Wall clock time and date at job start Mon Mar 30 2020 02:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47122 * 2 1 4 4 H 1.08996 * 109.45140 * 305.40216 * 3 2 1 5 5 C 1.53036 * 109.46296 * 65.37506 * 3 2 1 6 6 H 1.08999 * 109.50614 * 299.18005 * 5 3 2 7 7 C 1.50702 * 109.49970 * 59.25569 * 5 3 2 8 8 H 1.07992 * 120.00605 * 0.02562 * 7 5 3 9 9 C 1.37882 * 119.99769 * 179.72442 * 7 5 3 10 10 N 1.31521 * 119.99942 * 0.27601 * 9 7 5 11 11 Si 1.86795 * 120.00154 * 180.27678 * 9 7 5 12 12 H 1.48504 * 109.47070 * 89.99788 * 11 9 7 13 13 H 1.48495 * 109.47095 * 209.99690 * 11 9 7 14 14 H 1.48499 * 109.46899 * 329.99977 * 11 9 7 15 15 C 1.53121 * 109.27931 * 179.19457 * 5 3 2 16 16 C 1.53123 * 109.16093 * 302.34817 * 15 5 3 17 17 C 1.53034 * 109.27485 * 57.65363 * 16 15 5 18 18 N 1.46847 * 109.46237 * 185.43240 * 3 2 1 19 19 C 1.46897 * 111.00246 * 54.14507 * 18 3 2 20 20 C 1.52999 * 117.49636 * 246.27832 * 19 18 3 21 21 C 1.52997 * 60.00010 * 252.50765 * 20 19 18 22 22 H 1.09003 * 109.46568 * 182.65148 * 1 2 3 23 23 H 1.08998 * 109.47073 * 302.64773 * 1 2 3 24 24 H 1.09003 * 109.47166 * 62.65286 * 1 2 3 25 25 H 1.09002 * 109.47361 * 240.00069 * 2 1 3 26 26 H 1.09006 * 109.47453 * 119.99771 * 2 1 3 27 27 H 0.96997 * 119.99899 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.51991 * 62.25265 * 15 5 3 29 29 H 1.08993 * 109.52425 * 182.44267 * 15 5 3 30 30 H 1.08992 * 109.50387 * 297.71132 * 16 15 5 31 31 H 1.08998 * 109.52942 * 177.61163 * 16 15 5 32 32 H 1.09007 * 109.46103 * 180.80033 * 17 16 15 33 33 H 1.09000 * 109.46919 * 60.83634 * 17 16 15 34 34 H 1.08991 * 115.55292 * 31.98223 * 19 18 3 35 35 H 1.09006 * 117.49982 * 359.97438 * 20 19 18 36 36 H 1.09003 * 117.50121 * 145.02087 * 20 19 18 37 37 H 1.09000 * 117.49890 * 252.50952 * 21 20 19 38 38 H 1.09009 * 117.49745 * 107.48778 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9832 -0.8377 5 6 1.6431 2.1237 1.3117 6 1 0.5569 2.1354 1.4016 7 6 2.2358 1.3657 2.4715 8 1 2.8360 0.4861 2.2917 9 6 2.0168 1.7987 3.7621 10 7 1.2862 2.8702 3.9812 11 14 2.7578 0.8637 5.1995 12 1 4.1024 1.4137 5.5074 13 1 1.8800 1.0072 6.3886 14 1 2.8801 -0.5732 4.8449 15 6 2.1728 3.5603 1.3157 16 6 3.6924 3.5363 1.1293 17 6 4.0298 2.8142 -0.1771 18 7 3.5026 1.4444 -0.1311 19 6 3.9265 0.6772 -1.3099 20 6 4.7158 -0.6110 -1.0681 21 6 5.4240 0.6279 -1.6197 22 1 -0.3632 -1.0266 0.0475 23 1 -0.3633 0.5544 0.8653 24 1 -0.3634 0.4721 -0.9128 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.1325 3.1750 4.8891 28 1 1.7146 4.1198 0.5001 29 1 1.9299 4.0355 2.2661 30 1 4.1533 3.0103 1.9653 31 1 4.0708 4.5577 1.0888 32 1 5.1118 2.7828 -0.3058 33 1 3.5801 3.3484 -1.0140 34 1 3.2382 0.6949 -2.1548 35 1 4.9208 -0.8890 -0.0342 36 1 4.5466 -1.4412 -1.7539 37 1 5.7208 0.6129 -2.6684 38 1 6.0947 1.1648 -0.9487 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107234092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:08 Heat of formation + Delta-G solvation = 3.461656 kcal Electronic energy + Delta-G solvation = -16646.786491 eV Core-core repulsion = 14295.823445 eV Total energy + Delta-G solvation = -2350.963046 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48166 -37.37681 -34.67790 -34.45959 -31.91963 -30.05264 -26.87608 -25.02040 -24.55747 -22.93467 -21.65214 -21.17502 -20.38707 -17.82660 -17.12576 -16.68452 -15.78981 -15.66854 -15.22909 -14.81111 -14.39088 -14.33873 -13.90512 -13.49201 -13.38904 -12.99282 -12.78702 -12.43054 -12.41586 -12.29422 -12.14664 -11.77721 -11.67109 -11.43790 -11.34635 -11.13669 -10.90546 -10.59862 -10.38710 -10.18390 -8.85946 -7.92679 -5.96931 1.42979 1.45331 1.53661 2.53152 2.99079 3.08997 3.37272 4.11481 4.15151 4.18035 4.28328 4.31800 4.44354 4.52465 4.67254 4.69114 4.76433 4.81351 4.87291 4.92166 4.97926 5.05170 5.09640 5.17507 5.22709 5.26067 5.43264 5.53998 5.60846 5.66635 5.69549 5.78562 5.97913 6.21752 6.47028 6.56745 6.70999 7.10192 7.65681 9.12715 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.010837 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.685065 B = 2583.128505 C = 2668.013947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C 0.109 3.891 4 H 0.010 0.990 5 C 0.051 3.949 6 H 0.002 0.998 7 C -0.462 4.462 8 H 0.054 0.946 9 C 0.006 3.994 10 N -0.927 5.927 11 Si 0.937 3.063 12 H -0.284 1.284 13 H -0.292 1.292 14 H -0.272 1.272 15 C -0.113 4.113 16 C -0.096 4.096 17 C 0.073 3.927 18 N -0.505 5.505 19 C -0.006 4.006 20 C -0.162 4.162 21 C -0.165 4.165 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.252 0.748 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.022 0.978 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -3.806 -10.846 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C 0.002 3.998 4 H 0.028 0.972 5 C 0.032 3.968 6 H 0.020 0.980 7 C -0.501 4.501 8 H 0.072 0.928 9 C -0.190 4.190 10 N -0.569 5.569 11 Si 0.765 3.235 12 H -0.210 1.210 13 H -0.218 1.218 14 H -0.196 1.196 15 C -0.152 4.152 16 C -0.134 4.134 17 C -0.054 4.054 18 N -0.230 5.230 19 C -0.114 4.114 20 C -0.200 4.200 21 C -0.203 4.203 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.088 -3.932 -10.281 12.126 hybrid contribution -0.267 0.311 0.635 0.756 sum 4.821 -3.621 -9.646 11.375 Atomic orbital electron populations 1.21693 0.95815 1.01486 1.00970 1.21397 0.95472 0.95584 1.01226 1.21541 0.85974 0.96216 0.96118 0.97235 1.18749 0.94116 0.92010 0.91898 0.98032 1.21199 1.28625 1.09952 0.90311 0.92783 1.25560 0.96486 0.96083 1.00869 1.70008 1.41465 1.25227 1.20191 0.85872 0.78057 0.79538 0.80023 1.21008 1.21848 1.19646 1.21520 0.95091 0.99080 0.99479 1.21345 0.96707 0.98020 0.97354 1.21938 0.99392 0.88138 0.95940 1.61585 1.10990 1.13400 1.36977 1.22427 0.94645 1.00936 0.93420 1.23039 1.03464 0.91677 1.01833 1.23102 0.93220 1.01658 1.02280 0.91814 0.94322 0.92712 0.91794 0.92752 0.93838 0.96412 0.92099 0.93414 0.92606 0.90331 0.95972 0.89575 0.90198 0.87254 0.86768 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.73 71.98 0.70 -4.21 16 2 C -0.10 -3.70 5.14 30.59 0.16 -3.54 16 3 C 0.11 4.49 1.52 44.94 0.07 4.55 16 4 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 5 C 0.05 2.51 1.89 -11.49 -0.02 2.49 16 6 H 0.00 0.09 6.56 -2.39 -0.02 0.08 16 7 C -0.46 -24.79 6.28 25.60 0.16 -24.63 16 8 H 0.05 2.96 6.63 -2.91 -0.02 2.94 16 9 C 0.01 0.33 5.30 84.65 0.45 0.78 16 10 N -0.93 -54.08 11.31 21.45 0.24 -53.83 16 11 Si 0.94 44.93 29.54 68.60 2.03 46.96 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 14 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 15 C -0.11 -5.47 5.32 30.68 0.16 -5.31 16 16 C -0.10 -4.08 5.84 30.65 0.18 -3.90 16 17 C 0.07 2.66 5.32 86.32 0.46 3.11 16 18 N -0.51 -19.07 4.21 -846.05 -3.56 -22.63 16 19 C -0.01 -0.17 3.73 44.91 0.17 0.00 16 20 C -0.16 -4.30 10.40 30.59 0.32 -3.98 16 21 C -0.17 -4.02 9.69 30.59 0.30 -3.72 16 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.04 1.56 6.47 -2.39 -0.02 1.54 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 2.07 6.67 -2.39 -0.02 2.06 16 26 H 0.05 2.31 6.41 -2.38 -0.02 2.29 16 27 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 3.34 6.02 -2.39 -0.01 3.33 16 30 H 0.05 2.28 7.35 -2.39 -0.02 2.26 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.51 6.55 -2.38 -0.02 2.50 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 2.46 7.88 -2.39 -0.02 2.44 16 35 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 2.31 7.08 -2.38 -0.02 2.30 16 Total: -1.00 -59.02 285.75 2.81 -56.20 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.01 Total: 11.66 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 3.10 Total: -38.36 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -3.32 Total: -76.47 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -59.02 2.81 -56.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107234092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.664 kcal (2) G-P(sol) polarization free energy of solvation -59.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds