Wall clock time and date at job start Mon Mar 30 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.56089 * 2 1 4 4 C 1.52997 * 117.49537 * 214.31748 * 2 1 3 5 5 C 1.53000 * 117.49776 * 145.69294 * 2 1 3 6 6 H 1.08990 * 117.49990 * 359.97438 * 5 2 1 7 7 C 1.52998 * 117.49463 * 214.97475 * 5 2 1 8 8 N 1.46901 * 109.46902 * 174.98877 * 7 5 2 9 9 C 1.47438 * 110.99999 * 69.87355 * 8 7 5 10 10 C 1.54328 * 107.23248 * 123.25709 * 9 8 7 11 11 C 1.55140 * 103.01719 * 22.28625 * 10 9 8 12 12 H 1.08998 * 110.99317 * 82.47343 * 11 10 9 13 13 C 1.50699 * 110.98843 * 206.25371 * 11 10 9 14 14 H 1.08004 * 119.99626 * 118.54572 * 13 11 10 15 15 C 1.37876 * 120.00220 * 298.54318 * 13 11 10 16 16 N 1.31511 * 119.99641 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00073 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47400 * 90.00228 * 17 15 13 19 19 H 1.48504 * 109.47029 * 210.00145 * 17 15 13 20 20 H 1.48501 * 109.47182 * 329.99949 * 17 15 13 21 21 C 1.47849 * 110.99879 * 190.71941 * 8 7 5 22 22 H 1.09000 * 109.46919 * 274.30794 * 1 2 3 23 23 H 1.09000 * 109.47139 * 34.30150 * 1 2 3 24 24 H 1.08994 * 109.47047 * 154.31069 * 1 2 3 25 25 H 1.08996 * 109.47111 * 205.68891 * 3 2 1 26 26 H 1.09000 * 109.47300 * 325.69419 * 3 2 1 27 27 H 1.09004 * 109.46610 * 85.68977 * 3 2 1 28 28 H 1.08999 * 117.49685 * 145.02116 * 4 2 1 29 29 H 1.08999 * 117.52022 * 359.97438 * 4 2 1 30 30 H 1.09004 * 109.47622 * 294.98781 * 7 5 2 31 31 H 1.09007 * 109.47001 * 54.99244 * 7 5 2 32 32 H 1.08998 * 109.88987 * 242.66060 * 9 8 7 33 33 H 1.09003 * 109.88861 * 3.85574 * 9 8 7 34 34 H 1.09000 * 110.70283 * 140.66686 * 10 9 8 35 35 H 1.08997 * 110.70455 * 263.72718 * 10 9 8 36 36 H 0.97002 * 120.00070 * 179.97438 * 16 15 13 37 37 H 1.08994 * 110.37210 * 332.46335 * 21 8 7 38 38 H 1.08997 * 110.37521 * 94.80869 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6113 -1.8583 1.2685 7 6 3.5491 -0.7760 1.4713 8 7 4.0097 -1.9377 2.2434 9 6 4.4599 -3.0209 1.3502 10 6 5.9186 -3.3509 1.7309 11 6 6.0253 -2.8314 3.1889 12 1 5.6313 -3.5633 3.8940 13 6 7.4477 -2.4687 3.5299 14 1 7.6960 -1.4528 3.7996 15 6 8.4319 -3.4337 3.4977 16 7 8.1295 -4.6706 3.1688 17 14 10.1948 -2.9842 3.9211 18 1 10.4147 -3.1624 5.3789 19 1 11.1245 -3.8648 3.1691 20 1 10.4470 -1.5681 3.5520 21 6 5.1279 -1.5698 3.1380 22 1 -0.3633 0.0772 1.0248 23 1 -0.3633 0.8489 -0.5791 24 1 -0.3633 -0.9260 -0.4455 25 1 3.1824 1.3085 -0.4455 26 1 1.5812 2.0743 -0.5792 27 1 2.2773 1.7413 1.0248 28 1 3.1715 -0.8750 -1.2684 29 1 1.6115 -1.8587 -1.2683 30 1 4.3023 -0.5110 0.7293 31 1 3.3891 0.0669 2.1437 32 1 3.8322 -3.9012 1.4892 33 1 4.4134 -2.6896 0.3128 34 1 6.0935 -4.4261 1.6911 35 1 6.6156 -2.8241 1.0792 36 1 8.8220 -5.3495 3.1458 37 1 5.6818 -0.7265 2.7258 38 1 4.7542 -1.3295 4.1333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722883394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:32 Heat of formation + Delta-G solvation = -5.344084 kcal Electronic energy + Delta-G solvation = -15557.149955 eV Core-core repulsion = 13205.805063 eV Total energy + Delta-G solvation = -2351.344892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30575 -38.76603 -35.06673 -32.48019 -30.07092 -29.95580 -28.49479 -27.14934 -25.62285 -22.28828 -21.51343 -21.31503 -19.39691 -18.45858 -16.92732 -16.53847 -16.28061 -15.67131 -15.16911 -14.63012 -14.41392 -14.13316 -13.99599 -13.84321 -13.31455 -13.10359 -13.00752 -12.81240 -12.77345 -12.62177 -12.33707 -12.20095 -12.04045 -11.81318 -11.49395 -11.19177 -10.91411 -10.64524 -10.51269 -10.35185 -9.16273 -8.14904 -6.26137 1.40924 1.41090 1.51615 2.41282 2.78196 3.14759 3.19861 3.81415 3.87540 3.99359 4.11551 4.22678 4.34037 4.47003 4.51824 4.61105 4.70296 4.77518 4.82856 4.84240 4.89885 4.96188 5.03265 5.08518 5.09804 5.13434 5.24350 5.31243 5.32247 5.36872 5.52541 5.57991 5.79613 5.90229 6.06289 6.34991 6.35897 6.83028 7.41967 8.94285 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057714 B = 0.005485 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.032217 B = 5103.375774 C = 5282.184142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 C -0.116 4.116 4 C -0.175 4.175 5 C -0.144 4.144 6 H 0.101 0.899 7 C 0.089 3.911 8 N -0.535 5.535 9 C 0.055 3.945 10 C -0.109 4.109 11 C 0.038 3.962 12 H 0.004 0.996 13 C -0.536 4.536 14 H 0.055 0.945 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.058 3.942 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.033 0.967 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 9.098 -7.326 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.173 4.173 4 C -0.211 4.211 5 C -0.163 4.163 6 H 0.119 0.881 7 C -0.039 4.039 8 N -0.259 5.259 9 C -0.073 4.073 10 C -0.148 4.148 11 C 0.019 3.981 12 H 0.022 0.978 13 C -0.574 4.574 14 H 0.073 0.927 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.783 3.217 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.069 4.069 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.521 8.767 -7.062 16.837 hybrid contribution 1.899 -0.052 -0.144 1.906 sum -10.621 8.715 -7.207 15.514 Atomic orbital electron populations 1.21356 0.90791 1.02525 1.02200 1.21732 0.95577 0.91273 1.03277 1.21364 0.99903 0.93992 1.02075 1.23362 1.02362 1.01729 0.93694 1.22314 0.97993 1.02343 0.93639 0.88081 1.21748 0.94317 0.92546 0.95324 1.63557 1.34524 1.08582 1.19278 1.22732 0.94952 0.94771 0.94851 1.22476 0.93962 1.00069 0.98251 1.19686 0.93438 0.92166 0.92801 0.97824 1.21396 0.93720 0.95473 1.46832 0.92694 1.25772 1.03030 0.94842 0.94841 1.70096 1.34481 1.02259 1.48841 0.85568 0.79555 0.78271 0.78341 1.19959 1.20863 1.19205 1.22937 0.90196 0.97711 0.96040 0.92142 0.90880 0.92259 0.93147 0.90669 0.92250 0.89571 0.88144 0.95669 0.90742 0.91663 0.92664 0.93383 0.95052 0.92980 0.94846 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.85 71.98 0.71 -1.17 16 2 C -0.12 -2.46 2.70 -52.18 -0.14 -2.60 16 3 C -0.12 -2.22 8.86 71.98 0.64 -1.58 16 4 C -0.17 -3.99 9.43 30.60 0.29 -3.70 16 5 C -0.14 -3.80 5.02 -10.79 -0.05 -3.85 16 6 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 7 C 0.09 2.78 3.90 86.30 0.34 3.12 16 8 N -0.54 -20.64 5.16 -885.51 -4.57 -25.20 16 9 C 0.05 2.18 6.42 86.65 0.56 2.74 16 10 C -0.11 -5.33 5.64 31.78 0.18 -5.15 16 11 C 0.04 2.00 2.96 -10.15 -0.03 1.97 16 12 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 13 C -0.54 -30.20 8.55 25.60 0.22 -29.98 16 14 H 0.05 3.02 7.79 -2.91 -0.02 3.00 16 15 C 0.01 0.81 5.34 84.65 0.45 1.26 16 16 N -0.92 -54.11 12.12 21.45 0.26 -53.85 16 17 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 C 0.06 2.56 6.13 86.77 0.53 3.09 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.01 7.92 -2.39 -0.02 0.99 16 24 H 0.06 0.96 7.90 -2.39 -0.02 0.94 16 25 H 0.05 1.02 7.90 -2.39 -0.02 1.00 16 26 H 0.07 1.15 7.92 -2.39 -0.02 1.14 16 27 H 0.06 1.15 7.83 -2.38 -0.02 1.13 16 28 H 0.09 2.04 7.94 -2.39 -0.02 2.02 16 29 H 0.10 2.07 8.05 -2.39 -0.02 2.05 16 30 H 0.03 0.82 7.69 -2.39 -0.02 0.80 16 31 H 0.07 2.24 7.70 -2.38 -0.02 2.22 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.05 2.00 7.28 -2.39 -0.02 1.98 16 34 H 0.05 2.55 7.54 -2.39 -0.02 2.53 16 35 H 0.03 1.58 8.04 -2.39 -0.02 1.56 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.03 1.45 7.70 -2.39 -0.02 1.43 16 38 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -60.13 301.14 2.39 -57.74 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.99 Total: 11.16 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 3.68 Total: -35.86 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -4.31 Total: -79.05 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -60.13 2.39 -57.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722883394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.399 kcal (2) G-P(sol) polarization free energy of solvation -60.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds