Wall clock time and date at job start Mon Mar 30 2020 02:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47122 * 2 1 4 4 H 1.08996 * 109.45140 * 305.40216 * 3 2 1 5 5 C 1.53036 * 109.46296 * 65.37506 * 3 2 1 6 6 H 1.08999 * 109.50614 * 299.18005 * 5 3 2 7 7 C 1.50702 * 109.49970 * 59.25569 * 5 3 2 8 8 H 1.07992 * 120.00605 * 0.02562 * 7 5 3 9 9 C 1.37882 * 119.99769 * 179.72442 * 7 5 3 10 10 N 1.31521 * 119.99942 * 0.27601 * 9 7 5 11 11 Si 1.86795 * 120.00154 * 180.27678 * 9 7 5 12 12 H 1.48504 * 109.47070 * 89.99788 * 11 9 7 13 13 H 1.48495 * 109.47095 * 209.99690 * 11 9 7 14 14 H 1.48499 * 109.46899 * 329.99977 * 11 9 7 15 15 C 1.53121 * 109.27931 * 179.19457 * 5 3 2 16 16 C 1.53123 * 109.16093 * 302.34817 * 15 5 3 17 17 C 1.53034 * 109.27485 * 57.65363 * 16 15 5 18 18 N 1.46847 * 109.46237 * 185.43240 * 3 2 1 19 19 C 1.46897 * 111.00246 * 54.14507 * 18 3 2 20 20 C 1.52999 * 117.49636 * 246.27832 * 19 18 3 21 21 C 1.52997 * 60.00010 * 252.50765 * 20 19 18 22 22 H 1.09003 * 109.46568 * 182.65148 * 1 2 3 23 23 H 1.08998 * 109.47073 * 302.64773 * 1 2 3 24 24 H 1.09003 * 109.47166 * 62.65286 * 1 2 3 25 25 H 1.09002 * 109.47361 * 240.00069 * 2 1 3 26 26 H 1.09006 * 109.47453 * 119.99771 * 2 1 3 27 27 H 0.96997 * 119.99899 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.51991 * 62.25265 * 15 5 3 29 29 H 1.08993 * 109.52425 * 182.44267 * 15 5 3 30 30 H 1.08992 * 109.50387 * 297.71132 * 16 15 5 31 31 H 1.08998 * 109.52942 * 177.61163 * 16 15 5 32 32 H 1.09007 * 109.46103 * 180.80033 * 17 16 15 33 33 H 1.09000 * 109.46919 * 60.83634 * 17 16 15 34 34 H 1.08991 * 115.55292 * 31.98223 * 19 18 3 35 35 H 1.09006 * 117.49982 * 359.97438 * 20 19 18 36 36 H 1.09003 * 117.50121 * 145.02087 * 20 19 18 37 37 H 1.09000 * 117.49890 * 252.50952 * 21 20 19 38 38 H 1.09009 * 117.49745 * 107.48778 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9832 -0.8377 5 6 1.6431 2.1237 1.3117 6 1 0.5569 2.1354 1.4016 7 6 2.2358 1.3657 2.4715 8 1 2.8360 0.4861 2.2917 9 6 2.0168 1.7987 3.7621 10 7 1.2862 2.8702 3.9812 11 14 2.7578 0.8637 5.1995 12 1 4.1024 1.4137 5.5074 13 1 1.8800 1.0072 6.3886 14 1 2.8801 -0.5732 4.8449 15 6 2.1728 3.5603 1.3157 16 6 3.6924 3.5363 1.1293 17 6 4.0298 2.8142 -0.1771 18 7 3.5026 1.4444 -0.1311 19 6 3.9265 0.6772 -1.3099 20 6 4.7158 -0.6110 -1.0681 21 6 5.4240 0.6279 -1.6197 22 1 -0.3632 -1.0266 0.0475 23 1 -0.3633 0.5544 0.8653 24 1 -0.3634 0.4721 -0.9128 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.1325 3.1750 4.8891 28 1 1.7146 4.1198 0.5001 29 1 1.9299 4.0355 2.2661 30 1 4.1533 3.0103 1.9653 31 1 4.0708 4.5577 1.0888 32 1 5.1118 2.7828 -0.3058 33 1 3.5801 3.3484 -1.0140 34 1 3.2382 0.6949 -2.1548 35 1 4.9208 -0.8890 -0.0342 36 1 4.5466 -1.4412 -1.7539 37 1 5.7208 0.6129 -2.6684 38 1 6.0947 1.1648 -0.9487 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107234092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:08 Heat of formation + Delta-G solvation = 18.062932 kcal Electronic energy + Delta-G solvation = -16646.153333 eV Core-core repulsion = 14295.823445 eV Total energy + Delta-G solvation = -2350.329888 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.93227 -35.94521 -33.07619 -32.56457 -30.19685 -28.36146 -24.89233 -23.44416 -22.95468 -21.74050 -20.14863 -19.63894 -18.58154 -16.17845 -15.38643 -14.89002 -14.24862 -14.00885 -13.71245 -13.17348 -12.81829 -12.60676 -12.33696 -11.83375 -11.64152 -11.38301 -11.15160 -10.92383 -10.78702 -10.54297 -10.42126 -10.21099 -10.04902 -9.96043 -9.67265 -9.52105 -9.19317 -8.83221 -8.51854 -8.13833 -7.37154 -5.82589 -3.82393 3.39709 3.46519 3.50410 4.19383 4.46699 4.58056 5.29993 5.35487 5.48264 5.56001 5.71205 5.84527 5.90283 5.98137 6.02786 6.12328 6.24787 6.27136 6.29535 6.40992 6.47768 6.52467 6.57703 6.65812 6.77632 6.87664 6.92200 7.17547 7.26257 7.44399 7.53395 7.72279 7.98165 8.04334 8.12499 8.28834 8.67582 9.20192 9.78327 11.24136 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.010837 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.685065 B = 2583.128505 C = 2668.013947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C 0.102 3.898 4 H 0.009 0.991 5 C 0.053 3.947 6 H 0.032 0.968 7 C -0.470 4.470 8 H 0.063 0.937 9 C 0.053 3.947 10 N -0.900 5.900 11 Si 0.884 3.116 12 H -0.285 1.285 13 H -0.292 1.292 14 H -0.276 1.276 15 C -0.115 4.115 16 C -0.102 4.102 17 C 0.069 3.931 18 N -0.487 5.487 19 C 0.016 3.984 20 C -0.166 4.166 21 C -0.186 4.186 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.255 0.745 28 H 0.008 0.992 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.014 0.986 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -2.786 -8.971 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.005 4.005 4 H 0.027 0.973 5 C 0.035 3.965 6 H 0.050 0.950 7 C -0.509 4.509 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.713 3.287 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.201 1.201 15 C -0.153 4.153 16 C -0.140 4.140 17 C -0.059 4.059 18 N -0.211 5.211 19 C -0.093 4.093 20 C -0.204 4.204 21 C -0.223 4.223 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.821 -2.899 -8.398 9.672 hybrid contribution 0.127 -0.009 0.078 0.149 sum 3.948 -2.908 -8.320 9.658 Atomic orbital electron populations 1.21748 0.96701 1.00441 1.01531 1.21486 0.94724 0.96744 1.01463 1.21761 0.84650 0.95711 0.98406 0.97314 1.18824 0.96068 0.91348 0.90306 0.94968 1.21085 1.29655 1.10550 0.89568 0.91893 1.24940 0.95757 0.95251 0.98629 1.69869 1.40102 1.23964 1.20139 0.86714 0.78915 0.80461 0.82581 1.21107 1.21775 1.20132 1.21628 0.93053 0.99645 1.00976 1.21448 0.98923 0.96764 0.96855 1.21990 0.98097 0.88349 0.97445 1.61684 1.12105 1.12867 1.34460 1.22361 0.92817 0.99950 0.94211 1.23011 1.04039 0.91114 1.02193 1.23027 0.95391 1.03124 1.00795 0.93920 0.91273 0.94420 0.94182 0.90142 0.93475 0.97278 0.88764 0.90487 0.94542 0.92432 0.96829 0.90485 0.88213 0.89700 0.89632 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.73 37.16 0.36 -2.24 16 2 C -0.11 -2.05 5.14 -26.73 -0.14 -2.18 16 3 C 0.10 2.13 1.52 -67.72 -0.10 2.03 16 4 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 5 C 0.05 1.28 1.89 -91.69 -0.17 1.11 16 6 H 0.03 0.85 6.56 -51.93 -0.34 0.51 16 7 C -0.47 -12.34 6.28 -34.44 -0.22 -12.56 16 8 H 0.06 1.70 6.63 -52.49 -0.35 1.35 16 9 C 0.05 1.44 5.30 -17.82 -0.09 1.35 16 10 N -0.90 -25.44 11.31 55.43 0.63 -24.81 16 11 Si 0.88 21.53 29.54 -169.99 -5.02 16.51 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C -0.12 -2.72 5.32 -26.61 -0.14 -2.86 16 16 C -0.10 -2.18 5.84 -26.65 -0.16 -2.33 16 17 C 0.07 1.31 5.32 -3.84 -0.02 1.29 16 18 N -0.49 -9.57 4.21 -218.77 -0.92 -10.49 16 19 C 0.02 0.26 3.73 -67.72 -0.25 0.01 16 20 C -0.17 -2.45 10.40 -26.73 -0.28 -2.73 16 21 C -0.19 -2.62 9.69 -26.73 -0.26 -2.88 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.38 6.47 -51.93 -0.34 1.04 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.70 6.67 -51.93 -0.35 0.35 16 26 H 0.08 1.72 6.41 -51.93 -0.33 1.39 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 2.50 6.02 -51.93 -0.31 2.19 16 30 H 0.08 1.83 7.35 -51.93 -0.38 1.45 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.00 6.55 -51.92 -0.34 0.66 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 1.25 7.88 -51.93 -0.41 0.84 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.39 7.08 -51.92 -0.37 1.03 16 LS Contribution 285.75 15.07 4.31 4.31 Total: -1.00 -27.11 285.75 -8.93 -36.05 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.46 Total: 0.45 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.47 Total: -22.00 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.29 Total: -35.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.11 -8.93 -36.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107234092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.108 kcal (2) G-P(sol) polarization free energy of solvation -27.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds