83 Total: 13.51 kcal Atomic # 6 Polarization: -52.47 SS G_CDS: 4.06 Total: -48.41 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -3.61 Total: -81.47 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 1.81 Total: 52.77 kcal Total: -66.70 3.09 -63.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259176012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.453 kcal (2) G-P(sol) polarization free energy of solvation -66.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds