Wall clock time and date at job start Mon Mar 30 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.31001 * 119.99653 * 2 1 4 4 C 1.50704 * 119.99653 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46918 * 125.00105 * 4 3 2 6 6 C 1.46847 * 110.99897 * 189.99613 * 5 4 3 7 7 C 1.53034 * 109.51345 * 174.16738 * 6 5 4 8 8 C 1.53099 * 109.29509 * 59.18740 * 7 6 5 9 9 C 1.52993 * 109.52781 * 182.43453 * 8 7 6 10 10 C 1.50699 * 109.47187 * 294.67655 * 9 8 7 11 11 H 1.07994 * 120.00054 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99439 * 180.02562 * 10 9 8 13 13 N 1.31504 * 120.00836 * 0.02562 * 12 10 9 14 14 Si 1.86810 * 119.99406 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47146 * 90.00227 * 14 12 10 16 16 H 1.48500 * 109.46739 * 209.99951 * 14 12 10 17 17 H 1.48503 * 109.47013 * 329.99943 * 14 12 10 18 18 C 1.53126 * 109.15071 * 302.33888 * 8 7 6 19 19 C 1.46854 * 110.99958 * 65.78751 * 5 4 3 20 20 H 1.09001 * 109.46705 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46898 * 299.99669 * 1 2 3 22 22 H 1.08992 * 109.47097 * 60.00227 * 1 2 3 23 23 H 1.07996 * 120.00213 * 179.97438 * 2 1 3 24 24 H 1.07997 * 120.00459 * 0.02562 * 3 2 1 25 25 H 1.08994 * 109.47388 * 5.00022 * 4 3 2 26 26 H 1.09006 * 109.46859 * 245.00015 * 4 3 2 27 27 H 1.09002 * 109.46481 * 294.17890 * 6 5 4 28 28 H 1.08994 * 109.46283 * 54.15743 * 6 5 4 29 29 H 1.09007 * 109.50453 * 179.12106 * 7 6 5 30 30 H 1.09009 * 109.50412 * 299.23146 * 7 6 5 31 31 H 1.09002 * 109.57693 * 62.27167 * 8 7 6 32 32 H 1.09004 * 109.47084 * 54.67770 * 9 8 7 33 33 H 1.09001 * 109.46990 * 174.67248 * 9 8 7 34 34 H 0.97004 * 120.00513 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.50076 * 297.71308 * 18 8 7 36 36 H 1.08998 * 109.53581 * 177.61293 * 18 8 7 37 37 H 1.08993 * 109.46229 * 305.85774 * 19 5 4 38 38 H 1.09008 * 109.45803 * 65.83386 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 3.6690 1.1345 0.0006 5 7 4.1591 1.9287 -1.1339 6 6 5.6075 1.7602 -1.3076 7 6 6.0572 2.4823 -2.5797 8 6 5.7075 3.9686 -2.4682 9 6 6.0998 4.6848 -3.7620 10 6 7.5977 4.6464 -3.9231 11 1 8.2087 4.1603 -3.1770 12 6 8.1880 5.2329 -5.0224 13 7 7.4441 5.8262 -5.9301 14 14 10.0447 5.1847 -5.2224 15 1 10.4298 3.9649 -5.9768 16 1 10.4938 6.3891 -5.9661 17 1 10.6864 5.1619 -3.8834 18 6 4.2004 4.1143 -2.2394 19 6 3.8043 3.3451 -0.9771 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 2.0471 -0.9353 0.0004 24 1 1.6220 2.0698 0.0004 25 1 4.0324 0.1108 -0.0886 26 1 4.0320 1.5691 0.9321 27 1 6.1279 2.1816 -0.4475 28 1 5.8423 0.6991 -1.3900 29 1 7.1348 2.3703 -2.7002 30 1 5.5475 2.0521 -3.4419 31 1 6.2474 4.4090 -1.6300 32 1 5.6303 4.1862 -4.6100 33 1 5.7653 5.7213 -3.7193 34 1 7.8594 6.2385 -6.7038 35 1 3.6616 3.7098 -3.0961 36 1 3.9506 5.1682 -2.1168 37 1 2.7296 3.4349 -0.8192 38 1 4.3333 3.7591 -0.1186 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399448972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:28 Heat of formation + Delta-G solvation = -7.543565 kcal Electronic energy + Delta-G solvation = -15267.413280 eV Core-core repulsion = 12915.973012 eV Total energy + Delta-G solvation = -2351.440269 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.80715 -35.76523 -33.85656 -32.15085 -30.35944 -29.21681 -27.05338 -24.46226 -22.71898 -22.52376 -20.62609 -19.32078 -18.86574 -16.22126 -15.66066 -14.96409 -14.79450 -14.44939 -13.73128 -13.61243 -13.39656 -13.17457 -12.92141 -12.54709 -12.04746 -11.88753 -11.59213 -11.28532 -11.18722 -11.07396 -10.73588 -10.60505 -10.57912 -10.22318 -9.88838 -9.50372 -9.10214 -8.99653 -8.82277 -8.29701 -8.00324 -5.94387 -3.95779 2.16904 3.34429 3.40745 3.43701 4.26145 4.49914 4.76162 5.04918 5.25251 5.32064 5.40834 5.44364 5.47421 5.52548 5.57426 5.71868 5.74549 5.79495 5.86014 5.96635 6.01496 6.17575 6.29459 6.49441 6.61744 6.63710 6.69883 6.81368 7.03068 7.15125 7.24271 7.39324 7.44611 7.74292 7.91316 8.06727 8.49932 9.10882 9.67515 11.16978 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.061334 B = 0.004887 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.404985 B = 5727.679410 C = 5937.793429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.164 4.164 3 C -0.144 4.144 4 C 0.082 3.918 5 N -0.533 5.533 6 C 0.056 3.944 7 C -0.100 4.100 8 C -0.082 4.082 9 C 0.028 3.972 10 C -0.514 4.514 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.888 3.112 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.112 4.112 19 C 0.058 3.942 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.027 0.973 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.259 0.741 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 -9.235 11.739 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.183 4.183 3 C -0.163 4.163 4 C -0.046 4.046 5 N -0.258 5.258 6 C -0.072 4.072 7 C -0.137 4.137 8 C -0.100 4.100 9 C -0.009 4.009 10 C -0.552 4.552 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.716 3.284 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.150 4.150 19 C -0.070 4.070 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.124 0.876 24 H 0.125 0.875 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.979 -9.302 11.151 17.619 hybrid contribution 1.458 0.346 0.514 1.584 sum -8.521 -8.956 11.664 16.996 Atomic orbital electron populations 1.20819 0.93315 1.02022 1.01819 1.22761 0.95964 0.97872 1.01684 1.22734 0.95385 0.98127 1.00024 1.21150 0.92560 0.98518 0.92323 1.62007 1.14595 1.09051 1.40124 1.22212 0.86308 1.00030 0.98637 1.21544 1.01172 0.95480 0.95527 1.21233 0.92841 0.95215 1.00740 1.19119 0.95953 0.95006 0.90851 1.21262 0.92421 1.35154 1.06396 0.92721 1.25018 0.97828 0.95547 0.96105 1.69962 1.34987 1.37337 1.11313 0.86656 0.86164 0.77445 0.78099 1.20723 1.21325 1.19969 1.21694 0.98186 0.98475 0.96641 1.22147 0.99634 0.87371 0.97854 0.92315 0.92050 0.91703 0.87620 0.87482 0.90772 0.94533 0.95521 0.91673 0.90903 0.91845 0.93095 0.96505 0.96779 0.93113 0.91634 0.92212 0.91564 0.95529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.17 36.01 0.37 -0.68 16 2 C -0.16 -1.68 9.87 -36.02 -0.36 -2.03 16 3 C -0.14 -1.66 8.82 -36.02 -0.32 -1.98 16 4 C 0.08 1.03 5.41 -4.98 -0.03 1.00 16 5 N -0.53 -8.15 4.65 -236.11 -1.10 -9.24 16 6 C 0.06 0.89 5.46 -3.84 -0.02 0.87 16 7 C -0.10 -1.92 5.15 -26.66 -0.14 -2.05 16 8 C -0.08 -1.71 2.20 -90.51 -0.20 -1.91 16 9 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 10 C -0.51 -14.51 8.44 -34.44 -0.29 -14.80 16 11 H 0.05 1.50 7.08 -52.49 -0.37 1.13 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 14 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.11 -2.02 5.38 -26.65 -0.14 -2.16 16 19 C 0.06 0.88 5.31 -3.83 -0.02 0.86 16 20 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.11 1.01 7.84 -52.49 -0.41 0.60 16 24 H 0.11 1.22 6.82 -52.49 -0.36 0.86 16 25 H 0.07 0.87 7.64 -51.93 -0.40 0.47 16 26 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.94 8.02 -51.93 -0.42 0.52 16 29 H 0.07 1.48 7.05 -51.93 -0.37 1.11 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.91 6.42 -51.93 -0.33 0.58 16 38 H 0.03 0.41 8.14 -51.92 -0.42 -0.02 16 LS Contribution 301.76 15.07 4.55 4.55 Total: -1.00 -29.79 301.76 -9.06 -38.86 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.86 Total: -3.69 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.37 Total: -20.77 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.36 Total: -35.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.79 -9.06 -38.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399448972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.313 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds