Wall clock time and date at job start Mon Mar 30 2020 03:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 120.00173 * 2 1 4 4 C 1.52992 * 109.47528 * 125.00148 * 3 2 1 5 5 H 1.09002 * 110.62799 * 51.89288 * 4 3 2 6 6 C 1.55142 * 110.85577 * 288.68495 * 4 3 2 7 7 C 1.54903 * 101.65465 * 205.89049 * 6 4 3 8 8 N 1.47840 * 104.79635 * 37.07499 * 7 6 4 9 9 C 1.46902 * 110.99717 * 213.63731 * 8 7 6 10 10 C 1.53001 * 109.46901 * 290.83342 * 9 8 7 11 11 C 1.53000 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99751 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48500 * 109.47049 * 210.00797 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 C 1.47446 * 108.56505 * 335.89983 * 8 7 6 21 21 H 1.07996 * 119.99939 * 180.02562 * 1 2 3 22 22 H 1.07994 * 119.99773 * 0.02562 * 1 2 3 23 23 H 1.08004 * 119.99705 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.46703 * 4.99722 * 3 2 1 25 25 H 1.08999 * 109.47107 * 245.00246 * 3 2 1 26 26 H 1.08996 * 110.99223 * 323.98750 * 6 4 3 27 27 H 1.09004 * 110.99283 * 87.79679 * 6 4 3 28 28 H 1.08997 * 110.37354 * 278.24035 * 7 6 4 29 29 H 1.09004 * 110.36852 * 155.90131 * 7 6 4 30 30 H 1.09001 * 109.46712 * 170.83744 * 9 8 7 31 31 H 1.09002 * 109.47411 * 50.83856 * 9 8 7 32 32 H 1.09001 * 109.46652 * 60.00371 * 10 9 8 33 33 H 1.08992 * 109.47514 * 300.00460 * 10 9 8 34 34 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 36 36 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.89164 * 120.39776 * 20 8 7 38 38 H 1.08999 * 109.89031 * 241.58788 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1815 5 1 3.6559 0.4371 1.1896 6 6 2.2696 1.4821 2.5227 7 6 3.3406 2.1483 3.4219 8 7 4.0608 3.0779 2.5260 9 6 5.4785 3.1756 2.8984 10 6 5.6045 3.9001 4.2401 11 6 7.0810 4.0024 4.6277 12 6 7.2051 4.7154 5.9495 13 1 6.3194 5.0606 6.4621 14 6 8.4494 4.9271 6.5045 15 7 8.5576 5.5489 7.6583 16 14 9.9813 4.3294 5.6183 17 1 10.4777 5.3969 4.7131 18 1 11.0314 3.9968 6.6143 19 1 9.6526 3.1192 4.8228 20 6 3.9106 2.6031 1.1381 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5399 0.9353 -0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6213 1.4026 -0.9314 26 1 1.4002 2.1291 2.4062 27 1 1.9795 0.5082 2.9170 28 1 4.0239 1.3972 3.8182 29 1 2.8653 2.6968 4.2352 30 1 6.0177 3.7330 2.1324 31 1 5.9014 2.1747 2.9847 32 1 5.0652 3.3426 5.0060 33 1 5.1816 4.9009 4.1538 34 1 7.5043 3.0017 4.7138 35 1 7.6199 4.5601 3.8617 36 1 9.4330 5.6981 8.0485 37 1 3.4232 3.3690 0.5349 38 1 4.8886 2.3652 0.7197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599526706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:41 Heat of formation + Delta-G solvation = -18.703630 kcal Electronic energy + Delta-G solvation = -14973.222005 eV Core-core repulsion = 12621.297799 eV Total energy + Delta-G solvation = -2351.924205 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26094 -36.82139 -35.54213 -34.01072 -31.94264 -30.39610 -28.59845 -26.17078 -24.33382 -22.37442 -21.39252 -21.17266 -20.66754 -18.91447 -16.88817 -16.61110 -16.29281 -16.00485 -15.63919 -14.87021 -14.76955 -14.62913 -14.14450 -14.03961 -13.49780 -13.25972 -13.07071 -12.71899 -12.51076 -12.34434 -12.14907 -11.92156 -11.77456 -11.66331 -11.53861 -11.45421 -11.36286 -11.15161 -10.77002 -10.12777 -9.22295 -8.30047 -6.34633 1.35430 1.37675 1.46669 1.49910 2.36124 3.04975 3.06922 3.61900 3.78037 3.84271 4.17630 4.24236 4.37319 4.39306 4.41253 4.52349 4.63825 4.67307 4.72193 4.84007 4.88354 4.94913 4.98468 5.01518 5.05947 5.15486 5.15675 5.18531 5.44291 5.51094 5.59125 5.65503 5.81514 5.94960 6.10449 6.16776 6.30312 6.73556 7.29928 8.87192 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.068926 B = 0.004314 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.136921 B = 6488.256538 C = 6683.268302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.078 4.078 4 C -0.097 4.097 5 H 0.077 0.923 6 C -0.112 4.112 7 C 0.037 3.963 8 N -0.545 5.545 9 C 0.061 3.939 10 C -0.087 4.087 11 C -0.009 4.009 12 C -0.535 4.535 13 H 0.027 0.973 14 C 0.001 3.999 15 N -0.954 5.954 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.246 1.246 20 C 0.042 3.958 21 H 0.103 0.897 22 H 0.097 0.903 23 H 0.111 0.889 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.081 0.919 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.625 -12.291 -17.949 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.176 4.176 3 C -0.115 4.115 4 C -0.116 4.116 5 H 0.095 0.905 6 C -0.150 4.150 7 C -0.091 4.091 8 N -0.269 5.269 9 C -0.067 4.067 10 C -0.125 4.125 11 C -0.047 4.047 12 C -0.573 4.573 13 H 0.046 0.954 14 C -0.196 4.196 15 N -0.594 5.594 16 Si 0.779 3.221 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.169 1.169 20 C -0.085 4.085 21 H 0.122 0.878 22 H 0.115 0.885 23 H 0.129 0.871 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.714 -11.724 -17.782 24.805 hybrid contribution 1.126 -0.568 0.436 1.334 sum -11.588 -12.293 -17.347 24.214 Atomic orbital electron populations 1.23976 0.95985 1.02314 1.01213 1.23009 0.96236 0.98478 0.99850 1.20689 0.97521 0.95749 0.97561 1.22309 0.96531 0.97613 0.95196 0.90478 1.22715 0.97304 1.00755 0.94271 1.23082 0.95946 0.93690 0.96344 1.63532 1.11501 1.48704 1.03174 1.22276 0.88480 0.98711 0.97217 1.21248 0.96415 0.99436 0.95388 1.19492 0.94770 0.95955 0.94487 1.21513 0.93123 1.36959 1.05682 0.95417 1.26094 1.03127 0.94761 0.95578 1.70081 1.25360 1.44123 1.19868 0.85576 0.77804 0.80171 0.78586 1.18954 1.20846 1.16937 1.22975 0.99584 0.96327 0.89606 0.87830 0.88457 0.87096 0.91194 0.90074 0.90608 0.90049 0.94184 0.91453 0.90656 0.94834 0.93944 0.93541 0.96295 0.96145 0.92449 0.90059 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 14.32 67.78 0.97 -1.61 16 2 C -0.16 -2.18 9.22 25.64 0.24 -1.95 16 3 C -0.08 -1.13 5.02 29.84 0.15 -0.98 16 4 C -0.10 -1.76 2.90 -9.62 -0.03 -1.79 16 5 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 6 C -0.11 -2.25 6.23 31.98 0.20 -2.05 16 7 C 0.04 0.99 5.78 86.77 0.50 1.49 16 8 N -0.54 -15.81 5.16 -885.55 -4.57 -20.38 16 9 C 0.06 2.01 4.56 86.30 0.39 2.41 16 10 C -0.09 -3.62 5.20 30.59 0.16 -3.46 16 11 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 12 C -0.53 -32.18 9.66 25.60 0.25 -31.93 16 13 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 14 C 0.00 0.04 5.47 84.65 0.46 0.51 16 15 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 16 Si 0.96 45.12 27.47 68.60 1.88 47.01 16 17 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 20 C 0.04 0.94 6.46 86.65 0.56 1.50 16 21 H 0.10 1.14 8.06 -2.91 -0.02 1.12 16 22 H 0.10 1.22 7.84 -2.91 -0.02 1.20 16 23 H 0.11 1.41 8.06 -2.91 -0.02 1.38 16 24 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.49 7.95 -2.39 -0.02 1.48 16 27 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.04 1.11 7.62 -2.39 -0.02 1.10 16 29 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.07 2.36 8.03 -2.39 -0.02 2.34 16 31 H 0.03 1.07 7.85 -2.39 -0.02 1.05 16 32 H 0.04 1.81 7.49 -2.39 -0.02 1.79 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 35 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 36 H 0.27 15.93 8.31 -92.71 -0.77 15.15 16 37 H 0.08 1.71 7.82 -2.39 -0.02 1.69 16 38 H 0.06 1.22 7.55 -2.39 -0.02 1.20 16 Total: -1.00 -66.90 303.93 2.51 -64.39 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.92 Total: 8.31 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.97 Total: -38.18 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -4.27 Total: -81.53 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.01 kcal Total: -66.90 2.51 -64.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599526706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.689 kcal (2) G-P(sol) polarization free energy of solvation -66.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds