Wall clock time and date at job start Mon Mar 30 2020 02:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.56089 * 2 1 4 4 C 1.52997 * 117.49537 * 214.31748 * 2 1 3 5 5 C 1.53000 * 117.49776 * 145.69294 * 2 1 3 6 6 H 1.08990 * 117.49990 * 359.97438 * 5 2 1 7 7 C 1.52998 * 117.49463 * 214.97475 * 5 2 1 8 8 N 1.46901 * 109.46902 * 174.98877 * 7 5 2 9 9 C 1.47438 * 110.99999 * 69.87355 * 8 7 5 10 10 C 1.54328 * 107.23248 * 123.25709 * 9 8 7 11 11 C 1.55140 * 103.01719 * 22.28625 * 10 9 8 12 12 H 1.08998 * 110.99317 * 82.47343 * 11 10 9 13 13 C 1.50699 * 110.98843 * 206.25371 * 11 10 9 14 14 H 1.08004 * 119.99626 * 118.54572 * 13 11 10 15 15 C 1.37876 * 120.00220 * 298.54318 * 13 11 10 16 16 N 1.31511 * 119.99641 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00073 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47400 * 90.00228 * 17 15 13 19 19 H 1.48504 * 109.47029 * 210.00145 * 17 15 13 20 20 H 1.48501 * 109.47182 * 329.99949 * 17 15 13 21 21 C 1.47849 * 110.99879 * 190.71941 * 8 7 5 22 22 H 1.09000 * 109.46919 * 274.30794 * 1 2 3 23 23 H 1.09000 * 109.47139 * 34.30150 * 1 2 3 24 24 H 1.08994 * 109.47047 * 154.31069 * 1 2 3 25 25 H 1.08996 * 109.47111 * 205.68891 * 3 2 1 26 26 H 1.09000 * 109.47300 * 325.69419 * 3 2 1 27 27 H 1.09004 * 109.46610 * 85.68977 * 3 2 1 28 28 H 1.08999 * 117.49685 * 145.02116 * 4 2 1 29 29 H 1.08999 * 117.52022 * 359.97438 * 4 2 1 30 30 H 1.09004 * 109.47622 * 294.98781 * 7 5 2 31 31 H 1.09007 * 109.47001 * 54.99244 * 7 5 2 32 32 H 1.08998 * 109.88987 * 242.66060 * 9 8 7 33 33 H 1.09003 * 109.88861 * 3.85574 * 9 8 7 34 34 H 1.09000 * 110.70283 * 140.66686 * 10 9 8 35 35 H 1.08997 * 110.70455 * 263.72718 * 10 9 8 36 36 H 0.97002 * 120.00070 * 179.97438 * 16 15 13 37 37 H 1.08994 * 110.37210 * 332.46335 * 21 8 7 38 38 H 1.08997 * 110.37521 * 94.80869 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6113 -1.8583 1.2685 7 6 3.5491 -0.7760 1.4713 8 7 4.0097 -1.9377 2.2434 9 6 4.4599 -3.0209 1.3502 10 6 5.9186 -3.3509 1.7309 11 6 6.0253 -2.8314 3.1889 12 1 5.6313 -3.5633 3.8940 13 6 7.4477 -2.4687 3.5299 14 1 7.6960 -1.4528 3.7996 15 6 8.4319 -3.4337 3.4977 16 7 8.1295 -4.6706 3.1688 17 14 10.1948 -2.9842 3.9211 18 1 10.4147 -3.1624 5.3789 19 1 11.1245 -3.8648 3.1691 20 1 10.4470 -1.5681 3.5520 21 6 5.1279 -1.5698 3.1380 22 1 -0.3633 0.0772 1.0248 23 1 -0.3633 0.8489 -0.5791 24 1 -0.3633 -0.9260 -0.4455 25 1 3.1824 1.3085 -0.4455 26 1 1.5812 2.0743 -0.5792 27 1 2.2773 1.7413 1.0248 28 1 3.1715 -0.8750 -1.2684 29 1 1.6115 -1.8587 -1.2683 30 1 4.3023 -0.5110 0.7293 31 1 3.3891 0.0669 2.1437 32 1 3.8322 -3.9012 1.4892 33 1 4.4134 -2.6896 0.3128 34 1 6.0935 -4.4261 1.6911 35 1 6.6156 -2.8241 1.0792 36 1 8.8220 -5.3495 3.1458 37 1 5.6818 -0.7265 2.7258 38 1 4.7542 -1.3295 4.1333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722883394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:33 Heat of formation + Delta-G solvation = 10.219351 kcal Electronic energy + Delta-G solvation = -15556.475074 eV Core-core repulsion = 13205.805063 eV Total energy + Delta-G solvation = -2350.670011 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.01685 -37.30584 -33.08623 -30.79412 -28.90967 -28.15794 -27.62492 -25.55801 -23.81767 -21.02438 -19.78189 -19.61122 -18.33547 -16.41705 -15.37649 -14.78876 -14.53748 -14.52431 -13.96751 -13.55960 -12.95392 -12.54621 -12.47193 -12.39656 -12.05784 -11.96704 -11.82107 -11.26209 -11.05740 -10.94236 -10.82784 -10.70424 -10.50841 -10.19660 -9.65637 -9.55423 -9.40146 -9.14501 -8.81263 -8.37862 -7.54560 -6.00948 -4.04410 3.30648 3.37290 3.40260 3.79589 4.41703 4.55991 4.81256 4.89703 5.05330 5.19280 5.32894 5.56692 5.58908 5.67039 5.83316 5.85232 5.88600 5.90207 5.92582 6.00723 6.09153 6.11703 6.25832 6.31852 6.32963 6.51731 6.55376 6.61144 6.87806 7.18951 7.23692 7.67773 7.76859 7.82624 7.94001 8.04417 8.44429 8.97617 9.59797 11.08665 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057714 B = 0.005485 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.032217 B = 5103.375774 C = 5282.184142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.134 4.134 3 C -0.114 4.114 4 C -0.176 4.176 5 C -0.127 4.127 6 H 0.109 0.891 7 C 0.085 3.915 8 N -0.534 5.534 9 C 0.041 3.959 10 C -0.117 4.117 11 C 0.048 3.952 12 H 0.036 0.964 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.046 3.954 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.260 0.740 37 H 0.034 0.966 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.437 7.692 -6.585 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.134 4.134 3 C -0.171 4.171 4 C -0.213 4.213 5 C -0.145 4.145 6 H 0.127 0.873 7 C -0.044 4.044 8 N -0.258 5.258 9 C -0.087 4.087 10 C -0.156 4.156 11 C 0.029 3.971 12 H 0.054 0.946 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.081 4.081 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.778 7.348 -6.319 15.252 hybrid contribution 1.702 0.387 -0.380 1.786 sum -10.076 7.734 -6.699 14.360 Atomic orbital electron populations 1.21320 0.92348 1.01527 1.01686 1.21588 0.94474 0.91541 1.05840 1.21315 0.99888 0.94108 1.01775 1.23304 1.02071 1.00916 0.94985 1.22481 0.98806 1.00397 0.92845 0.87314 1.21719 0.93353 0.93727 0.95552 1.63546 1.35970 1.07370 1.18913 1.22882 0.97750 0.94163 0.93860 1.22679 0.91566 1.02023 0.99318 1.19724 0.93485 0.91061 0.92790 0.94578 1.21055 0.92387 0.95350 1.46579 0.92644 1.24962 0.98814 0.94976 0.95048 1.69968 1.33184 1.01351 1.48142 0.86619 0.84765 0.78308 0.78447 1.20633 1.21271 1.19982 1.23159 0.90176 0.99744 0.95001 0.92302 0.92510 0.92663 0.92520 0.92568 0.92198 0.89203 0.89236 0.95179 0.91353 0.92188 0.94467 0.90942 0.93584 0.93057 0.94750 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.85 37.16 0.37 -0.74 16 2 C -0.13 -1.57 2.70 -154.51 -0.42 -1.98 16 3 C -0.11 -1.23 8.86 37.16 0.33 -0.90 16 4 C -0.18 -2.20 9.43 -26.73 -0.25 -2.45 16 5 C -0.13 -1.78 5.02 -90.62 -0.45 -2.24 16 6 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 7 C 0.09 1.39 3.90 -3.82 -0.01 1.38 16 8 N -0.53 -10.47 5.16 -231.24 -1.19 -11.67 16 9 C 0.04 0.83 6.42 -2.83 -0.02 0.81 16 10 C -0.12 -2.81 5.64 -24.90 -0.14 -2.95 16 11 C 0.05 1.24 2.96 -89.63 -0.27 0.97 16 12 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 13 C -0.52 -14.30 8.55 -34.44 -0.29 -14.59 16 14 H 0.06 1.52 7.79 -52.48 -0.41 1.11 16 15 C 0.06 1.78 5.34 -17.82 -0.10 1.69 16 16 N -0.89 -25.67 12.12 55.43 0.67 -25.00 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.05 1.01 6.13 -2.29 -0.01 0.99 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 24 H 0.05 0.52 7.90 -51.93 -0.41 0.11 16 25 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 26 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 27 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 28 H 0.09 1.15 7.94 -51.93 -0.41 0.74 16 29 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 30 H 0.03 0.51 7.69 -51.93 -0.40 0.11 16 31 H 0.07 1.08 7.70 -51.93 -0.40 0.68 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.04 0.69 7.28 -51.93 -0.38 0.32 16 34 H 0.07 1.86 7.54 -51.93 -0.39 1.47 16 35 H 0.05 1.14 8.04 -51.93 -0.42 0.73 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.03 0.75 7.70 -51.93 -0.40 0.35 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 301.14 15.07 4.54 4.54 Total: -1.00 -28.14 301.14 -9.20 -37.34 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.92 Total: -1.55 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -1.27 Total: -20.01 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.52 Total: -36.66 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.14 -9.20 -37.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722883394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.560 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds