Wall clock time and date at job start Mon Mar 30 2020 03:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 120.00173 * 2 1 4 4 C 1.52992 * 109.47528 * 125.00148 * 3 2 1 5 5 H 1.09002 * 110.62799 * 51.89288 * 4 3 2 6 6 C 1.55142 * 110.85577 * 288.68495 * 4 3 2 7 7 C 1.54903 * 101.65465 * 205.89049 * 6 4 3 8 8 N 1.47840 * 104.79635 * 37.07499 * 7 6 4 9 9 C 1.46902 * 110.99717 * 213.63731 * 8 7 6 10 10 C 1.53001 * 109.46901 * 290.83342 * 9 8 7 11 11 C 1.53000 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99751 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48500 * 109.47049 * 210.00797 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 C 1.47446 * 108.56505 * 335.89983 * 8 7 6 21 21 H 1.07996 * 119.99939 * 180.02562 * 1 2 3 22 22 H 1.07994 * 119.99773 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99705 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.46703 * 4.99722 * 3 2 1 25 25 H 1.08999 * 109.47107 * 245.00246 * 3 2 1 26 26 H 1.08996 * 110.99223 * 323.98750 * 6 4 3 27 27 H 1.09004 * 110.99283 * 87.79679 * 6 4 3 28 28 H 1.08997 * 110.37354 * 278.24035 * 7 6 4 29 29 H 1.09004 * 110.36852 * 155.90131 * 7 6 4 30 30 H 1.09001 * 109.46712 * 170.83744 * 9 8 7 31 31 H 1.09002 * 109.47411 * 50.83856 * 9 8 7 32 32 H 1.09001 * 109.46652 * 60.00371 * 10 9 8 33 33 H 1.08992 * 109.47514 * 300.00460 * 10 9 8 34 34 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 36 36 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.89164 * 120.39776 * 20 8 7 38 38 H 1.08999 * 109.89031 * 241.58788 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 1 3.6559 0.4371 1.1896 6 6 2.2696 1.4821 2.5227 7 6 3.3406 2.1483 3.4219 8 7 4.0608 3.0779 2.5260 9 6 5.4785 3.1756 2.8984 10 6 5.6045 3.9001 4.2401 11 6 7.0810 4.0024 4.6277 12 6 7.2051 4.7154 5.9495 13 1 6.3194 5.0606 6.4621 14 6 8.4494 4.9271 6.5045 15 7 8.5576 5.5489 7.6583 16 14 9.9813 4.3294 5.6183 17 1 10.4777 5.3969 4.7131 18 1 11.0314 3.9968 6.6143 19 1 9.6526 3.1192 4.8228 20 6 3.9106 2.6031 1.1381 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5399 0.9353 -0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6213 1.4026 -0.9314 26 1 1.4002 2.1291 2.4062 27 1 1.9795 0.5082 2.9170 28 1 4.0239 1.3972 3.8182 29 1 2.8653 2.6968 4.2352 30 1 6.0177 3.7330 2.1324 31 1 5.9014 2.1747 2.9847 32 1 5.0652 3.3426 5.0060 33 1 5.1816 4.9009 4.1538 34 1 7.5043 3.0017 4.7138 35 1 7.6199 4.5601 3.8617 36 1 9.4330 5.6981 8.0485 37 1 3.4232 3.3690 0.5349 38 1 4.8886 2.3652 0.7197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599526706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:41 Heat of formation + Delta-G solvation = 0.081684 kcal Electronic energy + Delta-G solvation = -14972.407412 eV Core-core repulsion = 12621.297799 eV Total energy + Delta-G solvation = -2351.109613 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.23733 -35.74354 -33.96420 -32.25453 -30.54550 -29.43749 -27.01167 -25.09480 -22.77716 -20.96562 -20.25951 -20.05742 -19.82503 -16.72649 -15.74122 -15.70167 -14.90443 -14.66463 -14.11095 -13.82682 -13.71452 -13.00537 -12.91169 -12.58763 -12.22869 -12.06754 -11.55562 -11.44634 -11.35649 -11.01514 -10.90744 -10.79005 -10.73640 -10.50934 -9.88369 -9.65450 -9.57743 -9.45756 -9.12682 -8.49946 -8.06501 -6.00339 -3.97728 2.05148 3.33047 3.39952 3.43934 4.20438 4.46293 4.48536 4.57048 4.71834 4.99382 5.06011 5.32925 5.33901 5.39056 5.39984 5.50817 5.64745 5.66766 5.70078 5.82042 5.84657 5.91086 6.02907 6.16201 6.23089 6.27310 6.39678 6.53839 6.59331 6.63952 6.96378 7.22830 7.33358 7.41721 7.52219 7.84828 8.59703 9.05625 9.62484 11.13362 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.068926 B = 0.004314 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.136921 B = 6488.256538 C = 6683.268302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.083 4.083 4 C -0.106 4.106 5 H 0.074 0.926 6 C -0.121 4.121 7 C 0.042 3.958 8 N -0.530 5.530 9 C 0.049 3.951 10 C -0.096 4.096 11 C -0.014 4.014 12 C -0.517 4.517 13 H 0.072 0.928 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.045 3.955 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.074 0.926 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.905 -10.737 -15.558 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.166 4.166 3 C -0.121 4.121 4 C -0.125 4.125 5 H 0.092 0.908 6 C -0.159 4.159 7 C -0.085 4.085 8 N -0.254 5.254 9 C -0.079 4.079 10 C -0.134 4.134 11 C -0.051 4.051 12 C -0.555 4.555 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.083 4.083 21 H 0.112 0.888 22 H 0.114 0.886 23 H 0.123 0.877 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.966 -10.164 -15.374 22.535 hybrid contribution 1.320 -1.109 -0.385 1.767 sum -11.646 -11.273 -15.759 22.607 Atomic orbital electron populations 1.23825 0.95963 1.01707 1.02040 1.22969 0.96034 0.98497 0.99121 1.20748 0.97858 0.95439 0.98035 1.22372 0.96621 0.98563 0.94973 0.90804 1.22765 0.98173 1.00487 0.94515 1.23054 0.95318 0.94012 0.96147 1.63615 1.12927 1.47452 1.01376 1.22527 0.86783 0.99039 0.99511 1.21429 0.99031 0.99753 0.93181 1.19559 0.92164 0.96476 0.96947 1.21162 0.94294 1.36416 1.03657 0.91025 1.25046 0.99058 0.94751 0.94774 1.69922 1.24099 1.42584 1.17874 0.86764 0.82979 0.79814 0.79626 1.20301 1.21446 1.19118 1.22896 0.98725 0.95186 0.91508 0.88754 0.88623 0.87651 0.91102 0.90935 0.90816 0.91246 0.93535 0.90137 0.91416 0.95347 0.92970 0.92052 0.96949 0.97122 0.92806 0.90723 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 14.32 29.01 0.42 -1.11 16 2 C -0.15 -1.21 9.22 -36.03 -0.33 -1.54 16 3 C -0.08 -0.72 5.02 -27.89 -0.14 -0.86 16 4 C -0.11 -1.09 2.90 -88.80 -0.26 -1.34 16 5 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.12 -1.33 6.23 -24.59 -0.15 -1.48 16 7 C 0.04 0.58 5.78 -2.30 -0.01 0.57 16 8 N -0.53 -8.02 5.16 -231.25 -1.19 -9.21 16 9 C 0.05 0.84 4.56 -3.82 -0.02 0.82 16 10 C -0.10 -1.99 5.20 -26.73 -0.14 -2.13 16 11 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 12 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 13 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 15 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 16 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 C 0.04 0.55 6.46 -2.83 -0.02 0.53 16 21 H 0.09 0.63 8.06 -52.49 -0.42 0.21 16 22 H 0.10 0.70 7.84 -52.49 -0.41 0.29 16 23 H 0.11 0.81 8.06 -52.48 -0.42 0.38 16 24 H 0.07 0.61 7.66 -51.93 -0.40 0.22 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.66 7.62 -51.93 -0.40 0.27 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.13 8.03 -51.93 -0.42 0.72 16 31 H 0.03 0.48 7.85 -51.93 -0.41 0.07 16 32 H 0.05 1.09 7.49 -51.93 -0.39 0.70 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.07 0.87 7.82 -51.93 -0.41 0.46 16 38 H 0.05 0.63 7.55 -51.93 -0.39 0.24 16 LS Contribution 303.93 15.07 4.58 4.58 Total: -1.00 -30.87 303.93 -8.65 -39.52 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.94 Total: -3.96 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.20 Total: -20.69 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.42 Total: -36.96 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.87 -8.65 -39.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.605 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds